BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41910.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345991 jgi|Araly1|345991|fgenesh1_pg.C_scaffold_4002333 1498 0.0
Ahg483276 jgi|Araly1|483276|fgenesh2_kg.4__2336__AT2G41920.1 699 0.0
Ahg481540 jgi|Araly1|481540|fgenesh2_kg.4__600__AT2G41920.1 643 0.0
Ahg489577 jgi|Araly1|489577|fgenesh2_kg.6__2711__AT5G27510.1 56.5 4e-07
> Ahg345991 jgi|Araly1|345991|fgenesh1_pg.C_scaffold_4002333
Length=1152
Score = 1498 bits (811), Expect = 0.0
Identities = 998/1088 (92%), Gaps = 13/1088 (1%)
Strand=Plus/Plus
Query 1 ATGGTGCCACCAGAGCTAGAATTCAACAAGTATCTCGGAAAGGGTTCATACGGTTCGGTG 60
||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1 ATGGTACCACCAGAGCTAGAATTCAAAAAGTATCTCGGAAAGGGTTCCTATGGTTCGGTG 60
Query 61 AGTCTTTTCAAGTATTCGAAACCACGCACGACTCTCTACACCGCGGTGATGACTTGCAAC 120
||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 61 AGTCTCTTCAAGTATTCGAAACCACACACGACTCTCTACACCGCGGTGAAGACTTGCAAC 120
Query 121 TATAAAAACGCTGAGTCTCTCGAGAAAGAGTTTGGAATCTTGTCTGAATTCAAGGGTTGT 180
||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 121 TATAAAAACGCCGAGTCTCTCCAGAAAGAGTTTGAAATCTTGTCCCAATTCAAGGGTTGT 180
Query 181 TCGAGAATTGTCCAGTGCTATGAAAACAGAGTTATAGAGAATCTGGACGTTGAGGGTAAC 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCGAGAATCGTCCAGTGCTATGAAAACAGAGTTATAGAGAATCTGGACGTTGAGGGTAAC 240
Query 241 AAAGAGTATATGATGCTAATGGAGTACGCAGCTGGAGGAAGCTTGAGGACTTTCATGAAA 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 CTAGAGTATATGATGCTTATGGAGTACGCAGCTGGAGGAAGCTTGAGGACTTTCATGGAA 300
Query 301 CGTTCCGAAGACAAGAAATTGCCTGATCCTTTGATAAGAGAGTTTACTCGAATGATCCTC 360
|| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 301 CGATCCGAAGATAAGAAACTGCCTGATCCTTTGATAAGAGAGTTTACTCGTATGATTCTC 360
Query 361 GAAGGCTTAGCCACAATTCACGGACAGGGCTATGTCCACTGCGATCTCAAACCC-GATAA 419
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 361 GAAGGCTTAGCCACGATTCACGGACAAGGCTATGTCCACTGCGATCTCAAACCCGGA-AA 419
Query 420 CATCCTCGTTTTCCC-AAGATGTGTCTACAAGAAGAGAGCATGGAGATCGTCTTACGAAT 478
|||||| |||||||| || ||| ||||| |||||| | || |||||||||||||| ||||
Sbjct 420 CATCCTTGTTTTCCCTAA-ATGCGTCTATAAGAAGGGCGCCTGGAGATCGTCTTATGAAT 478
Query 479 TGAAGATTTCTGATTTTGGATTGTCGAAAAGAGATGGAGACAGTAAGTGGTGGCATCCTC 538
||||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||||
Sbjct 479 TGAAGATTTCTGATTTTGGGTTGACCAAAAGAGATGGAGACAATAAGTGGTGGCATCCTC 538
Query 539 ATCGTCCGTTTGTGGGAACTGCGATCTACATGTCGCCGGGATCGGTTTCTCACGGCGAGA 598
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 539 ATCGCCCGTTCGTGGGAACTGCGATCTATATGTCGCCGGGATCGGTTTCTCATGGCGAGA 598
Query 599 CAGGGAGAGGACTTGATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACACTGGAA 658
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 CAGGGAGAGGACTTGATTTATGGTCATTGGGATGTGTGGTGTTGGAGATGTACACTGGAA 658
