BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41970.1
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483285 jgi|Araly1|483285|fgenesh2_kg.4__2345__AT2G41970.1 2464 0.0
> Ahg483285 jgi|Araly1|483285|fgenesh2_kg.4__2345__AT2G41970.1
Length=1518
Score = 2464 bits (1334), Expect = 0.0
Identities = 1468/1530 (96%), Gaps = 20/1530 (1%)
Strand=Plus/Plus
Query 1 AAACAGAGAGACTTTCAATAATTCTAAGAAAATTAATTTCCtttttt-ctcaaactatct 59
|||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||
Sbjct 1 AAACAGAGAGACTTACAATAATTCTAAGAAAATTAATTT-CTTTTTTCCTCAAACTTTC- 58
Query 60 ttttccagatttctaaacattttcaggctcgtttgatcttttttttCCCGACATTTATTC 119
||||| ||||||||||| |||||||||||| |||| | |||||||||||| ||||||
Sbjct 59 TTTTCAAGATTTCTAAATTTTTTCAGGCTCG-TTGA---TATTTTTCCCGACA-TTATTC 113
Query 120 AAACTTTTCAGAAACAGATCCTTCCTTTGTGATTTTCTGAAGTA-TTT-ACTCTCATCAT 177
||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct 114 AAAGTTTTCAGAAACAGATCCTTCCTTTGTGGTTTTCTGAAGTATTTTCACTCTCATCAT 173
Query 178 CATTTTCTTGGGTTGATTCAATGGCAGAATCAAGGTAAAAACAGAGATTGGCT-GAAACA 236
||||||||||||||||||| |||||| |||||||| ||||||||||| | | | ||||||
Sbjct 174 CATTTTCTTGGGTTGATTCTATGGCATAATCAAGGAAAAAACAGAGA-TCGATAGAAACA 232
Query 237 GAATCGGAACATA-A-GAATAAGACAAAACCCGTGTTGGCAAAAGATCTGAAGATATGTT 294
||||| ||| | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 GAATC-GAAAAGACATAAATAAGACAAAACCCGTGTTGGCAAAAGATCTGAAGATATGTT 291
Query 295 TTGTTGCGGTGGTGCGGATGAGGAACCCGCCGGTCCGCCCGCAAACCAGTATGCAGCCCC 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CTGTTGCGGTGGTGCGGATGAGGAACCCGCCGGTCCGCCCGCAAACCAGTATGCAGCCCC 351
Query 355 TCCTAACAAAGCCGGAAATCCCAATTTTGGCGGTGGGAATAGAGGGGAACCGAGGAATCC 414
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TCCTAACAAGGCCGGAAATCCCAATTTTGGCGGTGGGAATAGAGGGGAACCGAGGAATCC 411
Query 415 GAATGCACCGAGATCAGGAGCTCCTGCAAAGGTTTTGCCCATAGAGATCCCTTCTGTTGC 474
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TAACGCACCGAGATCAGGAGCTCCTGCAAAGGTTTTGCCCATAGAGATCCCTTCTGTTGC 471
Query 475 ATTGGATGAGTTGAACAGAATGGCGGGTAACTTCGGAAACAAGGCACTGATCGGTGAAGG 534
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 472 ATTGGATGAGTTGAACAGAATGGCCGGTAACTTCGGAAACAAGGCACTGATCGGTGAAGG 531
Query 535 TTCTTATGGACGTGTCTTCTGCGGCAAGTTTAAAGGAGAAGCTGTTGCTATCAAGAAACT 594
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 532 TTCTTATGGACGTGTCTTCTGCGGCAAGTTTAAGGGAGAAGCTGTTGCTATCAAGAAACT 591
Query 595 TGATGCTAGTTCTTCTGAAGAACCTGACTCAGATTTCACCTCACAGTTATCGGTGGTATC 654
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TGATGCTAGCTCTTCTGAAGAACCTGACTCAGATTTCACCTCACAGTTATCGGTGGTATC 651
Query 655 GCGGCTCAAACACGACCATTTTGTGGAGTTGCTGGGGTACTGCTTGGAGGCAAATAATCG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 652 GCGGCTCAAACACGACCATTTTGTGGAGTTGCTGGGGTACTGCTTGGAGGCAAATAACCG 711
