BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41930.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483279 jgi|Araly1|483279|fgenesh2_kg.4__2339__AT2G41930.1 1288 0.0
> Ahg483279 jgi|Araly1|483279|fgenesh2_kg.4__2339__AT2G41930.1
Length=1011
Score = 1288 bits (697), Expect = 0.0
Identities = 794/841 (94%), Gaps = 6/841 (1%)
Strand=Plus/Plus
Query 1 ATGTCGCCGGAGATGGAATTCGTGAAGGTTTTGGGAAAGGGTACTTACGGCTCCGTCGAG 60
||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCGCCGGAGATGGAGTTGGTGAAGGTTTTGGGAAAGGGTACTTACGGCTCCGTCGAG 60
Query 61 CTCTTCAGCCACAAACAAAACGACGGATCGTTGCTCTACAACGCAGTGAAGATCATGGAC 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CTCTTCAGCCACAAACAAAACGACGGATCATTGCTCTACAACGCAGTGAAGATCATGGAC 120
Query 121 TCTGAGAACTACGGTTCTATAGACCAAGAGTTTCGAATTCTGTCGGAACTCAGAGGATGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGAGAACTACGGTTCTATAGACCAAGAGTTTCGAATTCTGTCGGAACTCAGAGGATGT 180
Query 181 CCTTGTATCGTGCAATTGTGTGGGAACTCTCTTGTTCAAGGAATTGATTGCAATGGaaaa 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 181 CCTTGTATCGTGCAATTGTGTGGGAACTCTCTTGTTCAAGGAACCGATTGCAATGGAAGA 240
Query 241 aaaGTTTACATGATGTCAATGGAGTATGCAGCTGCTGGTACTCTAACTAATTTCATCAAA 300
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 241 AAAGTTTACAAGATGTCAATGGAGTATGCAGCTGCTGGTACTTTAACTAATTTCATCCAA 300
Query 301 AGAAACCGAACGAAGTTGTCGGATTCTGTTATTAAAGACTTCACTCGTATGATTCTACAA 360
|||||| |||| |||||||| ||||| |||||||||||||| ||||||||||||||| ||
Sbjct 301 AGAAACAGAACAAAGTTGTCAGATTCGGTTATTAAAGACTTTACTCGTATGATTCTAAAA 360
Query 361 GGATTGGTCTCGATTCATAATCATGGTTATGTTCATTGTGATCTTAAACCGGACAATATC 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGATTGGTCTCGATTCATAGTCATGGTTATGTTCATTGTGATCTTAAACCGGACAATATC 420
Query 421 CTTCTTTTTCCTCTTTACGATAAAGATACGTGGAATTGTTCTTACGAGTTGAAGATTTCG 480
|||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 421 CTTCTTTTTCCTATTTACGATAAAGAAACGTGGAATTGTTCTTACGAATTGAAGATTTCG 480
Query 481 GATTTCGGAATATCGACAAGGGCCGGAGACAAATCTGGTTGTTGGAGAGTCGATGAACCG 540
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 481 GATTTCGGAATATCGACAAGGGCCGGAGACAAATCTGATTGTTGGCGAATCGATGAACCG 540
Query 541 TGGGTGGGAACGTCTATCTACATGTCTCCTGAGTCAGTCAGCGACGGCACCACCGTTGAG 600
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 541 TGGGTCGGAACGTCTATCTACATGTCTCCGGAGTCAGTCCGCGACGGCACCACCGTTGAG 600
Query 601 AAAACCCTAGATTTGTGGTCACTTGG-TTGCATTGTGTTGAAGATGTATACCGGTAAGCG 659
||||||||||||||||||||| |||| |||||| |||||| |||||||||| |||||||
Sbjct 601 AAAACCCTAGATTTGTGGTCA-TTGGGTTGCATAGTGTTGGAGATGTATACAAGTAAGCG 659
Query 660 GCCATGGTTAGGGTTTGAGAAAGATGTTAAGTCTCTTCTTTTGAATCAA-AAGGCACCAG 718
|||||||||||||||||| ||||||||| |||||||||||||| || || ||||||||||
Sbjct 660 GCCATGGTTAGGGTTTGATAAAGATGTTCAGTCTCTTCTTTTGGAT-AATAAGGCACCAG 718
Query 719 AGATTCCAGAGACTCTGCCGTGTGATGCAAGGCTGTTTTTGGAGAAGTGTTTCTCAAGAA 778
| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 719 AAATTCCAGAGACTGTGCCGTGTGATGCAAGACTGTTTTTGGAGAAGTGTTTCGCAAGAA 778
Query 779 AACCTGAGGAGAGAGGATCAGCTTCGGAGTTGCTGTTGCATCCGTTTTT-GACCGGAGAT 837
||||||||||||||||| ||||||| |||||| |||||||||||||||| ||| || |||
Sbjct 779 AACCTGAGGAGAGAGGAACAGCTTCCGAGTTGTTGTTGCATCCGTTTTTCGACGGG-GAT 837
Query 838 G 838
|
Sbjct 838 G 838
Score = 276 bits (149), Expect = 3e-73
Identities = 172/183 (94%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 873 GACGGGGATGGTGTTGAGGCTCAGAAAACCTCCGCCGATATCGAAAGATATTCCAACGAA 932
||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 829 GACGGGGATGGTG-TGAGGCTCAGAAACCCTCCCCCGATATTGAAAGATATTCCAACGAA 887
Query 933 GCCACGGAAATTGAAGGTTATTTCACAAAAGCCCCAACAGTTAAAGAAAGTCTCGAATAA 992
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 888 GCCACTGAAATTGAAGGTTATTTCACAAAAGCCCCAACAGTTTAAGAAAGTCTCGAACAA 947
Query 993 ACCCCTAAAGGTGAAGATTGTTCCTCCGAGACCCCCAAGATCCGATTTTGTCCCCGTTCT 1052
||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 948 ACCCCTAAAAGTGAAAATTGTTCCTCCGAGACCCCCAAGATCCGATTTTGTTCCCGTTCA 1007
Query 1053 ATA 1055
|||
Sbjct 1008 ATA 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5