Query 659 AGAAACCATGGTGGCATAATAACTATGACTTGAAG-GATCTCAAGAACTGGTACGCGCCA 717
|||||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||
Sbjct 659 AGAAACCATGGTGGCATAATAACTATGACTTGGAGAG-TCTCAAGAAGTGGTACGCGCCA 717
Query 718 ATGATTCCGAGTGATCTTCCTTGCGATGCAAAACACTTTATTATGGCTTGCTTTGCGTTA 777
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 718 CTGATTCCGAGTGATCTTCCTTGCGATGCTAAACACTTTATCATGGCTTGCTTCACGTTA 777
Query 778 AATACAAACGAGAGAAGAGACGCATTGACATTGTTGGAGCATAGCTTCTTGCGTGGGGTG 837
||||| | ||||||| |||||| ||||||||||||||| |||||||||||||||| | |
Sbjct 778 AATACTCATGAGAGAAAAGACGCGTTGACATTGTTGGAGTATAGCTTCTTGCGTGGAGAG 837
Query 838 GTTAATAAGATCACAAAGCCTCATGTGAAGAATGAGAATCCGAAAGAAATTGCACTGGCA 897
||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||| ||
Sbjct 838 GTTAATAAGATCACAAAGCCTCATGTGAAGAATGAGAATAGGAAGGAAATTTCTCTGACA 897
Query 898 TTGGGGAGAGTTGTGAGGAGACCATCAAAAGTTCTTACGTC-CATTTTCAAAAGAGCCGG 956
||| ||| |||| ||| ||| |||||||||||| ||||| | ||||||||||||| ||
Sbjct 898 TTGAGGAAAGTTCTGAAGAGGCCATCAAAAGTT---ACGTCTC-TTTTCAAAAGAGCGGG 953
Query 957 AGAGTTGATGAAGATCATCAAGAAGCAGCCAAGAGCACCGAGATCCAATTTGCTTCCTGT 1016
||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 954 AGAATTGATGAAGATAATCAAGAAGCAGCCAAGACCACCGAGAGCCAATTTGCTTCCTGT 1013
Query 1017 TCACATTTGT-CACTTAGCACAACCATCTCAAAAGATTTGTTTTTTCATTTATTGTTCTC 1075
| || ||||| | || |||| ||||||||||||||||||| |||||||||||| ||||||
Sbjct 1014 TTACCTTTGTTCCCT-AGCAGAACCATCTCAAAAGATTTGGTTTTTCATTTATAGTTCTC 1072
Query 1076 TTTGTGTT 1083
||||||||
Sbjct 1073 TTTGTGTT 1080
> Ahg483276 jgi|Araly1|483276|fgenesh2_kg.4__2336__AT2G41920.1
Length=1030
Score = 699 bits (378), Expect = 0.0
Identities = 698/850 (82%), Gaps = 32/850 (4%)
Strand=Plus/Plus
Query 30 GTATCTCGGAAAGGGTTCATACGGTTCGGTGAGTCTTTTCAAGT--ATTCGA-AAC-C-A 84
|||||| ||||| ||||| | |||||||||||||||||||||| | || || | |
Sbjct 70 GTATCTGGGAAAAGGTTCGTTTGGTTCGGTGAGTCTTTTCAAGTACAAAGGACGACGCGA 129
Query 85 C-GC-ACGACTCTCTACACCGCGGTGATGA-CT-TGCAACTATAAAAACGCTGAGTCTCT 140
| || | |||||||||| |||| |||| | || || || | ||||||||| |||||||
Sbjct 130 CGGCGA-GACTCTCTACGCCGCCGTGAAAACCTCTG--ACGACAAAAACGCTAAGTCTCT 186
Query 141 CGAGAAAGAGTTTGGA-ATCTTGTCTGAATTCAAGGGTTGTTCGAGAATTGTCCAGTGCT 199
| | ||||||||| | ||| |||||||||||||||| ||||||||||| ||||| ||||
Sbjct 187 CCACAAAGAGTTT-CAGATCCTGTCTGAATTCAAGGGCTGTTCGAGAATCGTCCAATGCT 245
Query 200 ATGAAAACAGAGTTATAGAGA-ATCTGGACGTTGAGGGTAACAAAGAGTATATGA-TGCT 257
| | || |||| | ||||| || | || ||||| || |||||| | || |||
Sbjct 246 ACGGTAATGGAGTAAAAGAGAGAT-TTAACAACAAGGGTTACGTAGAGTACAAGATTGC- 303
Query 258 AATGGAGTACGCAGCTGGAGGAAGCTTGAGGACTTTCATGAAACG-TTCCGAAGACAAGA 316
||||||||||||||||||||||||||||| | ||||||| | || ||| |||||| ||
Sbjct 304 CATGGAGTACGCAGCTGGAGGAAGCTTGAGCAATTTCATGGACCGATTCA-AAGACAGGA 362
