BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41920.1
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481540 jgi|Araly1|481540|fgenesh2_kg.4__600__AT2G41920.1 1424 0.0
Ahg483276 jgi|Araly1|483276|fgenesh2_kg.4__2336__AT2G41920.1 1386 0.0
Ahg345991 jgi|Araly1|345991|fgenesh1_pg.C_scaffold_4002333 606 8e-173
Ahg480128 jgi|Araly1|480128|fgenesh2_kg.3__2829__AT2G05060.1 322 3e-87
> Ahg481540 jgi|Araly1|481540|fgenesh2_kg.4__600__AT2G41920.1
Length=1045
Score = 1424 bits (771), Expect = 0.0
Identities = 966/1058 (91%), Gaps = 22/1058 (2%)
Strand=Plus/Plus
Query 1 GTTGCCAAATCTATCAGAAGAATTCAATCGTTGTTCTATTTGCAATGGTGGCGTTAGATT 60
||||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 1 GTTGCCAAAGCTATCAGAAGAA-TCAATC---GTTCTATTTGCAATGGTGGCGTTGGATT 56
Query 61 TGGAGTTCGAAAGGTATCCGGGGGAAC--GTTCGTTTGGTTCGGTGAGTCTCTTCAAGTA 118
||||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||
Sbjct 57 TGGAGTTCGAAAGGTAT-C-TGGGAACAGGTTCGTTTGGTTCGGTTAGTCTCTTCAAGTA 114
Query 119 CAAAAGACAACGCGACGGCGAGACTCAATACGCCGCCGTGAAAACATCTAGCGACGAAA- 177
|||||||| ||||||||||||||||| ||||||||||||||||| ||| || || |||
Sbjct 115 CAAAAGACGACGCGACGGCGAGACTCTCTACGCCGCCGTGAAAACCTCTGGCTAC-AAAC 173
Query 178 ATGCTAAGTCTCTCTACAAAGAGTTTCAGATCCTCTCTCAATTCAAGGGTTGTTCGAGAA 237
| |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 174 ACGCTAAGTCTCTCTACAAAGAGTTTCAGATCCTGTCTGAATTCAAGGGCTGTTCGAGAA 233
Query 238 TCGTCCAATGCTACGGGAATGGAGTAAAAGAGATATTTAACGACAAGGGTTACGTAGAAT 297
|||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||| |
Sbjct 234 TCGTCCAATGCTACGGTAACGGAGTAAAACAGAGATTTAACGACAAGGGTTACGTAGAGT 293
Query 298 ACAAGATTGCCATGGAGTACGCATTTGGAGGAAGCTTGAGCGATTTCATGGACCGATTCA 357
||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct 294 ACAAGATTGCCATGGAGTACGCAGCTGGAGGAAGCTTGAGCAATTTCGTGGACCGATTCA 353
Query 358 AAGACAGAAAATTGTCTGATTCGATGATCAGAGAGTTTACTCGTATGCTTCTCGAGGGTT 417
||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 354 AAGACAGGAAATTGCCTGATTCGATGATCAGAGAATTTACTCGTATGCTTCTTGAGGGTT 413
Query 418 TAGCCACGATTCACAG-ACACGGCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTT 476
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TAGCCACGATTCAC-GAACACGGCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTT 472
Query 477 GTTTTCCCTAGTTCTGTCTACAAGAACGGCGCGTGGA--TCAGATCCTACGAATTGAAGA 534
||||||||||||||||||||||| ||||||||||||| ||| || ||| |||||||||
Sbjct 473 GTTTTCCCTAGTTCTGTCTACAAAAACGGCGCGTGGAGATCA--TCTTACCAATTGAAGA 530
Query 535 TTTCTGATTTCGGGATGTCGAAAAGAGATGGAGACACTCAGTGGTGGCAACCTCG-CAAA 593
