BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G41905.1

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483274 jgi|Araly1|483274|fgenesh2_kg.4__2334__AT2G41905.1         614    2e-175
  Ahg486219 jgi|Araly1|486219|fgenesh2_kg.5__2211__AT3G57690.1         226    1e-58 


> Ahg483274 jgi|Araly1|483274|fgenesh2_kg.4__2334__AT2G41905.1
Length=427

 Score =  614 bits (332),  Expect = 2e-175
 Identities = 400/431 (93%), Gaps = 12/431 (3%)
 Strand=Plus/Plus

Query  17   aaaaataataaaagtaaacaaaactaccaaaaaaaaaaacag-aaaaaaaCCTTTCAGGT  75
            ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1    AAAAACAAAAAAAGTAAACAAAACTACCAAAAAAAAAAACAGAAAAAAAACCTTTCAGGT  60

Query  76   CTCAACTAGCAATGGAGATGAAGAAGATTGCCTGCGGAGTCGTTTTCGCTGCTGCTTCCA  135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTCAACTAGCAATGGAGATGAAGAAGATTGCCTGCGGAGTCGTTTTCGCTGCTGCTTCCA  120

Query  136  TGACCGCCGTCATGGCTGCAGAGGTCGGAGCACCTGCACCAGGACCCGCCGCAAGTGGAG  195
            ||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||
Sbjct  121  TGACCGCCGTCATGGCTGCAGAGGTCGGAGCTCCGGCACCAGGACCCGCCGCCAGCGGAG  180

Query  196  CCTCCGTAGCTGTTCCGGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCTCTCTTCG  255
            ||||  |||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CCTCTATAGCCGTACCGGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCTCTCTTCG  240

Query  256  CCTACTACTTGAACTAAGCTTTTCTATTTAAAGCaaaaaaaGAAGAAATATCGATGTCTC  315
            ||||||||||||||||||||| |  |||||||| |||||| |||||||||| ||||||||
Sbjct  241  CCTACTACTTGAACTAAGCTTAT--ATTTAAAG-AAAAAA-GAAGAAATATTGATGTCTC  296

Query  316  TGTCAATTTCTATGATGTCCAATTTTGTGTGTGTTGTTTAGACAGGCAAAGTGAATAAAA  375
            ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGTCAATTTTTACAATGTCCAATTTTGTGTGTGTTGTTTAGACAGGCAAAGTGAATAAAA  356

Query  376  CGAAA-A-ATAA---TTTGATTACGGTCAGACATGTTTTTATGTAA--TGCTGATTAATA  428
            ||||| | | ||   |||||| | ||||||||||||||||||||||  ||||||||||||
Sbjct  357  CGAAAGAGAAAACAATTTGATAATGGTCAGACATGTTTTTATGTAAAATGCTGATTAATA  416

Query  429  AATATATATAT  439
            ||||||| |||
Sbjct  417  AATATATGTAT  427


> Ahg486219 jgi|Araly1|486219|fgenesh2_kg.5__2211__AT3G57690.1
Length=362

 Score =  226 bits (122),  Expect = 1e-58
 Identities = 209/248 (84%), Gaps = 18/248 (7%)
 Strand=Plus/Plus

Query  36   aaaactaccaaaaaaaaaaacagaaa-aaaa-CCTTTCAGGTCTCAACTAGCAATGGAGA  93
            |||||||  || ||||| || | ||| |||| ||||||||||||| |  | |||||||||
Sbjct  11   AAAACTA--AATAAAAAGAAGA-AAAGAAAAGCCTTTCAGGTCTC-A--A-CAATGGAGA  63

Query  94   TGAAGAAGATTGCCTGCGGAGTCG-TTTTCGCTGCTGCTTCCATGACCGCCGTCATGGCT  152
            ||||||||||||| ||||| || | ||||||||||||| |||||||||||||||||||||
Sbjct  64   TGAAGAAGATTGCTTGCGGTGT-GCTTTTCGCTGCTGCCTCCATGACCGCCGTCATGGCT  122

Query  153  GC--A-GAGGTCGGAGCACCTGCACCAGGACCCGCCGCAAGTGGAGCCTCCGTAGCTGTT  209
            ||  | || |||||||| || |||||||||||||| |||   |  ||||| || || |||
Sbjct  123  GCTGACGAAGTCGGAGCTCCGGCACCAGGACCCGCTGCATCCGCCGCCTCGGTTGC-GTT  181

Query  210  -CCGGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCTCTCTTC-GCCTACTACTTGA  267
             || || |||||||||||||||||||||||||||||||| |||||| || ||||||||| 
Sbjct  182  GCCAGCCCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCCCTCTTCAGC-TACTACTTGC  240

Query  268  ACTAAGCT  275
            ||||||||
Sbjct  241  ACTAAGCT  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16750303571


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5