BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41880.1
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902166 jgi|Araly1|902166|Al_scaffold_0004_2816 1794 0.0
Ahg486203 jgi|Araly1|486203|fgenesh2_kg.5__2195__AT3G57550.1 1048 0.0
> Ahg902166 jgi|Araly1|902166|Al_scaffold_0004_2816
Length=1164
Score = 1794 bits (971), Expect = 0.0
Identities = 1103/1166 (95%), Gaps = 12/1166 (1%)
Strand=Plus/Plus
Query 246 ATGGGAGAAGCTCCAGCAGTATT-AGTGGATCATCCGGAGAACGGACACTCCAATGGTGT 304
|||||||||||||||||| | || ||||||||||| |||||||||||||| |||||| ||
Sbjct 1 ATGGGAGAAGCTCCAGCAAT-TTCAGTGGATCATCTGGAGAACGGACACTTCAATGGCGT 59
Query 305 CTGTGTGAAATCTGAACCAGAGAACACTGAGATAACAGTCGATGTCGGCGATCGAATATT 364
|||||||||||||| ||| ||||||| ||||||| |||| |||| ||||||||||| ||
Sbjct 60 CTGTGTGAAATCTGCACCCGAGAACATTGAGATATCAGTAGATGCCGGCGATCGAA-CTT 118
Query 365 TT-TGATCGGTGGAACTCATGAAAGGAACAATTTTTCCATTGGGGTTCAGATTTATGACA 423
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTGTGATCGGTGGAAATCATGAAAGGAACAATTTTTCCATTGGGGTTCAGATTTATGACA 178
Query 424 AAATCAGTAACAACTGGTTTAGTCCTATTGTGCTTGGGACAGGTCCTAAGCCCAGCAAGG 483
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 179 AAATCATTAACAATTGGTTTAGTCCTATTGTGCTTGGGACAGGTCCTAAGCCCAGCCAGG 238
Query 484 GGTACTCCGCGTTTGTTCTTGAACAAGGTCGGATTTTGGTTATTAAAAAAGGTTCACCTC 543
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 239 GGTACTCTGCGTTTGTTCTCGAACAAGGTCGGATTTTGGTTATTAAGAAAGGTTCACCTC 298
Query 544 GCAACGACTCCATCTGGTTCCTCGAGGTCGATAGTCCTTATGTGCGGGAACAGAAGAAGT 603
| || || |||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 299 GAAATGAATCCATCTGGTTCCTCGAGGTAGATAGTCCATATGTGCGGGAACAGAAGAAAT 358
Query 604 TACTAAGGAAGGAAGTTGTTGCTTGGAGTAAAGGTGTGAGAGGCAATGCTGAGAAGCCTA 663
||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 359 TACTAGGGAAGGAAGTTGTTGCGTGGAGTAAAGGTGTGAGAGGCAATGCCGAGAAGCCTA 418
Query 664 TTGTTATAAGCGGTCCTTCTGGTGTGGGCAAAGGAACGCTTATATCAATGCTTATGAAGG 723
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 419 TTGTTATAAGCGGTCCTTCTGGAGTTGGAAAAGGAACGCTTATATCAATGCTTATGAAGG 478
Query 724 AGTTTCCTTCAATGTTTGGGTTCTCTGTGAGTCACACAACTCGATCTCCGAGGTCTATGG 783
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 479 AGTTTCCTTCAATGTTTGGGTTCTCAGTGAGCCACACAACTCGATCTCCAAGGTCTATGG 538
Query 784 AGATG-GACGGTGTTCATTATCACTTTGCTGATAAAAAAGTTATGGAGAAAGAAATCAAA 842
||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGA-GAGATGGTGTTCATTATCACTTTGCTGATAAAAAAGTTATGGAGAAAGAAATCAAA 597
Query 843 GACGGAAAGTTTCTTGAGTTTGCTTCTGTTCACGGTAATCTCTATGGAACCAGCATTGAG 902
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 598 GATGGAAAGTTTCTTGAGTTTGCTTCTGTTCATGGTAATCTCTATGGAACCAGCATTGAG 657
Query 903 TCCGTTGAAG-CGGTAACAGATTCAGGAAAGAGATGTATTCTCGACATTGATGTTCAGGG 961
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCCGTTG-AGATGGTAACAGATTCAGGAAAGAGATGTATTCTCGACATTGATGTTCAGGG 716
Query 962 GGCAAGGTCTGTGAGAGCGAGTTCTCTTGATGCCATATTCATATTCGTATGTCCCCCTTC 1021
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 717 GGCAAGGTCTGTGAGAGCGAGTTCTCTTGATGCCATATTCATATTCGTGTGTCCCCCTTC 776
