BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G41945.3

Length=934
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg902176 jgi|Araly1|902176|Al_scaffold_0004_2826                    562    2e-159
  Ahg356760 jgi|Araly1|356760|fgenesh1_pg.C_scaffold_8000547           191    9e-48 


> Ahg902176 jgi|Araly1|902176|Al_scaffold_0004_2826
Length=477

 Score =  562 bits (304),  Expect = 2e-159
 Identities = 325/335 (97%), Gaps = 2/335 (1%)
 Strand=Plus/Plus

Query  57   atgggaacgagacaagtatacgaagagaaGCTTCGGCGTGGGAATCTTGATTATGATCCG  116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCG  60

Query  117  ACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCT  176
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   ACTATGAATCCTGGTCTTGGTTCTGCTCGCTGTCCTCGTTGTCTTTCTCTCTTAAACCCT  120

Query  177  AATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCT  236
            ||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct  121  AATTCTGAGAAAGGAGAGTGGATGATAACTCCAGTTTTGCACGATGCTGCTGCAGTGGCT  180

Query  237  GGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTAT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTAT  240

Query  297  CTTCAAAATCGGTTTTCC-GGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCT  355
            ||||||||||||||| || |||||||||||||| || |||||||| ||||||||||||||
Sbjct  241  CTTCAAAATCGGTTT-CCAGGGTCAAAGCGGCTCTCTTTTCTTGTTGGGGTTCCATTGCT  299

Query  356  TCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAG  390
             ||||||||||||||||||||||||||||||||||
Sbjct  300  GCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAG  334


 Score =  235 bits (127),  Expect = 4e-61
 Identities = 133/136 (98%), Gaps = 0/136 (0%)
 Strand=Plus/Plus

Query  504  GGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGT  563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  334  GGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGT  393

Query  564  GCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGA  623
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  394  GCTTCACATTATGGAATTTCTATGCTCACCCGCCGTATCGAAGAAGCTCATCTCTCTCGA  453

Query  624  ACTCAGAAAGAAGAGG  639
            || |||||||||||||
Sbjct  454  ACGCAGAAAGAAGAGG  469


> Ahg356760 jgi|Araly1|356760|fgenesh1_pg.C_scaffold_8000547
Length=390

 Score =  191 bits (103),  Expect = 9e-48
 Identities = 126/136 (93%), Gaps = 6/136 (4%)
 Strand=Plus/Plus

Query  504  GGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGT  563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  17   GGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGT  76

Query  564  GCTTCACATTATGGAATTT-CTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCG  622
            ||||||||||||||||||| ||||||| ||||  |    ||||||||||| |||| ||||
Sbjct  77   GCTTCACATTATGGAATTTTCTATGCTCACCCT-C----CGAAGAAGCTCGTCTCACTCG  131

Query  623  AACTCAGAAAGAAGAG  638
            ||||||||||||||||
Sbjct  132  AACTCAGAAAGAAGAG  147



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34653731553


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5