BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42005.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483287 jgi|Araly1|483287|fgenesh2_kg.4__2347__AT2G42005.1 2085 0.0
> Ahg483287 jgi|Araly1|483287|fgenesh2_kg.4__2347__AT2G42005.1
Length=1303
Score = 2085 bits (1129), Expect = 0.0
Identities = 1246/1304 (96%), Gaps = 2/1304 (0%)
Strand=Plus/Plus
Query 1 CTCTAATCAGGTATAGAGATGGGTTTGGAGGAACAAGGAAGGGCGAGAGAAGACACACCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTAATCAGGTATAGAGATGGGTTTGGAGGAACAAGGAAGGGCGAGAGAAGACACACCG 60
Query 61 CTTCTTGGTAAAGGAAGACCATTGTCGAGCAAGTTCAAGACTTTCGCTAATGTCTTCATT 120
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTTCTTGGTAAAGGACGACCATTGTCGAGCAAGTTCAAGACTTTCGCCAATGTCTTCATT 120
Query 121 GCTATCGTTGGTGCTGGTGTCCTTGGTCTTCCTTACGCCTTCAAACGAACCGGATGGCTC 180
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GCTATCGTTGGTGCTGGGGTTCTTGGTCTACCTTACGCCTTCAAACGAACCGGATGGCTC 180
Query 181 ATGGGTTTGCTTACGCTCTTTTCCGTCGCTGCTTTGATCAACCATTGCATGATGCTTCTT 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 ATGGGTTTGCTTACGCTCTTTTCCGTCGCCGCTTTGATCAACCATTGCATGATGCTTCTT 240
Query 241 GTTCATATCCGTCGCAAGCTTGGTGTCTCCAATATCGGATCTTTTGGGGACCTT-GGTTT 299
||||||||||||||||||||||||||||| ||||| || ||||||||||| ||| |||||
Sbjct 241 GTTCATATCCGTCGCAAGCTTGGTGTCTCTAATATTGGCTCTTTTGGGGATCTTGGGTTT 300
Query 300 CGCTGCCTGCGGCAATCTCGGGAGGTTCGTCGTCGACATTCTTATTATTTTGTCTCAGGC 359
|||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 -GCTGTTTGCGGCCACCTCGGGAGGTTCGTCGTCGACATTCTTATTATTCTGTCTCAGGC 359
Query 360 TGGGTTTTGTGTTGGATACCTTATCTTCATCGGTAATACTTTAGCTAATCTCTCTAAGCC 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 360 TGGGTTTTGTGTTGGATACCTTATCTTCATCGGTACTACTTTAGCTAATCTCTTTAACCC 419
Query 420 AACCAAGAGTACGACTTTGATGAGTCTGAGGCATTTAATGGGTGTGTCTCCTAAGAGTCT 479
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACCACGACTACGACTTTGATGAGTCTGAGGCATTTAATGGGTGTGTCTCCTAAGAGTCT 479
Query 480 CTACATATGGGGATGTTTTCCGTTTCAGCTGGGTTTGAATTCTATTAAGACACTCACTCA 539
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 480 CTACATATGGGGATGCTTTCCGTTTCAGCTGGGTTTGAATTCTATTAAGACTCTAACTCA 539
Query 540 CTTGGCTCCTCTGAGCATATTTGCTGATGTGGTCGATTTGGGTGCAATGGCGGTGGTGAT 599
|||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 540 CTTGGCCCCTTTGAGCATATTCGCTGATGTGGTTGATTTGGGTGCAATGGCGGTGGTGAT 599
Query 600 TGTGGAGGACATCAAGATTACGGTGGTGCAAAGGCCTCAAGTTGTCGCCTTTGGTGGCAT 659
||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 600 TGTGGAGGATATTAAGATTACAGTGGTGCAAAGGCCTCAAGTTGTTGCCTTTGGTGGTAT 659
Query 660 GTCTGTGTTCTTCTATGGTATGGGAGTGGCTGTTTACGCCTTTGAAGGGGTTGGAATGGT 719
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 GTCTGTGTTCTTCTATGGGATGGGAGTGGCCGTTTACGCCTTTGAAGGGGTTGGAATGGT 719
Query 720 TTTGCCTCTTGAATCCGAGACTAAGGATAAGGACAAGTTTGGCAAAGTGTTGGCACTCAG 779
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 720 TTTGCCTCTTGAATCCGAGACCAAGGACAAGGACAAGTTTGGCAAAGTGTTGGCACTCAG 779
Query 780 CATGCTATTCATTGCAGTGATGTATGGATCTTTTGGTGTGTTAGGCTACATGGCTTTTGG 839
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CATGCTATTCATAGCCGTCATGTATGGATCTTTTGGTGTGTTAGGCTACATGGCTTTTGG 839
Query 840 GGATGATACAATGGATATAATCACAGCTAACTTAGGGGCAGGAGTGGTGAGCAGTCTTGT 899
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 GGATGAAACGATGGATATAATCACAGCTAACTTGGGGGCAGGAGTGGTGAGCAGTCTTGT 899
Query 900 GCAGCTGGGGCTCTGTATCAACCTTTTCTTCACCTTTCCCTTGATGATGAACCCTGTGTT 959
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 GCAGCTGGGGCTCTGCATCAACCTTTTCTTCACCTTCCCCTTGATGATGAACCCTGTGTT 959
Query 960 TGAGATTGTGGAGAGACGTTTCTGGAGTGGAATGTACTGCGTCTGGCTCAGATGGCTGCT 1019
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGAGATCGTGGAGAGACGTTTCTGGAGTGGAATGTACTGCGTCTGGCTCAGATGGCTGCT 1019
Query 1020 CGTCTTGGCAGTGACTTTGGTGGCTCTCTTGGTGCCAAACTTTGCTGATTTTTTGTCATT 1079
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1020 TGTCTTGGCAGTGACGTTGGTGGCTCTCTTGGTGCCAAACTTTGCAGATTTTTTGTCATT 1079
Query 1080 GGTTGGCAGCAGCGTCTGTTGTGCGTTGGGCTTTGTGTTGCCTTCTTTGTTTCATCTGAT 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 GGTTGGCAGCAGCGTCTGCTGTGCGTTGGGCTTTGTGTTGCCTTCTTTGTTTCATCTTAT 1139
Query 1140 GGTCTTCAAAGACGAAATGGAGTGGAAGCAACGAGCTTTAGACGTGGGGATCCTGCTGCT 1199
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 GGTCTTCAAAGACGAAATGGGGTGGAAGCAACGAGCTTTAGACGTGGGGATCCTGCTACT 1199
Query 1200 GGGTGTCATTCTTGGTGTCTCAGGTACTTGGAGTTCTCTGACTGAGATCTTCCAAGAGTA 1259
|||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 1200 GGGTGTCATTCTTGGTGTCTCAGGTACTTGGAGTTCCCTGAGTGAGATCTTCCAGGAGTA 1259
Query 1260 GGTAGGTGAAAGAAATTGGACACATTGTTTCTTTTGTTGGAATT 1303
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGTAGGTGAAAGAAATTGGACACATTGTTTCTTTTGTTGGAATT 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5