BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41997.1
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333418 jgi|Araly1|333418|fgenesh1_pm.C_scaffold_872000002 276 6e-74
> Ahg333418 jgi|Araly1|333418|fgenesh1_pm.C_scaffold_872000002
Length=255
Score = 276 bits (149), Expect = 6e-74
Identities = 222/256 (87%), Gaps = 10/256 (4%)
Strand=Plus/Plus
Query 1 ATGACAAGTTTAATTGCATTTCTTTTCACTGTCCTTGTCATCGTATCTTCTGTTCATTGT 60
|||| ||||||| ||||| || ||||||||| ||| |||||||||||||||||||||||
Sbjct 1 ATGAAAAGTTTAGTTGCAATTATTTTCACTGCCCTCCTCATCGTATCTTCTGTTCATTGT 60
Query 61 CGTATGACAACTGCTAGTACTCCAGGTTATGGGATAAAGCAGGAGGATCGTCTATGCATC 120
|||||||||||| |||||||||||||||||| ||||||||||||||||||| |||| ||
Sbjct 61 CGTATGACAACTATTAGTACTCCAGGTTATGGAATAAAGCAGGAGGATCGTCGATGCCTC 120
Query 121 CAAGGACAAGAAGGAACAAAGTTATGTAGTTCTGGAACAAGT-CGCGACTGCCTTAACTT 179
||||||| |||||||||||| ||||||||||||||| || || |||||||||||||| ||
Sbjct 121 CAAGGACCAGAAGGAACAAAATTATGTAGTTCTGGATCA-GTACGCGACTGCCTTAAGTT 179
Query 180 TTGTTTAATTCGTGGTTATGCTGGTGGCTCGTGTTATGCTTATACTCTTGAT-CAATGTT 238
|||| |||||||||||||| || ||| | ||||| || | | ||| |||| || ||||
Sbjct 180 TTGTATAATTCGTGGTTATTCTAGTGCCACGTGT-AT--T-A--CTCCTGATGCA-TGTT 232
Query 239 GTTGTCGTATTCCTCC 254
|||||| ||||||||
Sbjct 233 GTTGTCACATTCCTCC 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9432500467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5