BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42000.2
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935058 jgi|Araly1|935058|scaffold_403046.1 322 2e-87
> Ahg935058 jgi|Araly1|935058|scaffold_403046.1
Length=259
Score = 322 bits (174), Expect = 2e-87
Identities = 229/255 (90%), Gaps = 6/255 (2%)
Strand=Plus/Plus
Query 172 AAGATTGAAAACGAAAATGGCAGATACAGGCAAAGGAAGCTCTGTCGCTGGCTGCAACGA 231
|||| |||||| |||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct 5 AAGAGTGAAAAAGAAAATGGCAGACACAGGCAAAGGAAGCTCTGTTACTGTCTGCAACGA 64
Query 232 TAGCTGTGGCTGCCCTTCTCCCTGTCCCGGTGGGAATTCCTGCAGGTGCAGGATGAGAGA 291
| |||||||||||||||||||||||||||| || || ||||||||||||| |||||||||
Sbjct 65 TCGCTGTGGCTGCCCTTCTCCCTGTCCCGGAGGCAAATCCTGCAGGTGCATGATGAGAGA 124
Query 292 AGCATCTGCTGGGGATCAAGGGCACATGGTGTGCCCGTGTGGGGAGCACTGCGGATGCAA 351
||| |||| ||||||||||||||||||| ||||||||||||||||||| || || |||||
Sbjct 125 AGCTTCTGGTGGGGATCAAGGGCACATGTTGTGCCCGTGTGGGGAGCAATGTGGCTGCAA 184
Query 352 CCCCTGCAACTGCCCCAAGACCCAA--AC---CC-AAACCTCCGCCAAGGGCTGCACCTG 405
||||||||||||||||||||||||| || || ||||||||||||||| ||| |||||
Sbjct 185 CCCCTGCAACTGCCCCAAGACCCAATCACAAACCCAAACCTCCGCCAAGGACTGAACCTG 244
Query 406 TGGTGAGGGTTGCAC 420
||||||||| |||||
Sbjct 245 TGGTGAGGGCTGCAC 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22263783528
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5