BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41920.1 Length=1049 Score E Sequences producing significant alignments: (Bits) Value Ahg481540 jgi|Araly1|481540|fgenesh2_kg.4__600__AT2G41920.1 1424 0.0 Ahg483276 jgi|Araly1|483276|fgenesh2_kg.4__2336__AT2G41920.1 1386 0.0 Ahg345991 jgi|Araly1|345991|fgenesh1_pg.C_scaffold_4002333 606 8e-173 Ahg480128 jgi|Araly1|480128|fgenesh2_kg.3__2829__AT2G05060.1 322 3e-87 > Ahg481540 jgi|Araly1|481540|fgenesh2_kg.4__600__AT2G41920.1 Length=1045 Score = 1424 bits (771), Expect = 0.0 Identities = 966/1058 (91%), Gaps = 22/1058 (2%) Strand=Plus/Plus Query 1 GTTGCCAAATCTATCAGAAGAATTCAATCGTTGTTCTATTTGCAATGGTGGCGTTAGATT 60 ||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||| Sbjct 1 GTTGCCAAAGCTATCAGAAGAA-TCAATC---GTTCTATTTGCAATGGTGGCGTTGGATT 56 Query 61 TGGAGTTCGAAAGGTATCCGGGGGAAC--GTTCGTTTGGTTCGGTGAGTCTCTTCAAGTA 118 ||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||| Sbjct 57 TGGAGTTCGAAAGGTAT-C-TGGGAACAGGTTCGTTTGGTTCGGTTAGTCTCTTCAAGTA 114 Query 119 CAAAAGACAACGCGACGGCGAGACTCAATACGCCGCCGTGAAAACATCTAGCGACGAAA- 177 |||||||| ||||||||||||||||| ||||||||||||||||| ||| || || ||| Sbjct 115 CAAAAGACGACGCGACGGCGAGACTCTCTACGCCGCCGTGAAAACCTCTGGCTAC-AAAC 173 Query 178 ATGCTAAGTCTCTCTACAAAGAGTTTCAGATCCTCTCTCAATTCAAGGGTTGTTCGAGAA 237 | |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| Sbjct 174 ACGCTAAGTCTCTCTACAAAGAGTTTCAGATCCTGTCTGAATTCAAGGGCTGTTCGAGAA 233 Query 238 TCGTCCAATGCTACGGGAATGGAGTAAAAGAGATATTTAACGACAAGGGTTACGTAGAAT 297 |||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||| | Sbjct 234 TCGTCCAATGCTACGGTAACGGAGTAAAACAGAGATTTAACGACAAGGGTTACGTAGAGT 293 Query 298 ACAAGATTGCCATGGAGTACGCATTTGGAGGAAGCTTGAGCGATTTCATGGACCGATTCA 357 ||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| Sbjct 294 ACAAGATTGCCATGGAGTACGCAGCTGGAGGAAGCTTGAGCAATTTCGTGGACCGATTCA 353 Query 358 AAGACAGAAAATTGTCTGATTCGATGATCAGAGAGTTTACTCGTATGCTTCTCGAGGGTT 417 ||||||| |||||| ||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 354 AAGACAGGAAATTGCCTGATTCGATGATCAGAGAATTTACTCGTATGCTTCTTGAGGGTT 413 Query 418 TAGCCACGATTCACAG-ACACGGCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTT 476 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 TAGCCACGATTCAC-GAACACGGCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTT 472 Query 477 GTTTTCCCTAGTTCTGTCTACAAGAACGGCGCGTGGA--TCAGATCCTACGAATTGAAGA 534 ||||||||||||||||||||||| ||||||||||||| ||| || ||| ||||||||| Sbjct 473 GTTTTCCCTAGTTCTGTCTACAAAAACGGCGCGTGGAGATCA--TCTTACCAATTGAAGA 530 Query 535 TTTCTGATTTCGGGATGTCGAAAAGAGATGGAGACACTCAGTGGTGGCAACCTCG-CAAA 593 |||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||| Sbjct 531 TTTCAGATTTCGGGTTGTCGAAAAGAGATGGAGACACTAAGTGGTGGCATCCTCGTCAA- 589 Query 594 CCATATGTGGGAACACCGATCTATATGTCGCCTGAGTCGATCTCTCACGGGGAGATAGGG 653 || | || ||||||||| |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 590 CCGTTTGCGGGAACACCAATCTATATGTCGCCGGAGTCGATCTCTCACGGTGAGATAGGG 649 Query 654 AAAGGACTTGATTTATGGTCGTTGGGATGTGTGGTGTTGGAGATGTACACTAGAAAGA-A 712 |||||||||||||||||||||||||||||||| || ||||||||||| ||| |||||| | Sbjct 650 AAAGGACTTGATTTATGGTCGTTGGGATGTGTCGTATTGGAGATGTATACTGGAAAGAGA 709 Query 713 GCCATGGTGGCATACTAACTATGAATTAGAAGAGCTCATGAAGTGTTATGAGCCGTTGTT 772 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct 710 -CCATGGTGGCATACTAACTATGAATTAGAAGATCTCATGAAGTGTTACGAGCCATTGTT 768 Query 773 TCCGCGTAATCTTCCTTGCGATGCAAAACTCTTTCTCATGACCTGCTTTGCGTCCGAACC 832 ||||||||||||||||||||||||||||||||||||||||||||||||||| | || || Sbjct 769 TCCGCGTAATCTTCCTTGCGATGCAAAACTCTTTCTCATGACCTGCTTTGCTTTTGAGCC 828 Query 833 AGATGAGAGGAAAGATGCGTTGACATTGTTGAGGCAAAGCTTCTTGCATGGAGATGTCAA 892 | ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 829 ACATGAGAGAAAAGACGCGTTGACATTGTTGAGGCAAAGCTTCTTCCATGGAGATGCCAA 888 Query 893 TAAGTTCACAAACCGTCAGATGAATGTGAAGATTGACAGTGCGGATGATTTTACCCTGCA 952 |||||||||||| | ||||||||||| ||||||||||| | |||||||||| ||| |||| Sbjct 889 TAAGTTCACAAAGCTTCAGATGAATGCGAAGATTGACAATCCGGATGATTTCACCTTGCA 948 Query 953 ACTGGAGAAAGTTAGCCA-GATGCTTTCGGAAATTAGGACTATGTGTTAATTTGAAGTTG 1011 |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 949 ACTGGAGAAACTTAGC-ATGATGCTTTCGGAAATTAGGACTATGTGTTAATTTGAAGTTG 1007 Query 1012 ATGAGCTCTGCAGAGAGCCCTGGTCCACAGTAATATTG 1049 |||||| |||| |||||||||||| ||| | |||||| Sbjct 1008 TTGAGCTTTGCAAAGAGCCCTGGTCAACACTGATATTG 1045 > Ahg483276 jgi|Araly1|483276|fgenesh2_kg.4__2336__AT2G41920.1 Length=1030 Score = 1386 bits (750), Expect = 0.0 Identities = 947/1041 (91%), Gaps = 18/1041 (2%) Strand=Plus/Plus Query 1 GTTGCCAAATCTATCAGAAGAATTCAATCGTTGTTCTATTTGCAATGGTGGCGTTAGATT 60 ||||||||| |||||||||||| |||||| ||||||||||| ||||||||||| |||| Sbjct 1 GTTGCCAAAGCTATCAGAAGAA-TCAATC---GTTCTATTTGCGATGGTGGCGTTGGATT 56 Query 61 TGGAGTTCGAAAGGTATCCGGGGGAACGTTCGTTTGGTTCGGTGAGTCTCTTCAAGTACA 120 |||||| ||||||||||| ||| || |||||||||||||||||||||| |||||||||| Sbjct 57 TGGAGTACGAAAGGTATCTGGGAAAAGGTTCGTTTGGTTCGGTGAGTCTTTTCAAGTACA 116 Query 121 AAAGACAACGCGACGGCGAGACTCAATACGCCGCCGTGAAAACATCTAG-CGACGAAAAT 179 || ||| ||||||||||||||||| ||||||||||||||||| ||| | |||| |||| Sbjct 117 AAGGACGACGCGACGGCGAGACTCTCTACGCCGCCGTGAAAACCTCT-GACGACAAAAAC 175 Query 180 GCTAAGTCTCTCTACAAAGAGTTTCAGATCCTCTCTCAATTCAAGGGTTGTTCGAGAATC 239 |||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct 176 GCTAAGTCTCTCCACAAAGAGTTTCAGATCCTGTCTGAATTCAAGGGCTGTTCGAGAATC 235 Query 240 GTCCAATGCTACGGGAATGGAGTAAAAGAGATATTTAACGACAAGGGTTACGTAGAATAC 299 |||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||| Sbjct 236 GTCCAATGCTACGGTAATGGAGTAAAAGAGAGATTTAACAACAAGGGTTACGTAGAGTAC 295 Query 300 AAGATTGCCATGGAGTACGCATTTGGAGGAAGCTTGAGCGATTTCATGGACCGATTCAAA 359 ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 296 AAGATTGCCATGGAGTACGCAGCTGGAGGAAGCTTGAGCAATTTCATGGACCGATTCAAA 355 Query 360 GACAGAAAATTGTCTGATTCGATGATCAGAGAGTTTACTCGTATGCTTCTCGAGGGTTTA 419 ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 356 GACAGGAAATTGCCTGATCCGATGATCAGAGACTTTACTCGTATGCTTCTCGAGGGTTTG 415 Query 420 GCCACGATTCACAGACACGGCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTTGTT 479 ||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 416 GCCACAATTCACAAACACGGCTATGTTCACTGCGATCTCAAACCTGAAAATATCCTTGTT 475 Query 480 TTCCCTAGTTCTGTCTACAAGAACGGCGCGTGGA--TCAGATCCTACGAATTGAAGATTT 537 |||||||||||||||||||||||||||||||||| || | || |||||||||||| ||| Sbjct 476 TTCCCTAGTTCTGTCTACAAGAACGGCGCGTGGAGATC-G-TCTTACGAATTGAAGTTTT 533 Query 538 CTGATTTCGGGATGTCGAAAAGAGATGGAGACACTCAGTGGTGGCAACCTCG-CAAACCA 596 ||||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||| || Sbjct 534 CTGATTTCGGGTTGTCGAAAAGAGATGGAGACACTAAGTGGTGGCATCCTCGTCAA-CCG 592 Query 597 TATGTGGGAACACCGATCTATATGTCGCCTGAGTCGATCTCTCACGGGGAGATAGGGAAA 656 | || |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 593 TTTGCGGGAACACCGATCTATATGTCGCCGGAGTCGATCTCTCACGGTGAGATAGGGAAA 652 Query 657 GGACTTGATTTATGGTCGTTGGGATGTGTGGTGTTGGAGATGTACACTAGAAAGA-AGCC 715 ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| | || Sbjct 653 GGACTTGATTTATGGTCGTTGGGATGTGTCGTATTGGAGATGTACACTGGAAAGAGA-CC 711 Query 716 ATGGTGGCATACTAACTATGAATTAGAAGAGCTCATGAAGTGTTATGAGCCGTTGTTTCC 775 ||||||||||| ||||||||| |||||||| |||||||||||||| ||||| |||||||| Sbjct 712 ATGGTGGCATAATAACTATGACTTAGAAGATCTCATGAAGTGTTACGAGCCATTGTTTCC 771 Query 776 GCGTAATCTTCCTTGCGATGCAAAACTCTTTCTCATGACCTGCTTTGCG-TCCGAACCAG 834 ||| ||||| |||||||||||||||||||||||||||||||||||||| | || || | Sbjct 772 CCGTGATCTTTCTTGCGATGCAAAACTCTTTCTCATGACCTGCTTTGCGGTT-GAGCCTG 830 Query 835 ATGAGAGGAAAGATGCGTTGACATTGTTGAGGCAAAGCTTCTTGCATGGAGATGTCAATA 894 ||||||| ||||| || |||||||||||||||||||||||||||| |||||||| ||||| Sbjct 831 ATGAGAGAAAAGACGCATTGACATTGTTGAGGCAAAGCTTCTTGCGTGGAGATGACAATA 890 Query 895 AGTTCACAAACCGTCAGATGAATGTGAAGATTGACAGTGCGGATGATTTTACCCTGCAAC 954 |||||| ||| | ||||||||||||||||||||| | | |||||||||| |||||||||| Sbjct 891 AGTTCAAAAAGCTTCAGATGAATGTGAAGATTGAAAATCCGGATGATTTCACCCTGCAAC 