BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41980.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935056 jgi|Araly1|935056|scaffold_403044.1 1583 0.0
Ahg938787 jgi|Araly1|938787|scaffold_502978.1 965 0.0
> Ahg935056 jgi|Araly1|935056|scaffold_403044.1
Length=961
Score = 1583 bits (857), Expect = 0.0
Identities = 914/942 (97%), Gaps = 2/942 (0%)
Strand=Plus/Plus
Query 395 TTTTGGCTAGGTTTGGACTCTCTATGGCTCCTGGTGGCAGTGCATTGAAAGAAGCTCTAG 454
|||||| ||||||||||||||| |||||||||||||||||||| ||||||||| || |||
Sbjct 1 TTTTGGGTAGGTTTGGACTCTCCATGGCTCCTGGTGGCAGTGCGTTGAAAGAAACTTTAG 60
Query 455 AATCTAACTCGACAGGCGTAGATTATGAGGTTAAGATGGCAAAGGTTGAGGCTAATAGCA 514
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 61 AATCTAACTCGACAGGCTTAGATTATGAGGTTAAGATGTCAAAGGTTGAGACTAATAGCA 120
Query 515 AACCAACAAAATCAGGTAGTGGCTCCATTGGAAAATTCCATTCGAGCAATGGTGTTTATG 574
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACCAACAAAGTCAGGTAGTGGCTCCATTGGAAAATTCCATTCGAGCAATGGTGTTTATG 180
Query 575 AGCTCCTTGAATGTCCGGTTTGTACAAATTTAATGTATCCTCCAATTCATCAGTGCCCGA 634
||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AGCTCCTCGAATGTCTGGTTTGTACAAATCTAATGTATCCTCCAATTCATCAGTGCCCGA 240
Query 635 ACGGCCACACATTGTGTTCAAGCTGCAAACTGAGAGTGCAGAACACATGCCCTACATGCC 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACGGCCACACATTGTGTTCAAGCTGCAAACTGAGAGTGCAGAACACATGCCCTACATGCC 300
Query 695 GCTATGAGCTTGGTAACATAAGATGCTTGGCTCTTGAGAAGGTTGCGGAATCATTGGAAG 754
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 GCTATGAGCTTGGTAACATAAGATGCTTGGCTCTTGAGAAGGTTGCAGAATCATTGGAAG 360
Query 755 TTCCATGCCGGTACCAAAATTTAGGGTGTCAGGACATTTTCCCATACTACAGCAAGCTCA 814
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TTCCATGCCGGTACCAAAATTTAGGGTGTCATGACATTTTCCCATACTACAGCAAGCTCA 420
Query 815 AGCACGAGCAGCATTGCAGGTTTCGATCCTACAGCTGTCCTTATGCTGGTTCTGAGTGTT 874
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 AGCACGAGCAGCATTGCAGGTTTCGATCCTACAACTGTCCTTATGCTGGTTCTGAGTGTT 480
Query 875 CAGTGACGGGTGATATTCCAACGCTTGTTGACCATCTCAAAGATGATCATAAAGTTGACA 934
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 CAGTGACGGGTGATATTCCAACGCTTGTTGACCATCTCAAAGATGATCATAAAGTTGATA 540
Query 935 TGCATGATGGGTGCACTTTCAACCATCGTTATGTGAAGTCAAATCCGCATGAGGTCGAGA 994
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 541 TGCATGATGGGTGCACTTTCAACCATCGTTATGTGAAGTCAAATCCGCACGAGGTCGAAA 600
Query 995 ATGCTACATGGATGCTTACGGTCTTCAACTGTTTCGGAAGACAGTTCTGCTTACACTTTG 1054
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 ATGCTACATGGATGCTTACGGTCTTCAACTGTTTTGGAAGACAGTTCTGCTTACACTTTG 660
Query 1055 AGGCGTTTCAGCTCGGGATGGCACCAGTGTACATGGCGTTTCTAAGGTTTATGGGAGACG 1114
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 661 AGGCGTTTCAGCTCGGGATGGCACCAGTGTACATGGCGTTTCTACGGTTCATGGGAGACG 720
Query 1115 AGAACGAGGCTAAGAAGTTCAGTTACAGCTTGGAAGTTGGAGCTCACAGTCGTAAACTAA 1174
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 721 AGAACGAGGCTAAGAAGTTCAGTTACAGCTTGGAAGTTGGAGCTCACAGCCGCAAACTGA 780
Query 1175 CATGGCAAGGGAT-CCCAAGAAGCATCAGAGACAGTCACAGGAAAGTCCGAGATAGTCAA 1233
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CATGGCAAGGGATTCCCA-GAAGCATCAGAGACAGTCACAGGAAAGTCCGAGATAGTCAA 839
Query 1234 GACGGACTCATAATCCCTAGAAACTTGGCTTTGTACTTCTCTGGCAGTGACAAAGAAGAG 1293
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GACGGCCTCATCATCCCTAGAAACTTGGCTTTGTACTTCTCTGGCAGTGACAAAGAAGAG 899
Query 1294 CTCAAGTTGCGAGTCACTGGACGGATTTGGAAAGAAGAATAA 1335
||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTCAAGTTGCGAGTCACTGGACGGATTTGGAAAGAAGAATAA 941
> Ahg938787 jgi|Araly1|938787|scaffold_502978.1
