BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41990.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935057 jgi|Araly1|935057|scaffold_403045.1 1277 0.0
> Ahg935057 jgi|Araly1|935057|scaffold_403045.1
Length=938
Score = 1277 bits (691), Expect = 0.0
Identities = 854/933 (92%), Gaps = 10/933 (1%)
Strand=Plus/Plus
Query 124 GAAAGAGTCA-AGAGACATGCATGCGAAGACAGACTCGGAGGCAACAAGCATCGACGCAG 182
||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 5 GAAAGAGAAAGAGAGACATGCATGCGAAGACAGACTCGGAGGCAACAAGCATAGACGCGG 64
Query 183 CGGCTTTGTCTCCGCCGCGTTCAGCGATTAGACCTCTTTACTATGTACAGAGTCCATCAA 242
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 65 CTGCTTTGTCTCCGCCGCGTTCAGCGATTAGACCTCTTTACTACGTACAGAGTCCATCCA 124
Query 243 ACCATGACGTGGAGAAGATGTCATTTGGTTCTGGTTGCAGCCTAATGGGTTCACCTACAC 302
||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 125 ACCATGACGTGGAGAAGATGTCATTCGGGTCTGGTTGCAGCCTAATGGGTTCACCTTCAC 184
Query 303 ATCCACATTACTACCATTGCTCACCAATCCATCACTCCCGTGAGTCATCCACCTCTCGCT 362
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 185 ACCCACATTACTACCATTGCTCACCAATCCATCACTCCCGCGAGTCATCCACCTCTCGCT 244
Query 363 TCTCTGACCGTGCTCTCCTCTCTTACAAGTCCATCCGTGAACGTCGCCGATACATCAACG 422
|||| |||||||| || |||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 245 TCTCCGACCGTGCCCTTCTCTCTTACAAGTCCATCCGTGAACGCCGCCGGTACGTCAACG 304
Query 423 ACGGAGACGACAAAACTGACGGCGGAGATGACGACGACCCGTTTCGGAATGTGCGACTCT 482
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 305 ACGGAGACGACAAAACTGACGGCGGAGAT---GACGACCCGTTTCGAAATGTGCGCCTCT 361
Query 483 ACGTTTGGTTGCTCCTCTCCGTAATCTTCTTGTTCACAGTCTTCTCTCTTATACTCTGGG 542
||| |||||||||||||||| || ||||||||||||||||||||||||||||| | ||||
Sbjct 362 ACGCTTGGTTGCTCCTCTCCATAGTCTTCTTGTTCACAGTCTTCTCTCTTATATTGTGGG 421
Query 543 GTGCTAGCAAATC-CTACCCTCCCAAAGTTACT-GTAAAGGGGATGCTGGTGAGGGACTT 600
||||||||||| | ||||||||| |||||| | ||||||||||||||||||||| ||||
Sbjct 422 GTGCTAGCAAA-CACTACCCTCCTAAAGTT-GTCGTAAAGGGGATGCTGGTGAGGAACTT 479
Query 601 GAACTTGCAGGCAGGGAACGATCTTAGCGGAGTGCCTACGGACATGTTGTCTCTTAATTC 660
|||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 480 GAACGTGCAGGCAGGGAACGATCTCAGCGGAGTGCCAACGGACATGCTGTCTCTTAATTC 539
Query 661 GACGGTCAGGATATAT-TACCGTAACCCATCAACTTTCTTTGCCGTCCACGTCACTGCTT 719
|||||||||||| | | ||| | |||||||||| |||||| |||||||||||||||||||
Sbjct 540 GACGGTCAGGATCT-TCTACAGAAACCCATCAAATTTCTTCGCCGTCCACGTCACTGCTT 598
Query 720 CTCCTCTTCTCCTTCACTACTCCAACCTCCTACTATCCTCCGGTGAGATGAACAAGTTCA 779
||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 599 CTCCTCTCCTCCTTCACTACTCCAACCTCCTCCTCTCCTCCGGTGAGATTAACAAGTTCA 658
Query 780 CGGTTGGTAGAAATGGCGAAACGAACGTAGTGACGGTGGTGCAAGGCCATCAGATTCCCC 839
|||||| |||| | ||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 659 CGGTTGCTAGACACGGCGAAAGGACCGTAGTGACGGTGGTGCAAGGCCATCAGATTCCTC 718
Query 840 TCTACGGTGGTGTTTCTTTCCATCTTGATACACTCTCCCTGCCGCTTAATCTCACTATCG 899
||||||||||||| ||||||||||| || || |||||| | ||||||||||||||| | |
Sbjct 719 TCTACGGTGGTGTCTCTTTCCATCTCGACACTCTCTCCATCCCGCTTAATCTCACTCTTG 778
Query 900 TCCTCCATTCAAAAGCTTACATTTTGGGAAGACTCGTCACCTCCAAGTTCTATACAAGGA 959
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 TCCTCCATACAAAAGCTTACATTTTGGGAAGACTCGTCACCTCCAAGTTCTATACAAAGA 838
Query 960 TCATCTGCTCATTCACTCTCGACGCCAACCATCTCCCAAAATCCATCTCTCTTCTCCGCT 1019
|||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||| |
Sbjct 839 TCATCTGCTCATTCACTCTCAATGCCGACCATCTCCCAAAACCCATCTCTCTTCTCCGTT 898
Query 1020 CCTGTATTCCTTAACACTGATTACACGTGTGTG 1052
| |||| ||| |||||||||||| ||||||
Sbjct 899 CATGTAAAGATTACCACTGATTACACTTGTGTG 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5