Query 1022 AATGAAAGAGCTTGAAGATCGGCTCCGTGCTAGAGGAACCGAGACAGAGGAGCAAATTCA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AATGAAAGAGCTTGAAGATCGGCTCCGTGCTAGAGGAACCGAGACAGAGGAGCAAATTCA 836
Query 1082 AAAGCGGCTTAGAAATGCTGAGGCAGAGATCAAAGAAGGGATATCCTCGGGTATTTTCGG 1141
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 837 AAAGCGGCTTAGAAATGCTGAGGCAGAGATGAAAGAGGGGATATCCTCGGGTATTTTCGG 896
Query 1142 TCTCATTTTGTATAATGACAACCTTGAGGAATGCTACAAGAAGCTCAAGAATCTCTTGGG 1201
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 897 TCTCATTTTGTATAATGACAACCTTGAGGAATGCTACAAGAAGCTCAAGAAACTCTTGGG 956
Query 1202 GCTAGATGGACTCGCT-CATGTCAATGGTGTAGAAATAGAGGGGATCAATCTTCCCATTG 1260
|||||||||| || || | |||||||||||||||||| || |||||||||||||||| |
Sbjct 957 GCTAGATGGAGTCACTTC-TGTCAATGGTGTAGAAATTGAAGGGATCAATCTTCCCACCG 1015
Query 1261 AGTACGCAGTATCTAAAATGGAAGATAAGATCATTATTCAAGAAACAGGAAAAGAAACAA 1320
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGCACACAGTATCTAAAATGGAAGATAAGATCATTATTCAAGAAACAGGAAAAGAAACAA 1075
Query 1321 GGAAT-AAGATTGTAGTGGATATATCTTCGCTTAATGGAGGAGCACCGGGTAGAACAAGG 1379
||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GGA-TCAAGATTGTATTGGATATATCTTCGCTTAATGGAGGAGCACCGGGTAGAACAAGG 1134
Query 1380 GGGATTCTTGTCGACGCCATTAAGTT 1405
|||||||||||||||||||| |||||
Sbjct 1135 GGGATTCTTGTCGACGCCATAAAGTT 1160
> Ahg486203 jgi|Araly1|486203|fgenesh2_kg.5__2195__AT3G57550.1
Length=1761
Score = 1048 bits (567), Expect = 0.0
Identities = 997/1202 (83%), Gaps = 40/1202 (3%)
Strand=Plus/Plus
Query 205 AGGCTGTGTTGTTGTTCTTCTTGGAGGCATAGAATCTTTCTATGGGAGAAGCTCCAGCAG 264
||||||||||| || ||||||||||||||||||| | |||||||||||||| |||||
Sbjct 298 AGGCTGTGTTG-TG-TCTTCTTGGAGGCATAGAAAATCTCTATGGGAGAAGCACCAGCTT 355
Query 265 TATTAGTGGATCATCCGGAGAACGGACACTCCAATGGTGTCT-GTGTGAAATCTGAACC- 322
| || |||||||||| |||| | ||| || ||||||| | | |||| ||||| || ||
Sbjct 356 TCTTTGTGGATCATCTGGAGGATGGATACACCAATGG-CTTTGGTGTCAAATCCGAGCCT 414
Query 323 AGAGAACACTGAGATA--ACAGTCGATGTCGGCGATCGAAT-ATTTTTGATCGGTGGAAC 379
| |||||| |||||| | ||| | | || ||||| || ||| |||| |||||||
Sbjct 415 A-AGAACA--GAGATACTTCTGTCCAAATTGGGGATCG-ATCCTTTGTGATTGGTGGAAA 470
Query 380 TCATGAAAGG-AA-CAATTTTTCCATTGGGGTTCAGATTTATGACAAAATCAGTAACAAC 437
||||| |||| || | ||| |||| |||| ||||||||| |||||||||||| ||||||
Sbjct 471 TCATG-AAGGAAACCCATTGTTCC-TTGGTGTTCAGATTCATGACAAAATCACTAACAAG 528
Query 438 TGGTTTAGTCCTATTGTGCTTGGGACAGGTCCTAAGCCCAGCAAGGGGTACTCCGCGTTT 497
|||| ||| |||| ||| ||||| || || ||||| ||| ||||||| ||||| || ||
Sbjct 529 TGGTCTAGCCCTACTGTTCTTGGAACCGGCCCTAAACCCTGCAAGGGTTACTCTGCCATT 588
Query 498 GTTCTT-GAACAAGGTCGGATTTTGGTTATTAAAAAAGGTTCA-CCTCGCAACGACTCCA 555
|||||| || ||||||||||||||||||| |||||||| ||| | || | |||||||
Sbjct 589 GTTCTTCCAA-AAGGTCGGATTTTGGTTATCAAAAAAGGCTCAGCTTC-TGATGACTCCA 646
Query 556 TCTGGTTCCTCGAGGTCGATAGTCCTTATGTGCGGGAACAGAAGAAGTTACTAAGGAAG- 614
| |||||||| ||||| || | ||||| | | |||||||| ||||| || || |||||
