BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41860.1
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483269 jgi|Araly1|483269|fgenesh2_kg.4__2329__AT2G41860.2 2551 0.0
Ahg938735 jgi|Araly1|938735|scaffold_502926.1 1256 0.0
Ahg485540 jgi|Araly1|485540|fgenesh2_kg.5__1532__AT3G51850.1 457 2e-127
> Ahg483269 jgi|Araly1|483269|fgenesh2_kg.4__2329__AT2G41860.2
Length=1596
Score = 2551 bits (1381), Expect = 0.0
Identities = 1525/1596 (96%), Gaps = 3/1596 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAATTGTTGTGGAACGGCTGGATCGTTGATTC--AA-GATAAGCAGAAGAAAGGT 57
||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1 ATGGGGAATTGTTGTGGAACGGCTGGATCGTTGATTCAAAACGATAAACAGAAGAAAGGT 60
Query 58 TTTAAATTGCCAAATCCTTTCTCAAACGAGTACGGCAACCACCACGATGGCCTTAAGCTT 117
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 61 TTTAAATTGCCAAATCCTTTTTCAAACGATTACGGTAACCACCACGATGGCCTGAAGCTT 120
Query 118 ATCGTGTTGAAGGAACCAACGGGTCATGAGATCAAGCAGAAATATAAATTAGGTCGTGAG 177
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 121 ATCGTGTTGAAGGAACCAACGGGTCACGAGATCAAGCAGAAATACAAATTAGGTCGTGAG 180
Query 178 TTAGGTCGAGGAGAGTTCGGTGTGACGTATCTGTGCACCGAGATCGAGACCGGAGAGATT 237
|||||||||||||||| || || |||||||| ||||||||||| |||||||||||||||
Sbjct 181 CTAGGTCGAGGAGAGTTTGGGGTCACGTATCTATGCACCGAGATTGAGACCGGAGAGATT 240
Query 238 TTCGCATGCAAATCAATCTTAAAGAAGAAGCTGAAAACGTCGATTGATATAGAGGACGTT 297
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TTCGCATGCAAATCGATTTTAAAGAAGAAGCTGAAAACGTCGATTGATATTGAGGACGTT 300
Query 298 AAGAGAGAAGTTGAGATCATGAGGCAAATGCCTGAACATCCTAATATTGTTACTTTGAAA 357
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AAGAGAGAAGTTGAGATCATGAGGCAAATGCCTGAGCATCCTAATATTGTTACTTTGAAA 360
Query 358 GAGACTTATGAGGATGATAAAGCTGTGCATTTGGTTATGGAGCTTTGTGAAGGCGGTGAG 417
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GAGACTTATGAGGATGATAAAGCTGTTCATTTGGTTATGGAGCTTTGTGAAGGCGGTGAG 420
Query 418 CTTTTCGATAGGATTGTTGCTAGAGGGCATTATACGGAGAGAGCTGCTGCTTCGGTTATT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTTTCGATAGGATTGTTGCTAGAGGGCATTATACGGAGAGAGCTGCTGCTTCGGTTATT 480
Query 478 AAAACGATCATCGAGGTTGTTCAGATGTGTCATAAGCATGGAGTAATGCACAGAGATTTA 537
|| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 481 AAGACGATCATCGAGGTTGTTCAGATGTGCCATAAGCATGGAGTCATGCACAGAGACTTA 540
Query 538 AAACCTGAGAACTTCTTGTTTGCAAACAAGAAGGAAACTGCATCTTTGAAGGCTATTGAT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAACCTGAGAACTTCTTGTTTGCAAACAAGAAGGAAACTGCATCTTTGAAGGCTATTGAT 600