|||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct 531 TTTCAGATTTCGGGTTGTCGAAAAGAGATGGAGACACTAAGTGGTGGCATCCTCGTCAA- 589
Query 594 CCATATGTGGGAACACCGATCTATATGTCGCCTGAGTCGATCTCTCACGGGGAGATAGGG 653
|| | || ||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 590 CCGTTTGCGGGAACACCAATCTATATGTCGCCGGAGTCGATCTCTCACGGTGAGATAGGG 649
Query 654 AAAGGACTTGATTTATGGTCGTTGGGATGTGTGGTGTTGGAGATGTACACTAGAAAGA-A 712
|||||||||||||||||||||||||||||||| || ||||||||||| ||| |||||| |
Sbjct 650 AAAGGACTTGATTTATGGTCGTTGGGATGTGTCGTATTGGAGATGTATACTGGAAAGAGA 709
Query 713 GCCATGGTGGCATACTAACTATGAATTAGAAGAGCTCATGAAGTGTTATGAGCCGTTGTT 772
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 710 -CCATGGTGGCATACTAACTATGAATTAGAAGATCTCATGAAGTGTTACGAGCCATTGTT 768
Query 773 TCCGCGTAATCTTCCTTGCGATGCAAAACTCTTTCTCATGACCTGCTTTGCGTCCGAACC 832
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 769 TCCGCGTAATCTTCCTTGCGATGCAAAACTCTTTCTCATGACCTGCTTTGCTTTTGAGCC 828
Query 833 AGATGAGAGGAAAGATGCGTTGACATTGTTGAGGCAAAGCTTCTTGCATGGAGATGTCAA 892
| ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 829 ACATGAGAGAAAAGACGCGTTGACATTGTTGAGGCAAAGCTTCTTCCATGGAGATGCCAA 888
Query 893 TAAGTTCACAAACCGTCAGATGAATGTGAAGATTGACAGTGCGGATGATTTTACCCTGCA 952
|||||||||||| | ||||||||||| ||||||||||| | |||||||||| ||| ||||
Sbjct 889 TAAGTTCACAAAGCTTCAGATGAATGCGAAGATTGACAATCCGGATGATTTCACCTTGCA 948
Query 953 ACTGGAGAAAGTTAGCCA-GATGCTTTCGGAAATTAGGACTATGTGTTAATTTGAAGTTG 1011
|||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ACTGGAGAAACTTAGC-ATGATGCTTTCGGAAATTAGGACTATGTGTTAATTTGAAGTTG 1007
Query 1012 ATGAGCTCTGCAGAGAGCCCTGGTCCACAGTAATATTG 1049
|||||| |||| |||||||||||| ||| | ||||||
Sbjct 1008 TTGAGCTTTGCAAAGAGCCCTGGTCAACACTGATATTG 1045
> Ahg483276 jgi|Araly1|483276|fgenesh2_kg.4__2336__AT2G41920.1
Length=1030
Score = 1386 bits (750), Expect = 0.0
Identities = 947/1041 (91%), Gaps = 18/1041 (2%)
Strand=Plus/Plus
Query 1 GTTGCCAAATCTATCAGAAGAATTCAATCGTTGTTCTATTTGCAATGGTGGCGTTAGATT 60
||||||||| |||||||||||| |||||| ||||||||||| ||||||||||| ||||
Sbjct 1 GTTGCCAAAGCTATCAGAAGAA-TCAATC---GTTCTATTTGCGATGGTGGCGTTGGATT 56
Query 61 TGGAGTTCGAAAGGTATCCGGGGGAACGTTCGTTTGGTTCGGTGAGTCTCTTCAAGTACA 120
|||||| ||||||||||| ||| || |||||||||||||||||||||| ||||||||||
Sbjct 57 TGGAGTACGAAAGGTATCTGGGAAAAGGTTCGTTTGGTTCGGTGAGTCTTTTCAAGTACA 116
Query 121 AAAGACAACGCGACGGCGAGACTCAATACGCCGCCGTGAAAACATCTAG-CGACGAAAAT 179
|| ||| ||||||||||||||||| ||||||||||||||||| ||| | |||| ||||
Sbjct 117 AAGGACGACGCGACGGCGAGACTCTCTACGCCGCCGTGAAAACCTCT-GACGACAAAAAC 175
Query 180 GCTAAGTCTCTCTACAAAGAGTTTCAGATCCTCTCTCAATTCAAGGGTTGTTCGAGAATC 239