Query 317 AATTGCCTGATCCTTTGATAAGAGAGTTTACTCGAATGATCCTCGAAGGCTTAGCCACAA 376
||||||||||||| |||| ||||| |||||||| ||| | ||||| || || |||||||
Sbjct 363 AATTGCCTGATCCGATGATCAGAGACTTTACTCGTATGCTTCTCGAGGGTTTGGCCACAA 422
Query 377 TTCACGGACAGGGCTATGTCCACTGCGATCTCAAACCCGATAACATCCTCGTTTTCCCAA 436
||||| ||| |||||||| ||||||||||||||||| || || ||||| |||||||| |
Sbjct 423 TTCACAAACACGGCTATGTTCACTGCGATCTCAAACCTGAAAATATCCTTGTTTTCCCTA 482
Query 437 GATGTGTCTACAAGAA-GAGAGCATGGAGATCGTCTTACGAATTGAAGATTTCTGATTTT 495
| | |||||||||||| | | || |||||||||||||||||||||||| ||||||||||
Sbjct 483 GTTCTGTCTACAAGAACG-GCGCGTGGAGATCGTCTTACGAATTGAAGTTTTCTGATTTC 541
Query 496 GGATTGTCGAAAAGAGATGGAGACAGTAAGTGGTGGCATCCTCATCGTCCGTTTGTGGGA 555
|| |||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||
Sbjct 542 GGGTTGTCGAAAAGAGATGGAGACACTAAGTGGTGGCATCCTCGTCAACCGTTTGCGGGA 601
Query 556 ACTGCGATCTACATGTCGCCGG-GATCGGTTTCTCACGGCGAGACAGGGAGAGGACTTGA 614
|| ||||||| |||||||||| | ||| | |||||||| |||| ||||| |||||||||
Sbjct 602 ACACCGATCTATATGTCGCCGGAG-TCGATCTCTCACGGTGAGATAGGGAAAGGACTTGA 660
Query 615 TTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACACTGGAAAGAAACCATGGTGGCA 674
||||||||| || |||||||| || |||||||||||||||||||||| ||||||||||||
Sbjct 661 TTTATGGTCGTTGGGATGTGTCGTATTGGAGATGTACACTGGAAAGAGACCATGGTGGCA 720
Query 675 TAATAACTATGACTT-GAAGGATCTCAAGAACTGGTACGCGCCAATGATTCCGAGTGATC 733
||||||||||||||| |||| |||||| ||| || |||| |||| || |||| ||||||
Sbjct 721 TAATAACTATGACTTAGAAG-ATCTCATGAAGTGTTACGAGCCATTGTTTCCCCGTGATC 779
Query 734 TTCCTTGCGATGCAAAACACTTTATTATGGCTTGCTTTGCG-TTAAATACAAACGAGAGA 792
|| ||||||||||||||| |||| | ||| | ||||||||| || | | | ||||||
Sbjct 780 TTTCTTGCGATGCAAAACTCTTTCTCATGACCTGCTTTGCGGTTGAGC-CTGATGAGAGA 838
Query 793 AGAGACGCATTGACATTGTTGGAG-CATAGCTTCTTGCGTGGGG-TGGTTAATAAGATCA 850
| ||||||||||||||||||| || || |||||||||||||| | || |||||| |||
Sbjct 839 AAAGACGCATTGACATTGTTG-AGGCAAAGCTTCTTGCGTGGAGATGAC-AATAAGTTCA 896
Query 851 CAAAGCCTCA 860
||||| |||
Sbjct 897 AAAAGCTTCA 906
> Ahg481540 jgi|Araly1|481540|fgenesh2_kg.4__600__AT2G41920.1
Length=1045
Score = 643 bits (348), Expect = 0.0
Identities = 688/850 (81%), Gaps = 32/850 (4%)
Strand=Plus/Plus
Query 30 GTATCTCGGAA-AGGGTTCATACGGTTCGGTGAGTCTTTTCAAGT--ATTCGA-AAC-C- 83
|||||| |||| | ||||| | |||||||| ||||| ||||||| | || || |
Sbjct 70 GTATCTGGGAACA-GGTTCGTTTGGTTCGGTTAGTCTCTTCAAGTACAAAAGACGACGCG 128
Query 84 AC-GC-ACGACTCTCTACACCGCGGTGATGA-CT-TGCAACTATAAAAACGCTGAGTCTC 139
|| || | |||||||||| |||| |||| | || || ||| ||| ||||| ||||||
Sbjct 129 ACGGCGA-GACTCTCTACGCCGCCGTGAAAACCTCTG--GCTACAAACACGCTAAGTCTC 185
Query 140 TCGAGAAAGAGTTTGGA-ATCTTGTCTGAATTCAAGGGTTGTTCGAGAATTGTCCAGTGC 198
|| | ||||||||| | ||| |||||||||||||||| ||||||||||| ||||| |||