Query 598 TTTGGTCTCTCTGTTTTCTTTAAACCAGGCGAGAGATTTAACGAAATTGTTGGGAGTCCT 657
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 TTTGGTCTCTCTATTTTCTTTAAACCAGGCGAGAGATTTAACGAAATCGTTGGGAGTCCT 660
Query 658 TACTACATGGCTCCTGAGGTATTAAGGAGGAGTTATGGACAAGAAATTGACATTTGGAGC 717
|| ||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 661 TATTACATGGCTCCCGAGGTATTAAGGCGGAGTTATGGACAAGAAATCGACATTTGGAGC 720
Query 718 GCAGGAGTGATTCTTTACATATTGCTCTGTGGTGTTCCACCTTTTTGGGCAGAAACCGAA 777
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCAGGAGTGATTCTTTACATTTTGCTCTGTGGTGTTCCACCTTTTTGGGCAGAAACCGAA 780
Query 778 CATGGAGTCGCAAAAGCAATTCTTAAATCTGTAATTGACTTTAAAAGAGACCCCTGGCCT 837
||||||||||| |||||||||||| |||||| || ||||| | |||||||||||||||
Sbjct 781 CATGGAGTCGCGAAAGCAATTCTTCGATCTGTGATCGACTTCAGAAGAGACCCCTGGCCG 840
Query 838 AAAGTTTCTGATAATGCAAAAGATCTGATCAAAAAGATGCTTCATCCTGATCCAAGGCGT 897
|||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 841 AAAGTTTCTGGTAATGCAAAAGATCTGATAAAAAAGATGCTTCATCCAGATCCAAGGCGT 900
Query 898 CGTCTAACTGCTCAACAAGTGCTTGATCATCCGTGGATACAGAATGGTAAGAATGCTTCC 957
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CGTCTAACAGCTCAACAAGTGCTTGATCATCCGTGGATACAGAATGGTAAGAATGCTTCC 960
Query 958 AATGTATCATTGGGTGAAACCGTAAGAGCAAGGCTTAAGCAATTCTCTGTTATGAACAAG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AATGTATCATTGGGTGAAACCGTAAGAGCAAGGCTTAAGCAATTCTCTGTTATGAACAAG 1020
Query 1018 CTCAAGAAAAGGGCACTCAGGGTTATCGCTGAGCATCTATCGGTTGAAGAAACATCTTGC 1077
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 CTCAAGAAAAGGGCACTCAGGGTTATTGCTGAGCATCTATCGGTTGAAGAAACATCTTGC 1080
Query 1078 ATAAAAGAAAGATTCCAAGTAATGGATACAAGCAATAGAGGAAAGATTACTATCACCGAG 1137
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||| ||||
Sbjct 1081 ATAAAAGAAAGATTCCAAGTAATGGACACAAGCAATAGAGGGAAGATTACCATCAACGAG 1140
Query 1138 CTAGGAATCGGATTGCAGAAACTCGGGATTGTTGTTCCTCAAGATGACATTCAAATATTG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTAGGAATCGGATTGCAGAAACTCGGGATTGTTGTTCCTCAAGATGACATTCAAATATTG 1200
Query 1198 ATGGACGCGGGAGATGTTGATAAAGATGGATATTTAGACGTCAATGAATTTGTAGCCATA 1257
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 ATGGACGCGGGAGATGTTGATAAAGATGGATACTTAGACGTCAATGAATTTGTAGCCATA 1260
Query 1258 TCGGTACACATCAGGAAGTTAGGCAACGACGAGCACTTAAAGAAAGCTTTTACGTTCTTT 1317