950 Query 955 TGGAGAAA-GTTAGCCAGATGCTTTCGGAAATTAGGACTATGTGTTAATTTGAAGTTGAT 1013 |||||||| || || |||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 951 TGGAGAAATGT-AGACAGATGCTTTCGGAAATTAGGAGTATGTGTTGATTTGAAGTTGAT 1009 Query 1014 GAGCTCTGCAGAGAGCCCTGG 1034 |||||||||| |||||||||| Sbjct 1010 GAGCTCTGCAAAGAGCCCTGG 1030 > Ahg345991 jgi|Araly1|345991|fgenesh1_pg.C_scaffold_4002333 Length=1152 Score = 606 bits (328), Expect = 8e-173 Identities = 671/833 (81%), Gaps = 38/833 (5%) Strand=Plus/Plus Query 88 GTTCGTTTGGTTCGGTGAGTCTCTTCAAGTACAAAAGACAACGCGACGGCGA-GACTCAA 146 |||| | ||||||||||||||||||||||| | || ||| | || | | ||||| Sbjct 44 GTTCCTATGGTTCGGTGAGTCTCTTCAAGT--ATTCGA-AAC-C-AC-AC-ACGACTCTC 96 Query 147 TACGCCGCCGTGAAAACAT-CTAGCGACGAAAATGCTAAGTCTCTCTACAAAGAGTTTCA 205 ||| |||| ||||| || | | | | | |||| || |||||||| | ||||||||| | Sbjct 97 TACACCGCGGTGAAGACTTGC-AACTATAAAAACGCCGAGTCTCTCCAGAAAGAGTTTGA 155 Query 206 GATCCTCTCTCAATTCAAGGGTTGTTCGAGAATCGTCCAATGCTACGGGAATGGAGTAAA 265 ||| | || ||||||||||||||||||||||||||||| ||||| | || |||| | Sbjct 156 AATCTTGTCCCAATTCAAGGGTTGTTCGAGAATCGTCCAGTGCTATGAAAACAGAGTTAT 215 Query 266 AGAGATAT-TTAACGACAAGGGTTACGTAGAATACAAGATTGC-CATGGAGTACGCATTT 323 ||||| || | ||| ||||| || |||| || | || ||| |||||||||||| | Sbjct 216 AGAGA-ATCTGGACGTTGAGGGTAACCTAGAGTATATGA-TGCTTATGGAGTACGCAGCT 273 Query 324 GGAGGAAGCTTGAGCGA-TTTCATGGACCGATTCAAAGA-CAGAAAATTGTCTGATTCGA 381 |||||||||||||| || ||||||||| |||| | |||| || ||| || ||||| | Sbjct 274 GGAGGAAGCTTGAG-GACTTTCATGGAACGATCCGAAGATAAG-AAACTGCCTGATCCTT 331 Query 382 TGATCAGAGAGTTTACTCGTATGCTTCTCGAGGGTTTAGCCACGATTCACAGACACGGCT 441 |||| |||||||||||||||||| ||||||| || ||||||||||||||| |||| |||| Sbjct 332 TGATAAGAGAGTTTACTCGTATGATTCTCGAAGGCTTAGCCACGATTCACGGACAAGGCT 391 Query 442 ATGTTCACTGCGATCTCAAACCCGAAAACATCCTTGTTTTCCCT-AGTTCTGTCTACAAG 500 |||| ||||||||||||||||||| ||||||||||||||||||| | | | ||||| ||| Sbjct 392 ATGTCCACTGCGATCTCAAACCCGGAAACATCCTTGTTTTCCCTAAATGC-GTCTATAAG 450 Query 501 AACGGCGCGT-G-GATCAGATCCTACGAATTGAAGATTTCTGATTTCGGGATGTCGAAAA 558 || ||||| | | |||| | || || |||||||||||||||||||| ||| || | |||| Sbjct 451 AAGGGCGCCTGGAGATC-G-TCTTATGAATTGAAGATTTCTGATTTTGGGTTGACCAAAA 508 Query 559 GAGATGGAGACACTCAGTGGTGGCAACCTC-GCAAACCATAT-GTGGGAACACCGATCTA 616 |||||||||||| | |||||||||| |||| | || | | |||||||| ||||||| Sbjct 509 GAGATGGAGACAATAAGTGGTGGCATCCTCATC-GCCCGT-TCGTGGGAACTGCGATCTA 566 Query 617 TATGTCGCCTGAG-TCGATCTCTCACGGGGAGATAGGGAAAGGACTTGATTTATGGTCGT 675 ||||||||| | | ||| | ||||| || |||| ||||| |||||||||||||||||| | Sbjct 567 TATGTCGCC-GGGATCGGTTTCTCATGGCGAGACAGGGAGAGGACTTGATTTATGGTCAT 