BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41870.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483270 jgi|Araly1|483270|fgenesh2_kg.4__2330__AT2G41870.1 1223 0.0
Ahg486202 jgi|Araly1|486202|fgenesh2_kg.5__2194__AT3G57540.1 396 3e-109
> Ahg483270 jgi|Araly1|483270|fgenesh2_kg.4__2330__AT2G41870.1
Length=1374
Score = 1223 bits (662), Expect = 0.0
Identities = 877/978 (90%), Gaps = 25/978 (3%)
Strand=Plus/Plus
Query 394 TTCCTAAACCCTATTTCTCAGATTATGCTGACTCTTTACCATCAAGAAAGGTCACCGGAC 453
||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 354 TTCTTAAACCCTAATTCTCAGATTATGCTGACTCTTTACGATCATGAAAGGTCACCGGAC 413
Query 454 GCCACAAGTAATGATC--G-CGATGAGACGCCAGAGACTGTGGTTAGAGA-AGTCCACGC 509
||||||||||| | | | ||||||||| | ||||||||||| ||||| | |||||||
Sbjct 414 GCCACAAGTAACCACCAGGATGATGAGACGACGGAGACTGTGGTGAGAGACA-TCCACGC 472
Query 510 GCTAACTCCAGCGCCGGAGGATAATTCCCGGACGATGACGGCGACG-C--TACCTCCACC 566
| |||||||||| ||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 473 GGTAACTCCAGCTCCGGAGGATAATTCCCGGACGATGACGGCGACGACGTTGCCTCCACC 532
Query 567 GCCTGCTTTCCGAGGCTATTTTTCTCCTCCAAGGTCAGCGACGACGATGAGCGAAGGA-- 624
||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||
Sbjct 533 GCCTGCTTTCCGAGGCTATTTTTCTCCTCCACGGTCAACAACGACCATGAGCGAAGGAGC 592
Query 625 ----------GAGAACTTCACAACTATAAGCAGAGAGTTCAACGCTCTAGTCATCGCCGG 674
|| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 593 TTCTTCCGGCGAAAACTTCACAACAATAAGCAGAGAGTTCAACGCTCTAGTCATCGCCGG 652
Query 675 ATCCTCCATGGAGAACAACGAACTAATGACTCGTGACGTCACGCAGCGTGAAGATGAGAG 734
||||||||||| ||||| |||| || | ||||||||||||| |||||||||||||| ||
Sbjct 653 CTCCTCCATGGAAAACAATGAACCAACGGCTCGTGACGTCACACAGCGTGAAGATGAAAG 712
Query 735 ACAAGACGAGTTGATGAGAATCCACGAGGACACGGATCATGAAGAGGAAACGAATCCTTT 794
|||| |||| ||| |||| |||| |||||| | |||||| ||||| || ||||| |||||
Sbjct 713 ACAACACGACTTGTTGAGGATCCTCGAGGAGAGGGATCAAGAAGACGAGACGAACCCTTT 772
Query 795 AGCAATCGTGCCGGATCAGTATCCTGGTTCGGGTTTGGATCCTGGAAGTGATAATGGGCC 854
|||||||| ||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 773 GGCAATCGTTCCGGACCAGTATCCGGGTTCGGGTTTGGATCCTGGAAGTGAGATTGGGCC 832
Query 855 GGGTCAGAGTCGGGTTGGG-TCGACGGTGCAAAGAGTTAAGAGGGAAGAGGTGGAAGCGA 913
||||||| |||| |||||| | ||||||||||| ||| |||||||||||||| || ||||
Sbjct 833 GGGTCAGGGTCGAGTTGGGAT-GACGGTGCAAATAGTGAAGAGGGAAGAGGTTGAGGCGA 891
Query 914 AGATAACGGCGTGGCAGACGGCAAAACTGGCTAAGATTAATAACAGGTTTAAGAGGGAAG 973
|||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 892 AGATAACGGCGTGGCAGACGGCAAAATTGGCAAAGATCAATAACAGGTTTAAGAGGGAAG 951
Query 974 ACGCCGTTATTAACGGTTGGTTTAATGAACAAGTTAACAAGGCCAACTCTTGGATGAAGA 1033
|| ||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||
Sbjct 952 ACACCGTTATTAACGGTTGGGTTAATGAACAAGTCCACAAGGCCAATTCTTGGATGAAGA 1011
Query 1034 AAATTGAGAGGAAGCTAGAGGAGAGAAAAGCAAAAGCGATGGAGAAAACGCAAAACAATG 1093
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1012 AAATTGAGAGGAAGCTAGAGGAGAAAAAAGCAAAAGCAATGGAGAAAACGCAAAACAATG 1071
Query 1094 TGGCGAAAGCGCAGAGGAAAGCGGAGGAGAGAAGAGCGACGGCAGAGGCAAAGAGAGGGA 1153
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1072 TGGCGAAAGCGCAGAGGAAAGCGGAAGAGAGAAAAGCGACGGCAGAGGCAAAGAGAGGGA 1131
Query 1154 CAGAGGTTGCAAAAGTAGTTGAAGTTGCTAATCTCATGAGAGCCCTTGGACGTCCTCCTG 1213
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1132 CAGAGGTTGCAAAAGTAGTTGAAGTTGCTAATCTCATGAGAGCCGTTGGACGTCCTCCTG 1191
Query 1214 CCAAACGCTCCTTCTTCTCTTTCTCCTAATTTTTAGTTATATCAAACCATTAAATTAAAC 1273
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1192 CCAAACGCTCCTTCTTCTCTTTCTCCTAGTTTTTAGTTATATCAAACCATTAAACTAAAC 1251