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1261 TCGGTACACATCAGGAAGTTAGGCAACGACGAGCACTTAAAGGAAGCCTTTACGTTCTTC 1320
Query 1318 GACAAAAACAAGAGTGGTTATATCGAAATAGAGGAGTTAAGAGATGCTTTGGCAGATGAT 1377
||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||
Sbjct 1321 GACAAAAACAAGAGTGGTTATATAGAAATACAAGAATTAAGAGATGCTTTGGCAGATGAT 1380
Query 1378 GTTGACACTACTAGTGAAGAAGTTGTTGAAGCCATTATTCTTGATGTCGATACCAATAAG 1437
||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 1381 ATTGACACTACTAGTGAAGAAGTTGTCGAAGCCATTATCCTTGATGTCGACACCAATAAG 1440
Query 1438 GATGGGAAAATAAGTTACGACGAATTTGCAACGATGATGAAAACGGGAACGGATTGGAGA 1497
||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||||
Sbjct 1441 GATGGGAAAATAAGTTATGAAGAGTTTACAACGATGATGAAAACGGGAACGGATTGGAGA 1500
Query 1498 AAAGCTTCGAGGCAGTACTCGAGGGACCTGTTTAAGTGTCTTAGTCTTAAGCTCATGCAA 1557
|||||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||
Sbjct 1501 AAAGCTTCGAGGCAGTACTCGAGGGACCGGTTTAAGAGTCTTAGCCTTAAGCTGATGCAA 1560
Query 1558 GATGGGTCCTTGCAGTCTAATGGAGATACAAAGTAG 1593
|||||||||||||||||||||||||||||||| |||
Sbjct 1561 GATGGGTCCTTGCAGTCTAATGGAGATACAAAATAG 1596
> Ahg938735 jgi|Araly1|938735|scaffold_502926.1
Length=1659
Score = 1256 bits (680), Expect = 0.0
Identities = 1237/1503 (82%), Gaps = 49/1503 (3%)
Strand=Plus/Plus
Query 109 CTTAAGCTTATCGTGTTGAAGGAACCAACGGGTCATGAGATCAAG-CAGAAATATAAATT 167
|||||||||||||| ||||| || ||||| |||| ||||||| || | ||||| | ||
Sbjct 156 CTTAAGCTTATCGTCTTGAATGATCCAACAGGTCGTGAGATCGAGTC-CAAATACACGTT 214
Query 168 AGGTCGTGAGTTAGGTCGAGGAGAGTTCGGTGTGACGTATCTGTGCACCGAGATCGAGAC 227
|| | |||||||| || ||||| |||||||| |||||||| || || || | |||||
Sbjct 215 GGGGAGAGAGTTAGGCCGTGGAGAATTCGGTGTCACGTATCTTTGTACTGATAAGGAGAC 274
Query 228 CGGAGA-GATTTTCGCATGCAAATCAATCTTAAAGAAGAAGCTGAAAAC-GTC-GATTGA 284
|| || | |||| || || ||||| || || ||||||||||||| || | | | ||||
Sbjct 275 AGGCGACG-TTTTTGCTTGTAAATCGATTTTGAAGAAGAAGCTGAGGACAG-CTG-TTGA 331
Query 285 TATAGAGGACGTTAAGAGAGAAGTTGAGATCATGAGGCAAATGCCTGAACATCCTAATAT 344
||| ||||| |||| |||||||||||||||||||||||| |||||||| ||||| ||| |
Sbjct 332 TATTGAGGATGTTAGGAGAGAAGTTGAGATCATGAGGCATATGCCTGAGCATCCAAATGT 391
Query 345 TGTTACTTTGAAAGAGACTTATGAGGATGATAAAGCTGTGCATTTGGTTATGGAGCTTTG 404
|||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||
Sbjct 392 TGTTACTTTGAAGGAGACTTTTGAGGATGACCATGCTGTGCATTTGGTTATGGAGCTTTG 451
Query 405 TGAAGGCGGTGAGCTT-TTCGATAGGATTGTTGCTAGAGGGCATTATACGGAGAGAGCTG 463
