BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42030.1
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483289 jgi|Araly1|483289|fgenesh2_kg.4__2349__AT2G42030.1 2135 0.0
> Ahg483289 jgi|Araly1|483289|fgenesh2_kg.4__2349__AT2G42030.1
Length=1693
Score = 2135 bits (1156), Expect = 0.0
Identities = 1552/1730 (90%), Gaps = 80/1730 (5%)
Strand=Plus/Plus
Query 1 GATCGGTGAAAATTTCCATTCGACGAATCGGAGTTCCAAAAGCTCGCTGACGAGTTCTCA 60
|||||||||||| |||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GATCGGTGAAAAATTCCCTTTGACGAATCGGACTTCCAAAAGCTCGCTGACGAGTTCTCA 60
Query 61 ATAGTAACCTCTCCGGCGCTTATCGTGAAAAACCCTATGTTCCAGACTTCTCTTACGCTT 120
| ||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct 61 ACAGTAACCTCGCCGGAGCTTATCGTCTAAAACCCTCTGTTCCAGACTTCTCTTACGCTT 120
Query 121 TCCTTGCAAAATCTGCCTCAATTTTGGATTGAAGACAAGAGCTTGA-GGCTTTTTCTCCA 179
|||||||||| ||||||||||||||||||| ||| ||||||||||| ||| ||||||| |
Sbjct 121 TCCTTGCAAATTCTGCCTCAATTTTGGATTAAAGGCAAGAGCTTGAGGGC-TTTTCTCTA 179
Query 180 ATCTTAATTGA-AACTT-TGGGG---TTTTTCTCACGGGGATTTTGCGAATTAGGGTTTC 234
||||||||||| || || |||| |||||| |||||||||||||||| ||||||||||
Sbjct 180 ATCTTAATTGAGAA-TTGGGGGGTTTTTTTTCACACGGGGATTTTGCGATTTAGGGTTTC 238
Query 235 GGATTGGGGATTTTGTTACATCGAAAGGACTTTGGAGATTCAGCGTTGGGCTCGGTAATT 294
||||||||||||||||||||||||||||| || || || | |||
Sbjct 239 AGATTGGGGATTTTGTTACATCGAAAGGAC--------TT-----TT-GG---AG--ATT 279
Query 295 GAAGAATGCAGAATTCATAAACACCGCTCTGGA-ATTTTACT-TTTTAGGATAACAAAGG 352
||| |||| ||||||||||||| | |||||||| ||||| || | |||||||||||||
Sbjct 280 GAATAATGGAGAATTCATAAAC-CGGCTCTGGACATTTT-CTGTAGCAGGATAACAAAGG 337
Query 353 AGGGT-CATTTTATCTGTTAATTGATGGGTGAAGAGATATCTAGCACTGTGAACCTGGAT 411
| || |||||| | ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 338 A--GTCCATTTTTTTTGTTAATTGATGGGTGAGGAAATATCTAGCACAGTGAACCTGGAT 395
Query 412 TTGAATCTGGGTCCTGATCCTGAGTTAGGTCTCGAGCCAGCGACGAATTATGCTCGGTCT 471
|||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 396 TTGAATCTGGGTCCTGGCCCTGAGTTAGTTCTCGAGCCAGCAACGAATTATGCTCGGTCT 455
Query 472 GATTGGGGTAATGGACTTGCTGCTAGGGAATCCGAATCTCTGAGAAGGTTTAGAAGTCGG 531
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GATTGGGGTAATGGAC---CTGCTAGGGAATCCGAATCTCTGAGAAGGTTTAGAAGTCGG 512
Query 532 TACCGGTCACGTTTCAGACGGATTGATATGCTTCCGGTTCTTGCTGAGACACATAGCCCG 591
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 513 CACCAATCACGTTTCAGACGGATTGATATGCTTCCTGTTCTTGCTGAGACACATAGCCCG 572
Query 592 GCGATGGAATTGAGTCAGTTGTTGATCACTTCTGGAAATGTAGTTGCTTTGCCTGCTGGT 651
||||||||||||||||| |||||||||||||||| |||||||||||||||| | |
Sbjct 573 GCGATGGAATTGAGTCAATTGTTGATCACTTCTGCAAATGTAGTTGCTTTG-C--C---- 625
Query 652 GAGGGAAGCATGGCTAGTGGAGAAAGGGTCATCGAGGACTCCAAAAAGTGCGAGAATGGG 711
||| | | ||||||||||||||| |||| | || ||||||||||||||||||
Sbjct 626 ------AGC-T-G---GTGGAGAAAGGGTCAGCGAGAATTCGAAAAAGTGCGAGAATGGG 674
Query 712 AGCAAAGTGATGGCAGAAGACAATGTAACAGAGGAGAAAAGAGATGTTGAGAAGAGCGTT 771
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AGCAAAGTGATGGAAGAAGACAATGTAACAGAGGAGAAAAGAGATGTTGAGAAGAGCGTT 734
Query 772 GGCAGCGATGGGAGCTTTTTCGATTGTTATATATGTTTGGATTTGTCCAAGGATCCAGTT 831
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 735 GGCAGCGATGGGAGCTTTTTTGATTGTTATATATGTTTGGATTTGTCCAAGGATCCAGTT 794