625 Query 676 TGGGATGTGTGGTGTTGGAGATGTACACTAGAAAGAAGCCATGGTGGCATACTAACTATG 735 ||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| Sbjct 626 TGGGATGTGTGGTGTTGGAGATGTACACTGGAAAGAAACCATGGTGGCATAATAACTATG 685 Query 736 AATTAGAAGAG-CTCATGAAGTGTTATGAGCCGTTGTTTCCGCGTAATCTTCCTTGCGAT 794 | || || ||| |||| |||||| || | ||| || ||||| || |||||||||||||| Sbjct 686 ACTTGGA-GAGTCTCAAGAAGTGGTACGCGCCACTGATTCCGAGTGATCTTCCTTGCGAT 744 Query 795 GCAAAACTCTTTCTCATGACCTGCTTTGCGTCCGA-AC-CAGATGAGAGGAAAGATGCGT 852 || |||| |||| ||||| | ||||| ||| | || || |||||| ||||| |||| Sbjct 745 GCTAAACACTTTATCATGGCTTGCTTCACGTTAAATACTCA--TGAGAGAAAAGACGCGT 802 Query 853 TGACATTGTTG-AGGCAAAGCTTCTTGCATGGAGATGTCAATAAGTTCACAAA 904 ||||||||||| || | |||||||||| |||||| || |||||| ||||||| Sbjct 803 TGACATTGTTGGAGT-ATAGCTTCTTGCGTGGAGAGGTTAATAAGATCACAAA 854 > Ahg480128 jgi|Araly1|480128|fgenesh2_kg.3__2829__AT2G05060.1 Length=924 Score = 322 bits (174), Expect = 3e-87 Identities = 335/411 (82%), Gaps = 18/411 (4%) Strand=Plus/Plus Query 88 GTTCGTTTGGTTCGGTGAGTCTCTTCAAGTACAAAAGACAACGCGACGGCGAGACTCAAT 147 |||||| ||||||||||||||| |||||||||| ||| ||||||||||| || | | Sbjct 68 GTTCGTCCGGTTCGGTGAGTCTCATCAAGTACAATGGACGCCGCGACGGCGAAACGCTTT 127 Query 148 ACGCCGCCGTGAAAACATCTAGCGA-CGA-AAATGCTAAGTCTCTCTACAAAGAGTTTCA 205 |||||||||||||||| || | | | | | | ||| | ||||||||||||||||||| Sbjct 128 ACGCCGCCGTGAAAACCTCCAAC-ATC-ATTCACGCTGACACTCTCTACAAAGAGTTTCA 185 Query 206 GATCCTCTCTC-AATTCAAGGGTTGTTCGAGAATCGTCCAATGCTACGGGAATGGAGTAA 264 |||| | || | ||||||| || ||||| ||||||||||||||||| |||| |||| Sbjct 186 GATCTTGTC-CGAATTCAAAGGATGTTCAAGAATCGTCCAATGCTATGGGACCAAAGTAG 244 Query 265 AAGAGATATTTAACGACAAGGGTTACGTAGAATACAAGATTGC-CATGGAGTACGCATTT 323 |||||| | | | |||| | ||| ||||||| | ||||||| | |||||||||||||| | Sbjct 245 AAGAGAGAATCACCGACGACGGTGACGTAGAGTTCAAGATT-CACATGGAGTACGCATCT 303 Query 324 GGAGGAAGCTTGAGCGATTTCATGGA-CCGATTCAAAGACA-GAAAATTGTCTGATTCGA 381 |||||||||||||| |||| || || | ||||||| || | | |||||| ||||| | Sbjct 304 GGAGGAAGCTTGAGAAATTTTAT-GAGCAGATTCAAGGAAATG-AAATTGCCTGATCCTT 361 Query 382 TGATCAG-AGAGTTTACTCGTATGCTTCTCGAGGGTTTAGCCACG--ATTCACAGACACG 438 ||||||| || |||||| |||||| |||| |||||||||| || | ||||| |||||| Sbjct 362 TGATCAGAAG-GTTTACGCGTATGATTCTTGAGGGTTTAG-CA-GTTATTCATGGACACG 418 Query 439 GCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTTGTTTTCCCTAGTT 489 ||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 419 GCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTCGTTTTCCCGAGTT 469 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39037867008 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5