|||||| ||||| || || ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 452 TGAAGGTGGTGA-ATTGTTTGATAGGATTGTGGCTAGAGGGCATTATACCGAGAGAGCTG 510
Query 464 CTGCTTCGGTTATTAAAACGATCATCGAGGTTGTTCAGATGTGTCATAAGCATGGAGTAA 523
||||| | || | ||| || ||||| || ||||||||| ||||||| |||||||| ||||
Sbjct 511 CTGCTGCTGTCACTAAGACCATCATGGAAGTTGTTCAGGTGTGTCACAAGCATGGGGTAA 570
Query 524 TGCACAGAGATTTAAAACCTGAGAACTTCTTGTTTGCAAACAAGAAGGAAACTGCATCTT 583
||||||| || | |||||||||||||||||||||| |||||||||||| |||||| ||
Sbjct 571 TGCACAGGGACCTGAAACCTGAGAACTTCTTGTTTGGAAACAAGAAGGAGACTGCACCTC 630
Query 584 TGAAGGCTATTGATTTTGGTCTCTCTGTTTTCTTTAAACCAGGCGAGAGATTTAACGAAA 643
| ||||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 631 TCAAGGCCATTGATTTCGGTCTCTCTGTTTTCTTTAAACCAGGCGAGAGGTTTGACGAAA 690
Query 644 TTGTTGGGAGTCCTTACTACATGGCTCCTGAGGTATTAAGGA-GGAGTTATGGACAAGAA 702
| ||||| ||||| |||||||||||||| ||||| ||| | ||| |||||| | ||||
Sbjct 691 TCGTTGGTAGTCCGTACTACATGGCTCCCGAGGTGCTAAA-ACGGAATTATGGTCCAGAA 749
Query 703 ATTGACATTTGGAGCGCAGGAGTGATTCTTTACATATTGCTCTGTGGTGTTCCACCTTTT 762
||||||||||||| || || || ||||| |||||| ||||||||||||| || |||||
Sbjct 750 GTTGACATTTGGAGTGCCGGTGTAATTCTCTACATACTGCTCTGTGGTGTCCCGCCTTTC 809
Query 763 TGGGCAGAAACCGAACATGGAGTCGCAAAAGCAATTC-TTAAATCTGTAATTGACTTTAA 821
||||||||||| ||||| ||||| ||| ||||||| | || ||||||| | ||||| |
Sbjct 810 TGGGCAGAAACTGAACAAGGAGTTGCACAAGCAAT-CATTCGATCTGTACTGGACTTCAG 868
Query 822 AAGAGACCCCTGGCCTAAAGTTTCTGATAATGCAAAAGATCTGATCAA-AAAGATGCTTC 880
||| ||||| ||||| ||||||||||| || |||||||| || |||| ||| ||||||
Sbjct 869 AAGGGACCCATGGCCCAAAGTTTCTGAAAACGCAAAAGACCTTATCAGGAAA-ATGCTTG 927
Query 881 ATCCTGATCCAAG-GCGTCGTCTAACTGCTCAACAAGTGCTTGATCATCCGTGGATACAG 939
||||||| |||| ||||||||| || ||||||||||| || |||||||||||| |||||
Sbjct 928 ATCCTGA-CCAAAAGCGTCGTCTTACAGCTCAACAAGTCCTAGATCATCCGTGGTTACAG 986
Query 940 AATGGTAAGA-ATGCTTCCAATGTATCATTGGGTGAAACCGTAAGAGCAAGGCTT-AAGC 997
|||| |||| | ||| |||||||||||||||||||||| || || |||||| || ||||
Sbjct 987 AATGCAAAGACA-GCTCCCAATGTATCATTGGGTGAAACAGTGAGGGCAAGG-TTGAAGC 1044
Query 998 AATTCT-CTGTTATGAACAAGCTCAAGAAAAGGGCACTCAGGGTTATCGCTGAGCATCTA 1056
| || | | || |||||||||||||||||| | |||||||||||||| ||||||||| ||
Sbjct 1045 AGTT-TACCGTCATGAACAAGCTCAAGAAACGAGCACTCAGGGTTATTGCTGAGCATTTA 1103
Query 1057 TCGGTTGAAGAAACATCTTGCATAAAAGAAAGATTCCAAGTAATGGATACAAGC-AATAG 1115
|| | ||||||| | || | |||| |||| | |||||| ||||||| |||||| || ||