|||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 176 GCTAAGTCTCTCCACAAAGAGTTTCAGATCCTGTCTGAATTCAAGGGCTGTTCGAGAATC 235
Query 240 GTCCAATGCTACGGGAATGGAGTAAAAGAGATATTTAACGACAAGGGTTACGTAGAATAC 299
|||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||
Sbjct 236 GTCCAATGCTACGGTAATGGAGTAAAAGAGAGATTTAACAACAAGGGTTACGTAGAGTAC 295
Query 300 AAGATTGCCATGGAGTACGCATTTGGAGGAAGCTTGAGCGATTTCATGGACCGATTCAAA 359
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 296 AAGATTGCCATGGAGTACGCAGCTGGAGGAAGCTTGAGCAATTTCATGGACCGATTCAAA 355
Query 360 GACAGAAAATTGTCTGATTCGATGATCAGAGAGTTTACTCGTATGCTTCTCGAGGGTTTA 419
||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 356 GACAGGAAATTGCCTGATCCGATGATCAGAGACTTTACTCGTATGCTTCTCGAGGGTTTG 415
Query 420 GCCACGATTCACAGACACGGCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTTGTT 479
||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 416 GCCACAATTCACAAACACGGCTATGTTCACTGCGATCTCAAACCTGAAAATATCCTTGTT 475
Query 480 TTCCCTAGTTCTGTCTACAAGAACGGCGCGTGGA--TCAGATCCTACGAATTGAAGATTT 537
|||||||||||||||||||||||||||||||||| || | || |||||||||||| |||
Sbjct 476 TTCCCTAGTTCTGTCTACAAGAACGGCGCGTGGAGATC-G-TCTTACGAATTGAAGTTTT 533
Query 538 CTGATTTCGGGATGTCGAAAAGAGATGGAGACACTCAGTGGTGGCAACCTCG-CAAACCA 596
||||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||| ||
Sbjct 534 CTGATTTCGGGTTGTCGAAAAGAGATGGAGACACTAAGTGGTGGCATCCTCGTCAA-CCG 592
Query 597 TATGTGGGAACACCGATCTATATGTCGCCTGAGTCGATCTCTCACGGGGAGATAGGGAAA 656
| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 593 TTTGCGGGAACACCGATCTATATGTCGCCGGAGTCGATCTCTCACGGTGAGATAGGGAAA 652
Query 657 GGACTTGATTTATGGTCGTTGGGATGTGTGGTGTTGGAGATGTACACTAGAAAGA-AGCC 715
||||||||||||||||||||||||||||| || ||||||||||||||| |||||| | ||
Sbjct 653 GGACTTGATTTATGGTCGTTGGGATGTGTCGTATTGGAGATGTACACTGGAAAGAGA-CC 711
Query 716 ATGGTGGCATACTAACTATGAATTAGAAGAGCTCATGAAGTGTTATGAGCCGTTGTTTCC 775
||||||||||| ||||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 712 ATGGTGGCATAATAACTATGACTTAGAAGATCTCATGAAGTGTTACGAGCCATTGTTTCC 771
Query 776 GCGTAATCTTCCTTGCGATGCAAAACTCTTTCTCATGACCTGCTTTGCG-TCCGAACCAG 834
||| ||||| |||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 772 CCGTGATCTTTCTTGCGATGCAAAACTCTTTCTCATGACCTGCTTTGCGGTT-GAGCCTG 830
Query 835 ATGAGAGGAAAGATGCGTTGACATTGTTGAGGCAAAGCTTCTTGCATGGAGATGTCAATA 894
||||||| ||||| || |||||||||||||||||||||||||||| |||||||| |||||
Sbjct 831 ATGAGAGAAAAGACGCATTGACATTGTTGAGGCAAAGCTTCTTGCGTGGAGATGACAATA 890
Query 895 AGTTCACAAACCGTCAGATGAATGTGAAGATTGACAGTGCGGATGATTTTACCCTGCAAC 954
|||||| ||| | ||||||||||||||||||||| | | |||||||||| ||||||||||
Sbjct 891 AGTTCAAAAAGCTTCAGATGAATGTGAAGATTGAAAATCCGGATGATTTCACCCTGCAAC 950