Sbjct 186 TCTACAAAGAGTTT-CAGATCCTGTCTGAATTCAAGGGCTGTTCGAGAATCGTCCAATGC 244
Query 199 TATGAAAACAGAGTTATAGAGA-ATCTGGACGTTGAGGGTAACAAAGAGTATATGA-TGC 256
|| | ||| |||| | | ||| || | ||| ||||| || |||||| | || |||
Sbjct 245 TACGGTAACGGAGTAAAACAGAGAT-TTAACGACAAGGGTTACGTAGAGTACAAGATTGC 303
Query 257 TAATGGAGTACGCAGCTGGAGGAAGCTTGAGGACTTTCATGAAACG-TTCCGAAGACAAG 315
||||||||||||||||||||||||||||| | |||| || | || ||| |||||| |
Sbjct 304 -CATGGAGTACGCAGCTGGAGGAAGCTTGAGCAATTTCGTGGACCGATTCA-AAGACAGG 361
Query 316 AAATTGCCTGATCCTTTGATAAGAGAGTTTACTCGAATGATCCTCGAAGGCTTAGCCACA 375
|||||||||||| | |||| ||||| |||||||| ||| | || || || ||||||||
Sbjct 362 AAATTGCCTGATTCGATGATCAGAGAATTTACTCGTATGCTTCTTGAGGGTTTAGCCACG 421
Query 376 ATTCACGGACAGGGCTATGTCCACTGCGATCTCAAACCCGATAACATCCTCGTTTTCCCA 435
||||||| ||| |||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 422 ATTCACGAACACGGCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTTGTTTTCCCT 481
Query 436 AGATGTGTCTACAAGAA-GAGAGCATGGAGATCGTCTTACGAATTGAAGATTTCTGATTT 494
|| | ||||||||| || | | || |||||||| |||||| ||||||||||||| |||||
Sbjct 482 AGTTCTGTCTACAAAAACG-GCGCGTGGAGATCATCTTACCAATTGAAGATTTCAGATTT 540
Query 495 TGGATTGTCGAAAAGAGATGGAGACAGTAAGTGGTGGCATCCTCATCGTCCGTTTGTGGG 554
|| |||||||||||||||||||||| ||||||||||||||||| || ||||||| |||
Sbjct 541 CGGGTTGTCGAAAAGAGATGGAGACACTAAGTGGTGGCATCCTCGTCAACCGTTTGCGGG 600
Query 555 AACTGCGATCTACATGTCGCCGG-GATCGGTTTCTCACGGCGAGACAGGGAGAGGACTTG 613
||| | ||||| |||||||||| | ||| | |||||||| |||| ||||| ||||||||
Sbjct 601 AACACCAATCTATATGTCGCCGGAG-TCGATCTCTCACGGTGAGATAGGGAAAGGACTTG 659
Query 614 ATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACACTGGAAAGAAACCATGGTGGC 673
|||||||||| || |||||||| || ||||||||||| |||||||||| |||||||||||
Sbjct 660 ATTTATGGTCGTTGGGATGTGTCGTATTGGAGATGTATACTGGAAAGAGACCATGGTGGC 719
Query 674 ATAATAACTATGACTT-GAAGGATCTCAAGAACTGGTACGCGCCAATGATTCCGAGTGAT 732
||| ||||||||| || |||| |||||| ||| || |||| |||| || ||||| || ||
Sbjct 720 ATACTAACTATGAATTAGAAG-ATCTCATGAAGTGTTACGAGCCATTGTTTCCGCGTAAT 778
Query 733 CTTCCTTGCGATGCAAAACACTTTATTATGGCTTGCTTTGCGTTAAATACAAACGAGAGA 792
||||||||||||||||||| |||| | ||| | |||||||| || | || | ||||||
Sbjct 779 CTTCCTTGCGATGCAAAACTCTTTCTCATGACCTGCTTTGCTTTTGAGCCACATGAGAGA 838
Query 793 AGAGACGCATTGACATTGTTGGAG-CATAGCTTCTTGCGTGGGG-TGGTTAATAAGATCA 850
| |||||| |||||||||||| || || |||||||| | ||| | || |||||| |||
Sbjct 839 AAAGACGCGTTGACATTGTTG-AGGCAAAGCTTCTTCCATGGAGATGCC-AATAAGTTCA 896
Query 851 CAAAGCCTCA 860
|||||| |||
Sbjct 897 CAAAGCTTCA 906
> Ahg489577 jgi|Araly1|489577|fgenesh2_kg.6__2711__AT5G27510.1
Length=906
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 469 TCTTACGAATTGAAGATTTCTGATTTTGGA 498
||||||||||||||||||||||||||||||
Sbjct 439 TCTTACGAATTGAAGATTTCTGATTTTGGA 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5