Query 832 GTTACTAATTGTGGCCACCTTTACTGTTGGTCTTGCCTTTACCAGTGGCTACAGGTTTCA 891
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 795 GTCACTAATTGTGGCCACCTTTACTGTTGGTCTTGCCTTTACCATTGGCTACAGGTTTCC 854
Query 892 GAGGCAAAAGAATGCCCGGTTTGTAAAGGGGAGGTATCTGTGAAAACAGTGACTCCAATC 951
|||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 855 GAGGCAAAGGAATGCCCGGTTTGCAAAGGGGAGGTATCCGTGAAAACTGTGACTCCAATC 914
Query 952 TATGGACGTGGGATACAGAAAAGAGAATCTGAGGAGGTTTCAAACACCAAGATCCCTTCG 1011
||||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||||
Sbjct 915 TATGGACGTGGGAAACATAAAAGAGAATCTGAAGAGGTTTCAACCACCAAGATCCCTTCG 974
Query 1012 AGACCCCAAGCACGACGCACAGAGAGTTTGAGGACTACACTTAACAGGTCAGGTCATATA 1071
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 975 AGACCCCAAGCACGGCGCACAGAGAGTTTGAGGACTACACTTCACAGGTCAGGTTATATA 1034
Query 1072 CCAACGGAAAT-ATTTAGACATTTGCAGGATAGGCTTGAAAGGGAATCTAGTACAGGAGA 1130
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1035 CCAACGGAAATGATT-AGACATTTGCAGGATAGGCTTGAAAGGGAATCTAGTACAGGTGA 1093
Query 1131 AAGACGCGCCAGACCATCTCTTAACCGGTTTATGACTTCGAGGGGAGTTAGAGCAGAGGA 1190
||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1094 AAGACACGCCAGACCATTTCTTAACCGGTTTATGACTTCGAGGGGAGTTAGAGCGGAGCA 1153
Query 1191 GAACCAGTCTAGTGAAGCACTGGTTGAACCTTCATCAGATGAGATTAACGATATTGATCT 1250
||||||||||||||||||| | |||| ||||||| |||||||||||||||||||||||
Sbjct 1154 GAACCAGTCTAGTGAAGCATTCGTTGCACCTTCA---GATGAGATTAACGATATTGATCT 1210
Query 1251 GATCTTAAATAATGCCCCTGAAAATGAAGAGGAAAACGAAAACCTAAGCTCGTCACGTGC 1310
||||||||| | | |||||||| |||||||||||||||||||||| || |||||||||||
Sbjct 1211 GATCTTAAACACTTCCCCTGAACATGAAGAGGAAAACGAAAACCTGAGGTCGTCACGTGC 1270
Query 1311 TTTGGCAACCCAGAGAC-GATGGGCACAGATGTAT--GGGAGGGTGTCGTCGTTTACTTT 1367
|||| ||| || ||||| | |||||||||| | | |||||| ||||||||||||||||
Sbjct 1271 TTTGTCAATCCGGAGACAG-TGGGCACAGA-G-ACCCGGGAGGATGTCGTCGTTTACTTT 1327
Query 1368 GAGCTCTGCTGAAAGATTAGCGGATACTTATTTGATAACACATGCATTGGGGAGGAACCA 1427
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1328 GAGCTCTGCTGAAAGATTAGTGGATGCTTATTTGATAACACATGCATTGGGGAGGAACCA 1387
Query 1428 AGAACAAAACAGCAGTCCT-CCTGTTGGTGTTGAAGACAGGGATTCGTTCTCAAGCATAG 1486
||| ||||||| || |||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 1388 AGAGCAAAACAACAATCCTTCC-GTTGGTGTTGAAGACAGGGATTCGTTTTCAAGCATAG 1446
Query 1487 TAGGTGTGATAAACTCGGAGAGTCAAGTTGAAACGGCGGCTGAGATTAATTCAATGTTGA 1546
||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 1447 TAGGTGTAATAAACTCGGAGAGTCAAGTTGATACTGCGGCTGAGATTGATTCAATGTTGA 1506
Query 1547 CTGTATCGACTTCTTCGTCTGTTAGAAGACATGAGAACAGTTCAAGGGTCTCTGATGTTG 1606
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1507 CTGTATCGACATCTTCGTCAGTGAGAAGACATGAGAACAGTTCAAGGGTCTCTGATGTTG 1566
Query 1607 ACAGTGCAGATTCTCGTCCACTgaggagaagaaggagattagcttagaagagaatggagg 1666
|||||||||||||||||||||||||||| ||||||||||| ||||||||| || | ||
Sbjct 1567 ACAGTGCAGATTCTCGTCCACTGAGGAGGAGAAGGAGATTGGCTTAGAAG-GA--GCAG- 1622
Query 1667 agaagaaagaggaagctagagTAATAATCTGTAGTAGAAAGCAGTGattt 1716
| |||| | | || |||| | | || ||||||||||||||||| |||||
Sbjct 1623 A-AAGA--G-G-AATCTAG-G-A-TATTCTGTAGTAGAAAGCAGCGATTT 1664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68181538550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5