Query 1274 AGTACTCGTTATATATCTAGTTAGTAAACAAAGGGGC-AGTTTTATAGCTCATGTACACA 1332
| |||| || ||||| |||||||||| |||| ||| | |||||||||| || ||||||
Sbjct 1252 ATTACTTATTGTATATA-AGTTAGTAAAGAAAGAGGCCA-TTTTATAGCTTATATACACA 1309
Query 1333 TAATTGAGAGTGTAGTAC 1350
|| |||||||||||||||
Sbjct 1310 TAGTTGAGAGTGTAGTAC 1327
Score = 429 bits (232), Expect = 3e-119
Identities = 322/363 (89%), Gaps = 15/363 (4%)
Strand=Plus/Plus
Query 8 TTGTTTTGCTCTTTAGAAATTACCG--A---TTTACG-CTGAAAAAATGTGAAAAATACA 61
||||||||| |||||||||| |||| | |||| | || ||||||||||||||| |
Sbjct 1 TTGTTTTGCCCTTTAGAAATCACCGCAAGGTTTTA-GATTG-AAAAATGTGAAAAATTTA 58
Query 62 ATCGATCGCATTATCTTTATCCCTAGCTAATCATTCATGTACAAGCATGTCTCCGAAGGT 121
||||||||||||| ||| || |||||||||||||||| ||| ||||||||||||||||
Sbjct 59 GTCGATCGCATTATTTTTGTCTCTAGCTAATCATTCATAAACAGGCATGTCTCCGAAGGT 118
Query 122 TAAAAGCAGTCGCTA-TTTACCGGACCAACGTAGTTTTCTCGAAGTGGTGGTCCGTTGTC 180
||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 119 TAAAAGCAGTCGCTATTTTACCGGACCAACGTAGTTTTCACAAAGTGGTGGTCCGTTGTC 178
Query 181 ATATTTTAAATTTATCACCTTCTTGAGAATTCCACATTTTTATCCTTTTTGTCATGTAGT 240
|||||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct 179 ATATTTTAAAATTATCACCTTCTTGAGAATTCTACATTTTAATCCTTTTTGTCGTGTAGT 238
Query 241 GTATATTTTTTCCTCT-AACCTAATTAAAATCAAAAC-AAAATCCTTTG-ACCCAATTAG 297
| ||| || ||||||| || ||||||||| || ||| |||| |||||| ||| | ||||
Sbjct 239 G-ATA-TTGTTCCTCTAAATCTAATTAAAGTCGGAACTAAAA-CCTTTGAACCTATTTAG 295
Query 298 CTTCGCGATATATCAGAAGAGATCAAACTACTTTGATCAGACCATGAtcttcttcttctt 357
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTTCGCGAGATATCAGAAGAGATCAAACTACTTTGATCAGACCATGATCTTCTTCTTCTT 355
Query 358 ctt 360
|||
Sbjct 356 CTT 358
Score = 62.1 bits (33), Expect = 1e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1420 ATTCAACTTAATTTTGATTTTTGAATAATGCGTTTG 1455
||||||| ||||||||||||||||||||||||||||
Sbjct 1339 ATTCAACGTAATTTTGATTTTTGAATAATGCGTTTG 1374
> Ahg486202 jgi|Araly1|486202|fgenesh2_kg.5__2194__AT3G57540.1
Length=1154
Score = 396 bits (214), Expect = 3e-109
Identities = 316/366 (86%), Gaps = 4/366 (1%)
Strand=Plus/Plus
Query 878 CGGTGCAAAGAGTTAAGAGGGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAGACGGCAA 937
||||||| || || ||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 665 CGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAAACGGCGA 724
Query 938 AACTGGCTAAGATTAATAACAGGTTTAAGAGGGAAGACGCCGTTATTAACGGTTGGTTTA 997
|| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 725 AAGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGTTGGTTGA 784
Query 998 ATGAACAAGTTAACAAGGCCAACTCTTGGATGAAGAAAATTGAGAGGAAGCTAGAGGAGA 1057
|||| || ||| | || || |||||||||||||||||||| |||||||| | || || |
Sbjct 785 ATGAGCAGGTTCATAAAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAATTGGAAGATA 844
Query 1058 GAAAAGCAAAAGCGATGGAGAAAACGCAAAACAATGTGGCGAAAGCGCAGAGGAAAGCGG 1117
| | |||||| |||||||||||||| |||||||| ||||| ||||| || ||||| ||||
Sbjct 845 GGAGAGCAAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAAAGGAAGGCGG 904
Query 1118 AGGAGAGAAGAGCGACGGCAGA-GGCAAAGAGAGGGACAGAGGTTGCAAAAGTAG-TTGA 1175
||||||| |||||||||||||| || ||| |||||||| |||||||| | || | ||||
Sbjct 905 AGGAGAGGAGAGCGACGGCAGAAGGAAAA-AGAGGGACGGAGGTTGCGAGGGT-GCTTGA 962
Query 1176 AGTTGCTAATCTCATGAGAGCCCTTGGACGTCCTCCTGCCAAACGCTCCTTCTTCTCTTT 1235
||| |||||||| ||||||||| | ||||| ||||| |||||||| ||||||||| ||||
Sbjct 963 AGTCGCTAATCTAATGAGAGCCGTGGGACGACCTCCGGCCAAACGATCCTTCTTCACTTT 1022
Query 1236 CTCCTA 1241
||||||
Sbjct 1023 CTCCTA 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5