BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41950.1
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345995 jgi|Araly1|345995|fgenesh1_pg.C_scaffold_4002337 1188 0.0
> Ahg345995 jgi|Araly1|345995|fgenesh1_pg.C_scaffold_4002337
Length=792
Score = 1188 bits (643), Expect = 0.0
Identities = 725/765 (95%), Gaps = 4/765 (1%)
Strand=Plus/Plus
Query 97 TTTACCTTCTCTCGTTGCTTTCGATTCTTCGCGTCGTCTCTCTTTGCAACCAAAGAAGTT 156
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
Sbjct 30 TTTACCTTCTCTCGTTGCTTTTGATTCTTCGTGTCGTCTCTCTTTGCAACCAAAGAAGCT 89
Query 157 AAATCGTCTTCAAAGTCACTTATTTTCACCTCAACATCTCTCATTCTCTCAGTCTAATGT 216
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 90 AAATCGTCTTCAAAGTCACTTCTTTTCTCCTCAACATCTCTCATTCTCTCAGTCTAATGT 149
Query 217 CTCTCGTTACAGAGCGTTTTGTGTTTCTTCAAGCTCTCCTCCAGAGGGAACAGTCTCCGT 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 150 CTCTCGTTACAGAGCGTTTTGTGTTTCTTCAAGCTCTCCTCCAGAGGGAACAGTGTCAGT 209
Query 277 AGT-CGATTTCCATGAGAAAGATTGGTCCTTTCTCGAATCTATGGAAATTGACTCCACTG 335
|| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 210 -GTTCGATTTCCATGAGAAAGATTGGTCCTTTCTTGAATCTATGGAAATTGAATCCACTG 268
Query 336 AACATACTCAGAAGATTGAGAGGATCATAAAGGCTGGAGAATTATCCGAATCTTCGAGGG 395
||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 269 AACATACCCAGAAGATCGAAAGGATCATAAAGGCTGGAGAAATATCCGAATCTTCGAGGG 328
Query 396 TTTTGGTTTCAATTAGCTCCGAAACATTCGTTGATCGTTTGGTAGAATCTTCACCTTCTC 455
||||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||
Sbjct 329 TTTTGGTTTCAATTAGCTCAGAGTCTTTCGTTGATCGTTTGGTGGAATCTTCACCTTCTC 388
Query 456 AGCTTTTGCTCATTGTCCATGACTCCCTTTTTACGTTAGCCTGTATCAAAGAGAAGTACG 515
|||| ||||| |||||||||||||| |||||||||||||||||| |||||||||| ||||
Sbjct 389 AGCTCTTGCTTATTGTCCATGACTCTCTTTTTACGTTAGCCTGTGTCAAAGAGAAATACG 448
Query 516 ACAAAGTCAAATGTTGGCAAGGAGAAATGATCTATGTCCCGGAGAAATGGTCTCCATTAG 575
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||
Sbjct 449 ACAAAGTCAAATGTTGGCAAGGAGAATTGATCTATGTCCCTGAGAAATGGTCTCCTTTAG 508
Query 576 ACGCTGTGTTTCTCTACTTTCTTCCAGCTTTGCCTTTTGACCTCGACGAACTGTTCAAGA 635
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 509 ACGTTGTGTTTCTCTACTTTCTTCCAGCTTTGCCTTTTGACCTCGACGACCTGTTCAAGA 568
Query 636 CACTCTCTCAACGTTGTTCCTCAGGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGAC 695
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 569 CACTCTCTCAACGTTGTTCCTCAGGTGCACGAGTAGTAATCAGTCACCCGCAAGGTAGAC 628
Query 696 TAGGCTTGGAGCAGCAAAGGAAAGAGTTTTCAGATGTGGTCGTCTCTGATTTACCTGATG 755
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 629 AAGGCTTGGAGCAGCAAAGGAAAGAGTTTACAGATGTGGTCGTCTCTGATTTACCTGATG 688
Query 756 AGTCCACATTGAGTAATGTTGCTGAGAAGCATTCATTTGAGCTAACCCAGTTTGTTGATG 815
| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 689 ATTCCACATTGAGGAATGTTGCTAAGAAGCATTCATTTGAGCTTACCCAGTTTGTTGATG 748
Query 816 AGCAAGGCCTTTATCTCGCTGTTCTGAAATCCT-CTAAACAATAG 859
||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 749 AGCAAGGACTTTATCTCGCTGTTCTGAAATCCTTC-AAACAATAG 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37055475324
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5