BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42040.1
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483290 jgi|Araly1|483290|fgenesh2_kg.4__2350__AT2G42040.1 1522 0.0
> Ahg483290 jgi|Araly1|483290|fgenesh2_kg.4__2350__AT2G42040.1
Length=1143
Score = 1522 bits (824), Expect = 0.0
Identities = 1039/1134 (92%), Gaps = 49/1134 (4%)
Strand=Plus/Plus
Query 47 aaaaagagCTCACAACAAGAACAC-A-A-CA-CCACAAAGCCTTCCCCTTTAtttttt-t 101
|||||||||||||||||||||||| | | || ||||||||||||| ||||||||||||
Sbjct 21 AAAAAGAGCTCACAACAAGAACACAACACCACCCACAAAGCCTTCTCCTTTATTTTTTCC 80
Query 102 C----CCGTGTAACC-aaaa-aaatcaaaaaGATTACTCTCTCTTTAATATCTGGGTTTA 155
| |||||||||| |||| ||| |||||||||| ||||| ||||||||||||||||
Sbjct 81 CAAGTCCGTGTAACCAAAAACAAAAAAAAAAGATTA--CTCTC-TTAATATCTGGGTTTA 137
Query 156 TACTACAGTCCTTCTTTGGTGcaaagatcccaaaaaatcaaaatcgaaagagagaataa- 214
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||
Sbjct 138 TACTACAGTCCTTCTTTGGTGCAAAGATCCCAAAAAA-CAAAATCGAAAGACAGAA-AAG 195
Query 215 atcaa-aaggaagaatcTTTATCTGCT-T-TCTCTCGATGAGGATCCGGAAACGACAAGT 271
| || ||||||||||| || |||||| | |||| |||||||||||||||||||||||||
Sbjct 196 A-AAAGAAGGAAGAATC-TT-TCTGCTATATCTCCCGATGAGGATCCGGAAACGACAAGT 252
Query 272 GCCTCTTCCT-TTATCGTCTCTATTACCAGTTCCTCTATCAGATCTCTACTTTAACCGCT 330
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GCCTCTTCCTCTT-GCGTCTCTATTACCAGTTCCTCTATCAGATCTCTACTTTAACCGCT 311
Query 331 CACCGACGGCCACCGCGAGATACTTTCGCGGTGGTTATAAAGACGGCGGTGATGATTTTG 390
||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||
Sbjct 312 CACCGACGGCCACCGCGAGATACTTTCGCGGTGGTTATAGAGACGGAGGTGAAGGTTTTG 371
Query 391 GTTCTCTTCAGCTTTCGCTTCCGCCGCCGTCGCAGATTTCTGATCGGCTTATTCAAAGAG 450
||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct 372 GTTCTCTTCAGCTTTCGCTTCCGCCGCCGTCTCCGATTTCTGATCGGCTGATTCAAAGAG 431
Query 451 ATTTGATAAAGAAGAAGGAGGAGGTCAAGGCTTTGGATG---AT-G--ATAATGGTGATG 504
||||||| ||||||| |||||||| |||||||||||| || | | |||||||||
Sbjct 432 ATTTGAT---GAAGAAGAAGGAGGTCGAGGCTTTGGATGATAATGGTCGTGATGGTGATG 488
Query 505 TAGACGTCAAGAGTCGTACTGATGCATCGGGCAGCAAGAATGTTAATCCCCGAGGAGAAT 564
||||||| | ||||||||||||||| |||||||||||||||| ||||| ||||||||| |
Sbjct 489 TAGACGTGATGAGTCGTACTGATGCTTCGGGCAGCAAGAATGCTAATCTCCGAGGAGAGT 548
Query 565 CCGTCTCTTCAATACAAGTTGTCGAGAAGAATGAAAAGGTTGTGTCTTTGAGGAAGAGAA 624
||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 549 CCGACTCTTCAACACAAGTTGTCGAGAAGAATGAAAAGGTTGCATCTTTGAGGAAGAGAA 608
Query 625 GAGGCTTTATCAACTTTGAGGATTACGAAGATGAGGAAGATGAAGAAGCTAGTGGCGGTG 684
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GAGGCTTTATAAACTTTGAGGATTACGAAGATGAGGAAGATGAAGAAGCTAGTGGCGGTG 668
Query 685 GAGGCCGTATTAATAAAGGGAAAAAGAAAGCGAAAAAGAGCGGTGGTGGGTTAGAGGAAG 744
|||| || |||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 669 GAGG-CG--GTAATAAAGGGAAAAAGAAAGGGAAAAAGAACGGTGGTGCGTTAGAGGAAG 725
Query 745 GATCACGGTGCAGCCGTGTTAACGGTAGAGGATGGAGATGTTGTCAGCAAACGCTTGTTG 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GATCACGGTGCAGCCGTGTTAACGGTAGAGGATGGAGATGTTGTCAGCAAACGCTTGTTG 785
Query 805 GTTATTCTCTTTGTGAGCATCATCTCGGTAAAGGAAGGGTAAGGAGCATGAACAAGAGTG 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GTTATTCTCTTTGTGAGCATCATCTCGGTAAAGGAAGGGTAAGGAGCATGAACAAGAGTG 845
Query 865 GTGGTGGTCGTGGCGGCGAGAAAAAGGCGGTGGTGGTGGAAGTGAAGAAGAAGAGAGTAA 924
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 846 GTGGTGGTCGTGGCGGCGAGAAAAAGGCGGTGGTGGTGGAAGTGAAGAAGAAGAGAGTGA 905
Query 925 AGCTTGGCATGGTAAAGGCACGTTCAATAAGTAGTTTGCTTGGACAAACCAGCACTAGTG 984
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 906 AGCTTGGGATGGTAAAGGCACGTTCGATAAGTAGTTTGCTTGGACAAACCAGCACTAGTG 965
Query 985 GTGGTACTAGTGGTGATGTTGATCAGGGTGAGATAAGTGCACCTGCTGATCAGTTCGCTG 1044
|||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 966 GTGGTA---GTGGTGATGTTGA---GGGTGAGATAAGTGCACCTGCTGATCAGTTTGCTG 1019
Query 1045 CATGTGATAAGTAGGTCTGTTGATCAGCATTTGCATGTATATGGATATGTGTATGTTTAT 1104
||||||||| ||| ||||||||| ||||||||||||||||||| ||||| || |
Sbjct 1020 CATGTGATAGGTAAGTCTGTTGACCAGCATTTGCATGTATATGTTTATGTACAT-T---- 1074
Query 1105 GTACATGATGATAATGGGCATAGCTCTATGTATTGGGTGTGTGAACATGTCTAT 1158
||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1075 GTACATGATGATAATGGACATAGCTCTATGTATTGGGTGTGTGAACATGT-TAT 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5