Query 715 CATTCTCATTTACCAGTTTGC-AACTAAAGGTTCTTTACATGATGTATTACACGGGAGAA 773
||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 712 CATTCTCATCTACCAGTTTGCAAAC-AAAGGTTCTTTACACGATGTATTACACGGGAGAA 770
Query 774 AGGGAGTGCAAGGGGCTGAGCCAGGACCGGTGCTGAACTGGAACCAAAGGGTAAAGATTG 833
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 771 AGGGAGTGCAAGGGGCTGAGCCAGGACCTGTGCTGAACTGGAACCAAAGGGTGAAGATTG 830
Query 834 CATATGGAGCAGCCAAAGGGCTTGAGTTCCTTCACGAGAAGGTCCAGCCACCAATAGTCC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CATATGGAGCAGCCAAAGGGCTTGAGTTCCTTCACGAGAAGGTCCAGCCACCAATAGTCC 890
Query 894 ATAGGGACGTGAGGTCGAGCAATGTCTTGTTGTTTGATGACTTTGTGGCCAAAATGGCTG 953
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 891 ACAGGGACGTGAGGTCGAGCAATGTCTTGTTGTTTGATGACTTCGTGGCCAAGATGGCTG 950
Query 954 ATTTCAACTTGACCAATGCTTCCTCCGATACCGCGGCTAGGCTTCATTCTACTCGTGTTT 1013
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 951 ATTTCAACTTGACCAATGCTTCCTCCGATACCGCGGCTAGGCTTCACTCTACTCGTGTTT 1010
Query 1014 TGGGAACATTCGGCTACCACGCTCCAGAGTATGCAATGACAGGACAGATAACGCAGAAGA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TGGGAACATTCGGCTACCACGCTCCAGAGTATGCAATGACAGGACAGATAACGCAGAAGA 1070
Query 1074 GTGATGTGTATAGTTTTGGTGTTGTGCTATTGGAGCTCTTGACAGGAAGAAAACCCGTAG 1133
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GTGATGTGTATAGTTTCGGTGTTGTGCTATTGGAGCTCTTGACAGGAAGAAAACCCGTAG 1130
Query 1134 ATCATACCATGCCTAAAGGCCAACAAAGTCTTGTTACTTGGGCAACACCGAGACTAAGTG 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 ATCATACCATGCCTAAAGGCCAACAAAGTCTTGTTACTTGGGCAACACCGAGACTAAGTG 1190
Query 1194 AAGACAAAGTGAAACAATGCATAGATCCTAAGCTTAACAATGACTTTCCTCCCAAAGCAG 1253
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1191 AAGACAAAGTGAAACAATGCATAGATCCTAAGCTTAACAACGACTTTCCTCCCAAAGCAG 1250
Query 1254 TCGCCAAGTTGGCAGCCGTGGCGGCCTTGTGTGTTCAGTATGAGGCAGATTTCCGACCAA 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TCGCCAAGTTGGCAGCCGTGGCGGCCTTGTGTGTTCAGTATGAGGCAGATTTCCGACCAA 1310
Query 1314 ACATGACCATCGTTGTCAAGGCACTTCAGCCTCTTCTAAACTCTAAACCGGCCGGTCCTG 1373
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1311 ACATGACCATCGTTGTCAAGGCACTTCAGCCTCTTCTTAACTCTAAACCGACCGGTCCTG 1370
Query 1374 AGTCTACGTCCTAAACTAAACAATATACCATTTCTCTTGTTTTTGTTCAT-GTTGTTGTT 1432
||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 1371 AGTCTACGTCCTAAA-TAAACAATTTACCATTTCTCTTGTTTTTGTTCCTTGTTGTTGTT 1429
Query 1433 ATTATGGCTATTTTCTCCCTCTTTTCTGTTCCAAGAACTATGATTATTGGTTGTAAGATG 1492
|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1430 ATTATGGCTATTTT-TCTCTCTTTTCTGTTCCAAGAACTATGATTATTGGTTATAAGATG 1488
Query 1493 TTGTTATTTAAGCGAATGTAACTTATATTT 1522
||||||||||| ||||||||| ||||||||
Sbjct 1489 TTGTTATTTAATCGAATGTAATTTATATTT 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57097277255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5