Sbjct 1104 TCAGATGAAGAAGCTTCAGGTATAAGAGAAGGGTTCCAAATAATGGACACAAGCCAA-AG 1162
Query 1116 AGGAAAGATTACTATC-ACCGAGCT-AGGAATCGGATTGCAGAAACTCGGG-ATTGTTGT 1172
||| ||||||| |||| || ||||| | |||||| ||||||||||| || || | |
Sbjct 1163 AGGGAAGATTAATATCGAC-GAGCTTAA-AATCGGGTTGCAGAAACTTGGTCAT-GCCAT 1219
Query 1173 TCCTCAAGATGA-CATTCAAATAT-TGATGGACGCGGGAGATGTTGATAAAGATGGATAT 1230
||| |||||||| | | ||||| | ||||||| || |||||| | || | ||||||||||
Sbjct 1220 TCCCCAAGATGATC-TACAAAT-TCTGATGGATGCTGGAGATATCGACAGAGATGGATAT 1277
Query 1231 TTAGAC-GTCAATGAATTTGTAGCCATATCGGTACACATCAGGAAGTTAGGCAACGACGA 1289
|| ||| || | || ||| | ||||||||||||||| | ||||| | ||||| |||||
Sbjct 1278 TTGGACTGTGAC-GAGTTTATTGCCATATCGGTACACCTAAGGAAAATGGGCAATGACGA 1336
Query 1290 GCA-CTTAAAGAAAGCTTTTACGTTCTTTGA-CAAAAACAAGAGTGGTTATATCGAAATA 1347
||| || || |||||| ||| |||||||||| ||||| ||| | || ||||||||||||
Sbjct 1337 GCATCTCAA-GAAAGCATTTGCGTTCTTTGATCAAAA-CAATAACGGATATATCGAAATA 1394
Query 1348 GAGGAGTTAAGAGATGCTTTGGCAGATGATGTTGACACTACTAGTGAAGAAGTTGTTGAA 1407
||||||||||| || || ||| | || || ||| || | || ||||||||||||||
Sbjct 1395 GAGGAGTTAAGGGAAGCATTGTCTGACGAACTTGGTAC-A--AGCGAAGAAGTTGTTGAT 1451
Query 1408 GCCATTATTCTTGATGTCGATACCAATAAGGATGGGAA-AATAAGTTACGACGAATTTGC 1466
|||||||||| |||||| |||||| |||||||||| || |||||||||||| || ||||
Sbjct 1452 GCCATTATTCGTGATGTTGATACCGATAAGGATGG-AAGAATAAGTTACGAAGAGTTTGT 1510
Query 1467 AACGATGATGAAAACGGGAACGGATTGGAGAAAAGCTTCGAGGCAGTACTCGAGGGACCT 1526
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| || |
Sbjct 1511 GACGATGATGAAAACAGGAACAGATTGGAGAAAAGCATCGAGACAGTACTCGAGAGAACG 1570
Query 1527 GTTTAAGTGTCTTAGTCTTAAGCTCATGCAAGATGGGTCCTTGCAG-TCTAATGGAGATA 1585
|||||| || | ||||| || || |||||||||| ||| |||||| | |||||| ||||
Sbjct 1571 GTTTAACAGTATCAGTCTCAAACTGATGCAAGATGCGTCGTTGCAGGT-TAATGGTGATA 1629
Query 1586 CAA 1588
|||
Sbjct 1630 CAA 1632
> Ahg485540 jgi|Araly1|485540|fgenesh2_kg.5__1532__AT3G51850.1
Length=2080
Score = 457 bits (247), Expect = 2e-127
Identities = 582/741 (79%), Gaps = 34/741 (5%)
Strand=Plus/Plus
Query 239 TCGCATGCAAATCAATCTTAAAGAAGAAGCTGAAAACGTCGAT-T-GATATAGAGGACGT 296
|||| ||||| || |||| |||| |||||| | || | | | | ||||| ||||| ||
Sbjct 394 TCGCTTGCAAGTCGATCTCGAAGAGGAAGCTTAGGAC-T-GCTGTGGATATTGAGGATGT 451
Query 297 TAAGAGAGAAGTTGAGATCATGAGGCAAATGCCTGAACA-TCCTAATATTGTTACTTTGA 355
||| |||||||| | ||| |||| ||| ||||| || | | | | ||||||||||||||
