BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41940.1
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935051 jgi|Araly1|935051|scaffold_403039.1 1155 0.0
> Ahg935051 jgi|Araly1|935051|scaffold_403039.1
Length=799
Score = 1155 bits (625), Expect = 0.0
Identities = 761/820 (93%), Gaps = 35/820 (4%)
Strand=Plus/Plus
Query 26 CTCTCCCTGATCTCTCTCTTCCATGGACGAAACCAACGGACGAAGAGAAACTCACGATTT 85
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CTCTCTCTGA--TCTCTCTTCCATGGACGAAACCAACGGACGAAGAGAAACTCACGATTT 61
Query 86 CATGAACGTCAACGTTGAATCCTTCTCTCAGCTTCCTTTCATCCGCCGTACTCCTCCCAA 145
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 62 CATGAACGTCAACGTTGAATCCTTCTCTCAGCTTCCTTTTATCCGCCGTACTCCGCCCAA 121
Query 146 AGAAAAAGCCGCCATTATTCGTCTCTTCGGCCAAGAGCTCGTCGGTGATAACTCCGACAA 205
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct 122 AGAAAAAGCCGCCATTATTCGTCTCTTCGGCCAAGAACTCGTCGGAGATAACTCGGAGAA 181
Query 206 CTTATCCGCAGAACCTTCTGATCATCAAACCACTACCAAGAACGATGAGAGCTCTGAGAA 265
|||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 182 CTTATCGGCAGTATTTTCTG---ATCAAACCACTACCAAGAACGATGAGAGCTCTGAGAA 238
Query 266 TATcaaggacaaagacaaagaaaaagataaggacaaagacaaagataacaacaacaacaG 325
|||||| | ||| | || |||||||||||||||||||||||||||||
Sbjct 239 TATCAA-G-----GAC----------A-AA-GACAAAGACAAAGATAACAACAACAACAG 280
Query 326 GAGATTCGAGTGTCACTACTGCTTCAGAAACTTCCCAACTTCTCAAGCCCTAGGTGGACA 385
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GAGATTCGAATGTCACTACTGCTTCAGAAACTTCCCAACTTCTCAAGCCCTAGGTGGACA 340
Query 386 TCAAAACGCTCACAAACGTGAACGTCAACACGCCAAACGCGGTTCCATGACATCATACCT 445
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CCAAAACGCTCACAAACGTGAACGTCAACACGCCAAACGCGGTTCCATGACATCATACCT 400
Query 446 T---CATCATCATCAGCCTCATGACCCTCACCACATCTACGGCTTCCTCAACAACCACCA 502
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 401 TCACCATCATCATCAGCCTCATGACCCTCACCACGTCTACGGCTTCCTCAACAACCACCA 460
Query 503 CCACCGTCACTATCCGTCTTGGACGACGGAAGCTAGATCATACTACGGCGGA-GG--GGG 559
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| || |||
Sbjct 461 CCACCGTCACTATCCGTCGTGGACGACGGAAGCTAGATCATACTACGGTGGAGGGCCGGG 520
Query 560 ACATCAAACGCCGTCGTACTACTCAAGGAATACTCTTGCTCCTCCTTCTTCTAACCCACC 619
|||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 521 ACATCAAACGTCGTCGTACTACTCAAGGAGTACTCTTGCCCCTCCTTCTTCTAACCCACC 580
Query 620 GACAATCAACGGAAGTCCTTTAGGTTTGTGGCGTGTACCGCCTTCCACGTCAACAAATAC 679
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 581 GACAATCAACGGAAGTCCTTTAGGTCTGTGGCGTGTACCGCCTTCCACGTCAACAAACGC 640
Query 680 TATTCAAGGCGTTTACTCATCTTCACCAGCTTCAGCGTTTAGGTCGCATGAGCAAGAGAC 739
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 641 TATTCAAGGCGTTTACTCATCTTCACCAGCTTCAGCGTTTAGGACGCATGAGCCAGAGA- 699
Query 740 TAATAAGGAGCCTAATAACTGGCCGTACAGATTGATGAAACCCAATGTGCAAGATCATGT 799
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 T--TAAGGAGCCTAATAACTGGCCGTACAGATTGATGAAACCCAATGTGCAAGATCATGT 757
Query 800 GAGTCTCGATCTTCATCTCTGACTTCttttattttatttt 839
||||||||||||||||||||||||| |||| |||| ||||
Sbjct 758 GAGTCTCGATCTTCATCTCTGACTT-TTTT-TTTT-TTTT 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41287119111
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5