Query 955 TGGAGAAA-GTTAGCCAGATGCTTTCGGAAATTAGGACTATGTGTTAATTTGAAGTTGAT 1013
|||||||| || || |||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 951 TGGAGAAATGT-AGACAGATGCTTTCGGAAATTAGGAGTATGTGTTGATTTGAAGTTGAT 1009
Query 1014 GAGCTCTGCAGAGAGCCCTGG 1034
|||||||||| ||||||||||
Sbjct 1010 GAGCTCTGCAAAGAGCCCTGG 1030
> Ahg345991 jgi|Araly1|345991|fgenesh1_pg.C_scaffold_4002333
Length=1152
Score = 606 bits (328), Expect = 8e-173
Identities = 671/833 (81%), Gaps = 38/833 (5%)
Strand=Plus/Plus
Query 88 GTTCGTTTGGTTCGGTGAGTCTCTTCAAGTACAAAAGACAACGCGACGGCGA-GACTCAA 146
|||| | ||||||||||||||||||||||| | || ||| | || | | |||||
Sbjct 44 GTTCCTATGGTTCGGTGAGTCTCTTCAAGT--ATTCGA-AAC-C-AC-AC-ACGACTCTC 96
Query 147 TACGCCGCCGTGAAAACAT-CTAGCGACGAAAATGCTAAGTCTCTCTACAAAGAGTTTCA 205
||| |||| ||||| || | | | | | |||| || |||||||| | ||||||||| |
Sbjct 97 TACACCGCGGTGAAGACTTGC-AACTATAAAAACGCCGAGTCTCTCCAGAAAGAGTTTGA 155
Query 206 GATCCTCTCTCAATTCAAGGGTTGTTCGAGAATCGTCCAATGCTACGGGAATGGAGTAAA 265
||| | || ||||||||||||||||||||||||||||| ||||| | || |||| |
Sbjct 156 AATCTTGTCCCAATTCAAGGGTTGTTCGAGAATCGTCCAGTGCTATGAAAACAGAGTTAT 215
Query 266 AGAGATAT-TTAACGACAAGGGTTACGTAGAATACAAGATTGC-CATGGAGTACGCATTT 323
||||| || | ||| ||||| || |||| || | || ||| |||||||||||| |
Sbjct 216 AGAGA-ATCTGGACGTTGAGGGTAACCTAGAGTATATGA-TGCTTATGGAGTACGCAGCT 273
Query 324 GGAGGAAGCTTGAGCGA-TTTCATGGACCGATTCAAAGA-CAGAAAATTGTCTGATTCGA 381
|||||||||||||| || ||||||||| |||| | |||| || ||| || ||||| |
Sbjct 274 GGAGGAAGCTTGAG-GACTTTCATGGAACGATCCGAAGATAAG-AAACTGCCTGATCCTT 331
Query 382 TGATCAGAGAGTTTACTCGTATGCTTCTCGAGGGTTTAGCCACGATTCACAGACACGGCT 441
|||| |||||||||||||||||| ||||||| || ||||||||||||||| |||| ||||
Sbjct 332 TGATAAGAGAGTTTACTCGTATGATTCTCGAAGGCTTAGCCACGATTCACGGACAAGGCT 391
Query 442 ATGTTCACTGCGATCTCAAACCCGAAAACATCCTTGTTTTCCCT-AGTTCTGTCTACAAG 500
|||| ||||||||||||||||||| ||||||||||||||||||| | | | ||||| |||
Sbjct 392 ATGTCCACTGCGATCTCAAACCCGGAAACATCCTTGTTTTCCCTAAATGC-GTCTATAAG 450
Query 501 AACGGCGCGT-G-GATCAGATCCTACGAATTGAAGATTTCTGATTTCGGGATGTCGAAAA 558
|| ||||| | | |||| | || || |||||||||||||||||||| ||| || | ||||
Sbjct 451 AAGGGCGCCTGGAGATC-G-TCTTATGAATTGAAGATTTCTGATTTTGGGTTGACCAAAA 508
Query 559 GAGATGGAGACACTCAGTGGTGGCAACCTC-GCAAACCATAT-GTGGGAACACCGATCTA 616
|||||||||||| | |||||||||| |||| | || | | |||||||| |||||||
Sbjct 509 GAGATGGAGACAATAAGTGGTGGCATCCTCATC-GCCCGT-TCGTGGGAACTGCGATCTA 566
Query 617 TATGTCGCCTGAG-TCGATCTCTCACGGGGAGATAGGGAAAGGACTTGATTTATGGTCGT 675
||||||||| | | ||| | ||||| || |||| ||||| |||||||||||||||||| |
Sbjct 567 TATGTCGCC-GGGATCGGTTTCTCATGGCGAGACAGGGAGAGGACTTGATTTATGGTCAT 625