Sbjct 452 TAAAAGAGAAGTGGCGATTATGAAGCATTTGCCT-AAGAGTTCGAGTATTGTTACTTTGA 510
Query 356 AAG-AGACTTATGAGGATGATAAAGCTGTGCATTTGGTTATGGAGCTTTGTGAAGGCGGT 414
| | || ||| |||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 511 AGGAAG-CTTGTGAGGATGATAATGCTGTGCATTTGGTTATGGAGCTTTGTGAAGGTGGT 569
Query 415 GAGCTTTTCGATAGGATTGTTGCTAGAGGGCATTATACGGAGAGAGCTGCTGCTTCGGTT 474
|||||||||||| |||||||||| |||||||||||||||||| | ||||||||| ||||
Sbjct 570 GAGCTTTTCGATCGGATTGTTGCGAGAGGGCATTATACGGAGCGTGCTGCTGCTGGGGTT 629
Query 475 ATTAAAACGATCATCGAGGTTGTTCAGA-TGTGTCATAAGCATGGAGTAATGCACAGAGA 533
| ||| ||||| | |||||||| || | | || ||||||||||| || || || |||||
Sbjct 630 ACTAAGACGATTGTTGAGGTTGTGCA-ACTTTGCCATAAGCATGGTGTGATTCATAGAGA 688
Query 534 TTTAAAACCTGAGAACTTCTTGTTTGCAAACAAGAAGGA-AACT-GCATCTTTGAAGGCT 591
||| || || ||||| || ||||| || ||||||||||| |||| || | ||||| |||
Sbjct 689 TTTGAAGCCGGAGAATTTTTTGTTCGCTAACAAGAAGGAGAACTCGC--CGTTGAAAGCT 746
Query 592 ATTGATTTTGG-TCTCTCTG-TTTTCTTTAAACCAGGCGAGAGATTTAAC-GAAATTGTT 648
||||||||||| | | || | ||||||| || ||||| |||| | || | || ||||||
Sbjct 747 ATTGATTTTGGAT-TGTC-GATTTTCTTCAAGCCAGGTGAGA-AGTTCTCCGAGATTGTT 803
Query 649 GGGAGTCCTTACTACATGGCTCCTGAGGTA-TTAAGGAGGAGTTATGGACAAGAAATTGA 707
|||||||| || |||||||| |||||||| ||||| ||| ||||||| ||||| ||
Sbjct 804 GGGAGTCCATATTACATGGCACCTGAGGTGCTTAAGC-GGAACTATGGACCCGAAATAGA 862
Query 708 CATTTGGAGCGCAGGAGTGATTCTTTACATAT-TGCTCTGTGGTGTTCCACCTTTTTGGG 766
|||||||| || |||||||||||||| || | || | ||||| ||||| || || ||||
Sbjct 863 TATTTGGAGTGCTGGAGTGATTCTTTATAT-TCTGTTGTGTGGAGTTCCCCCATTCTGGG 921
Query 767 CAGAAACCGAACATGGAGTCGCAAAAGCAATTCTTAAATCTGTAATTGACTTTAAAAGAG 826
|||| | ||||| ||||| || | || ||||| |||||||| ||||| || |
Sbjct 922 CAGAGTCAGAACAGGGAGTTGCTCAGGCTATTCTGCGCGGGGTAATTGATTTTAAGAGGG 981
Query 827 ACCCCTGGCCTAA-AGTTTCTGATAATGCAAAAGA-TCT-GATCAAA-AAGATGCTTC-A 881
| || ||||| || | ||||||| | || || || ||| | ||| | || ||| || |
Sbjct 982 AACCGTGGCCAAACA-TTTCTGAGACCGCTAA-GAATCTAG-TCAGACAA-ATG-TTAGA 1036
Query 882 TCCTGATCCAAGGCGTCGTCTAACTGCTCAACAAGTGCTTGATCATCCGTGGATACAGAA 941
|||||||||| |||||| || ||||| ||||||||||||| || || ||||| |||||
Sbjct 1037 GCCTGATCCAAAGCGTCGGCTGACTGCAAAACAAGTGCTTGAGCACCCATGGATTCAGAA 1096
Query 942 TGGTAAGAATGCTTCCAATGT 962
| ||||| ||| |||||||
Sbjct 1097 CGCAAAGAAAGCTCCCAATGT 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71190667905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5