Sbjct 647 TTTGGTTCCTTGAGGTTGACACTCCTTTTATCCGGGAACAAAAGAAATTGCT-TGGAAGA 705
Query 615 GAAGTTGTTGCTTGGAGTAAAGGTGTGAGAGGCAATGCTGAGAAGCCTATTGTTATAAGC 674
|| |||||||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 706 GAGGTTGTTGCTTGGAGTAAAGGAGTAAGGGGAAATGCTGAGAAGCCTATTGTTATAAGC 765
Query 675 GGTCCTTCTGGTGTGGGCAAAGGAACGCTTATATCAATGCTTATGAAGGAGTTTCCTTCA 734
||||||||||| || || |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 766 GGTCCTTCTGGAGTTGGAAAAGGAACACTTATATCGATGCTTATGAAGGAGTTTCCTTCA 825
Query 735 ATGTTTGGGTTCTCTGTGAGTCACACAACTCGATCTCCGAGGTCTATGGAGATGGACGGT 794
|||||||||||||||||||| || ||||||||| |||| |||| |||||||| | | |||
Sbjct 826 ATGTTTGGGTTCTCTGTGAGCCATACAACTCGAGCTCCAAGGTGTATGGAGAAGAATGGT 885
Query 795 GTTCATTATCACTTTG-CTGATAAAAAAGTTATGGAGAAAGAAATCAAAGACGGAAAGTT 853
||||| || || ||| ||||||| | |||||||||||||||||||||||||| |||||
Sbjct 886 GTTCACTACCA-TTTCACTGATAAGACTGTTATGGAGAAAGAAATCAAAGACGGGAAGTT 944
Query 854 TCTTGAGTTTGCTTCTGTTCACGGTAATCTCTATGGAACCAGCATTGAGTCCGTTGAAGC 913
||| |||||||| |||||||| |||||||| || |||||||||||||| || ||||| |
Sbjct 945 TCTCGAGTTTGCGTCTGTTCATGGTAATCTATACGGAACCAGCATTGAATCTGTTGAGGT 1004
Query 914 GGTAACAGATTCAGGAAAGAGATGTATTCTCGACATTGATGTTCAGGGGGCAAGGTCTGT 973
||||||||||||||||||||||| ||| | |||||||||||||| || || ||||| ||
Sbjct 1005 TGTAACAGATTCAGGAAAGAGATGCATTTTGGACATTGATGTTCAAGGAGCGAGGTCAGT 1064
Query 974 GAGAG-CGAGTTCTCTTGATGCCATATTCATATTCGTATGTCCCCCTTCAATGAAAGAGC 1032
|| || ||||||| || ||||| |||||||||||||| ||||| ||||||||||| || |
Sbjct 1065 GA-AGGCGAGTTCACTGGATGCGATATTCATATTCGTTTGTCCTCCTTCAATGAAGGAAC 1123
Query 1033 TTGAAGATCGGCTCCGTGCTAGAGGAACCGAGACAGAGGAGCAAATTCAAAAGCGGCTTA 1092
||||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 1124 TTGAAGATCGGCTTCGTGCTCGAGGAACCGAGACAGAGGAGCAGATCCAAAAGCGGCTTA 1183
Query 1093 GAAATGCTGAGGCAGAGATCAAAGAAGGGATATCCTCGGGTATTTTCGGTCTCATTTTGT 1152
|||| ||||| ||||||||||||| |||| |||||| || ||||| | | |||| |||
Sbjct 1184 GAAACGCTGAAGCAGAGATCAAAGCGGGGAAATCCTCTGGCATTTTTGAACACATTCTGT 1243
Query 1153 ATAATGACAACCTTGAGGAATGCTACAAGAAGCTCAAGAATCTCTTGGGGCTAGATGGAC 1212
||||||||||||||||||||||||||||||| || ||||| ||||||||| || | | ||
Sbjct 1244 ATAATGACAACCTTGAGGAATGCTACAAGAACCTTAAGAACCTCTTGGGGATAAACG-AC 1302
Query 1213 -TCGCTCATGTCAATGGTGTAGAA--A-TAGAGGGGATCAATCTTCCCATTGAGTACGCA 1268
| |||| ||| |||||||||||| | |||| |||||| |||| |||| ||| || ||
Sbjct 1303 CTTGCTCCTGTGAATGGTGTAGAAGCAGTAGAAGGGATCGATCTGCCCAAGGAGCACACA 1362
Query 1269 GTATCTAAA-ATGGAAGATAAGATCATT-ATTCAAGAAACAGGAAAAGAAAC-AAGGA-A 1324
||| | ||| ||||| || ||||| || ||||||||||||||| ||| ||| || | |
Sbjct 1363 GTAAC-AAAGATGGATGACAAGATT-TTGATTCAAGAAACAGGAGAAGGAACCAAAAACA 1420
Query 1325 TAA-GATTGTAGT-GGATATATCTTCGCTTAATGGAGGAGCACCGGGTAGAACAAGGGGG 1382
|| ||| || || |||| ||||||| |||| || ||||||||||| |||||||| |||
Sbjct 1421 AAATGATCGT-GTTGGATCTATCTTCTATTAACGGGGGAGCACCGGGAAGAACAAGAGGG 1479
Query 1383 AT 1384
||
Sbjct 1480 AT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58278074850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5