Query 676 TGGGATGTGTGGTGTTGGAGATGTACACTAGAAAGAAGCCATGGTGGCATACTAACTATG 735
||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct 626 TGGGATGTGTGGTGTTGGAGATGTACACTGGAAAGAAACCATGGTGGCATAATAACTATG 685
Query 736 AATTAGAAGAG-CTCATGAAGTGTTATGAGCCGTTGTTTCCGCGTAATCTTCCTTGCGAT 794
| || || ||| |||| |||||| || | ||| || ||||| || ||||||||||||||
Sbjct 686 ACTTGGA-GAGTCTCAAGAAGTGGTACGCGCCACTGATTCCGAGTGATCTTCCTTGCGAT 744
Query 795 GCAAAACTCTTTCTCATGACCTGCTTTGCGTCCGA-AC-CAGATGAGAGGAAAGATGCGT 852
|| |||| |||| ||||| | ||||| ||| | || || |||||| ||||| ||||
Sbjct 745 GCTAAACACTTTATCATGGCTTGCTTCACGTTAAATACTCA--TGAGAGAAAAGACGCGT 802
Query 853 TGACATTGTTG-AGGCAAAGCTTCTTGCATGGAGATGTCAATAAGTTCACAAA 904
||||||||||| || | |||||||||| |||||| || |||||| |||||||
Sbjct 803 TGACATTGTTGGAGT-ATAGCTTCTTGCGTGGAGAGGTTAATAAGATCACAAA 854
> Ahg480128 jgi|Araly1|480128|fgenesh2_kg.3__2829__AT2G05060.1
Length=924
Score = 322 bits (174), Expect = 3e-87
Identities = 335/411 (82%), Gaps = 18/411 (4%)
Strand=Plus/Plus
Query 88 GTTCGTTTGGTTCGGTGAGTCTCTTCAAGTACAAAAGACAACGCGACGGCGAGACTCAAT 147
|||||| ||||||||||||||| |||||||||| ||| ||||||||||| || | |
Sbjct 68 GTTCGTCCGGTTCGGTGAGTCTCATCAAGTACAATGGACGCCGCGACGGCGAAACGCTTT 127
Query 148 ACGCCGCCGTGAAAACATCTAGCGA-CGA-AAATGCTAAGTCTCTCTACAAAGAGTTTCA 205
|||||||||||||||| || | | | | | | ||| | |||||||||||||||||||
Sbjct 128 ACGCCGCCGTGAAAACCTCCAAC-ATC-ATTCACGCTGACACTCTCTACAAAGAGTTTCA 185
Query 206 GATCCTCTCTC-AATTCAAGGGTTGTTCGAGAATCGTCCAATGCTACGGGAATGGAGTAA 264
|||| | || | ||||||| || ||||| ||||||||||||||||| |||| ||||
Sbjct 186 GATCTTGTC-CGAATTCAAAGGATGTTCAAGAATCGTCCAATGCTATGGGACCAAAGTAG 244
Query 265 AAGAGATATTTAACGACAAGGGTTACGTAGAATACAAGATTGC-CATGGAGTACGCATTT 323
|||||| | | | |||| | ||| ||||||| | ||||||| | |||||||||||||| |
Sbjct 245 AAGAGAGAATCACCGACGACGGTGACGTAGAGTTCAAGATT-CACATGGAGTACGCATCT 303
Query 324 GGAGGAAGCTTGAGCGATTTCATGGA-CCGATTCAAAGACA-GAAAATTGTCTGATTCGA 381
|||||||||||||| |||| || || | ||||||| || | | |||||| ||||| |
Sbjct 304 GGAGGAAGCTTGAGAAATTTTAT-GAGCAGATTCAAGGAAATG-AAATTGCCTGATCCTT 361
Query 382 TGATCAG-AGAGTTTACTCGTATGCTTCTCGAGGGTTTAGCCACG--ATTCACAGACACG 438
||||||| || |||||| |||||| |||| |||||||||| || | ||||| ||||||
Sbjct 362 TGATCAGAAG-GTTTACGCGTATGATTCTTGAGGGTTTAG-CA-GTTATTCATGGACACG 418
Query 439 GCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTTGTTTTCCCTAGTT 489
||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 419 GCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTCGTTTTCCCGAGTT 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39037867008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5