Length=973
Score = 965 bits (522), Expect = 0.0
Identities = 812/950 (85%), Gaps = 28/950 (3%)
Strand=Plus/Plus
Query 406 TTTGGACTCTCTATGGCTCCTGGTGGCAGTGCATTGAAAGAAGCTC-TAGAATCTAACTC 464
||||| ||| | ||||||||||| || ||||| |||||||||| || | |||||||| ||
Sbjct 12 TTTGGGCTCACCATGGCTCCTGGAGGTAGTGCTTTGAAAGAAG-TCATGGAATCTAATTC 70
Query 465 GACAGGCGTAGATTATGAGGTTAAGATGGC-AAA---G--GTTGAGGCTAATAGCAAACC 518
|| || | |||||||||||||| | ||| ||| | ||| | ||||| ||||||
Sbjct 71 AACGGGAATGGATTATGAGGTTAAAACGGCAAAAGTGGAAGTTAATAATAATAACAAACC 130
Query 519 AACAAAATCAGGTAGTGGC-TCCATTGG-AAA-AT----TCCATTCGAGCAATGGTGTTT 571
|||||| |||| ||| || ||||| ||| || ||||||||| |||||||||||
Sbjct 131 TACAAAACCAGGGAGT-GCAGGGATTGGAAAATATGGGATCCATTCGAACAATGGTGTTT 189
Query 572 ATGAGCTCCTTGAATGTCCGGTTTGTACAAATTTAATGTATCCTCCAATTCATCAGTGCC 631
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 190 ATGAGCTTCTTGAATGTCCCGTTTGTACAAATTTAATGTACCCTCCAATTCATCAGTGTC 249
Query 632 CGAACGGCCACACATTGTGTTCAAGCTGCAAACTGAGAGTGCAGAACACATGCCCTACAT 691
| || ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 250 CAAATGGCCACACATTATGTTCAAACTGCAAAGTGAGAGTGCAGAACACATGCCCTACAT 309
Query 692 GCCGCTATGAGCTTGGTAACATAAGATGCTTGGCTCTTGAGAAGGTTGCGGAATCATTGG 751
| ||||||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||
Sbjct 310 GTCGCTATGAGCTTGGTAATATAAGATGCTTAGCTCTTGAGAAAGTTGCAGAGTCTTTGG 369
Query 752 AAGTTCCATGCCGGTACCAAAATTTAGGGTGTCAGGACATTTTCCCATACTACAGCAAGC 811
||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||
Sbjct 370 AAGTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTTCCTTACTACAGCAAGC 429
Query 812 TCAAGCACGAGCAGCATTGCAGGTTTCGATCCT-ACAGCT-GTCCTTATGCTGGTTCTGA 869
| |||||||||||||||||||||||| | ||| ||| || |||||||||||||||||||
Sbjct 430 TTAAGCACGAGCAGCATTGCAGGTTTAGG-CCTTACA-CTTGTCCTTATGCTGGTTCTGA 487
Query 870 GTGTTCAGTGACGGGTGATATTCCAACGCTTGTTGACCATCTCAAAGATGATCATAAAGT 929
||| || || || |||||||| || || ||||||| |||||||||||||||||||||||
Sbjct 488 GTGCTCGGTTACAGGTGATATCCCCACACTTGTTGTTCATCTCAAAGATGATCATAAAGT 547
Query 930 TGACATGCATGATGGGTGCACTTTCAACCATCGTTATGTGAAGTCAAATCCGCATGAGGT 989
|| |||||||| || ||||| |||||||| || ||||| ||||||||||| ||||| ||
Sbjct 548 CGATATGCATGACGGATGCACCTTCAACCACCGATATGTAAAGTCAAATCCACATGAAGT 607
Query 990 CGAGAATGCTACATGGATGCTTACGGTCTTCAACTGTTTCGGAAGACAGTTCTGCTTACA 1049
||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||
Sbjct 608 CGAAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCTGTTTACA 667
Query 1050 CTTTGAGGCGTTTCAGCTCGGGA-TGGCACCAGTGTACATGGCGTTTCTAAGGTTT-ATG 1107
|||||||||||| ||||| |||| |||| |||||||||||||| || || | ||| |||
Sbjct 668 CTTTGAGGCGTTCCAGCT-GGGAATGGCTCCAGTGTACATGGCATTCCTTCG-TTTCATG 725
Query 1108 GGAGACGAGAACGAGGCTAAGAAGTTCAGTTACAGCTTGGAAGTTGGAGCTCACAGTCGT 1167
||||| ||||||||||| |||||||||||||||||||||||||| |||||||| | |||
Sbjct 726 GGAGATGAGAACGAGGCAAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATGGACGT 785
Query 1168 AAACTAACATGGCAAGGGATCCCAAGAAGCATCAGAGACAGTCACAGGAAAGTCCGAGAT 1227
||| ||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||
Sbjct 786 AAATTAACATGGCAAGGGATCCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCCGGGAC 845
Query 1228 AGTCAAGACGGACTCATAATCCCTAGAAACTTGGCTTTGTACTTCTCTGGCAG-TGACAA 1286
||||||||||||||||| ||||| |||||| | || | ||||||||||| || ||| |
Sbjct 846 AGTCAAGACGGACTCATCATCCCAAGAAACCTCGCACTCTACTTCTCTGG-AGGTGATAG 904
Query 1287 AG-AAGAGCTCAAGTTGCGAGTCACTGGACGGATTTGGAAAGAAGAATAA 1335
| |||| ||||||||| |||| || || || || |||||||| || |||
Sbjct 905 -GCAAGAACTCAAGTTGAGAGTGACCGGGCGAATCTGGAAAGAGGAGTAA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5