BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42060.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483291 jgi|Araly1|483291|fgenesh2_kg.4__2351__AT2G42060.1 1362 0.0
> Ahg483291 jgi|Araly1|483291|fgenesh2_kg.4__2351__AT2G42060.1
Length=971
Score = 1362 bits (737), Expect = 0.0
Identities = 842/893 (94%), Gaps = 5/893 (1%)
Strand=Plus/Plus
Query 63 AAACACACAAGATTGCTAAATC--AAAGAGACAAACTCAATGGAGTACAAACATTTCAGC 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 47 AAACACACAAGATTGCTAAATCAAAAAGAGACAAACTCAATGGAGTACAAACATTTCAGC 106
Query 121 CATCCACACACTCTAAAACTCCAACAGATTCAGCCACATAAAAGCTCAGATTCTTCAGTA 180
||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 107 CATCCACACTCTCTAAAACTCCAACAGATTCAGCCACATGGAAGCTCAGATTCTTTAGTA 166
Query 181 ATCTGCTCAGGTTGTGAATCAGCCATCTCTGAATCCGAAACCGCGTATATCTGTTCAACA 240
|||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 167 ATCTGCTCAGGTTGCGAATCAGCCATCTCTGATTCCGAAACCGCATATATCTGTTCTACA 226
Query 241 TGTGACTTCAATCTTCATGAGCAATGTGGTAACGCAGTGCGTGGGATGCAACATCCTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 227 TGTGACTTCAATCTTCATGAGCAATGTGGTAACGCAGTGCGTGGGATGCTACATCCTTCT 286
Query 301 CACGCTGGTCTCCACCACTTGACTCTAGTCCCTTACACAACTTACAGCGCTGGTACCTTC 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 287 CACGCTGGTCTCCACCACTTGACTCTAGTCCCTTACACAACTTACAGCGCCGGTATCTTC 346
Query 361 CTCTGCAGAGCCTGTGGCTGCACTGGAGGTAAAGGGTTCTCTTACTGTTGTCCTTTGTGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CTCTGCAGAGCCTGTGGCTGCACTGGAGGTAAAGGGTTCTCTTACTGTTGTCCTTTGTGT 406
Query 421 GACTTTGACCTTCATGTTCAATGCGCTCACCTGCCTCAGGTCTTGGTTCATGAGTCTCAT 480
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 407 GACTTTGACCTCCATGTTCAATGCGCACACCTGCCTCAGGTCTTGGTTCATGAGTCTCAT 466
Query 481 CCTATGCATAGTCTTCTTCTTGTCTACAACAGTACTCCTCCTATGTCTTTTACTCAGTTT 540
||| | || ||||| |||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 467 CCTCTCCACAGTCTACTTCTTGTCTACAACAGTGCTCCTGCTATGCCTTTTACTCAGTTT 526
Query 541 GGTTTCGGGAATCAGCTTGTTTGCAATCTTTGTAATATGACTATGGATGGTAGGTTTTGG 600
|||| || ||||||| |||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 527 GGTTACGCGAATCAGTTTGTTTGCAATCTTTGCAACATGGCTATGGATGGTAGGTTTTGG 586
Query 601 TCTTACAACTGTTATGCTTGTAACTATCATATTCATGCTTCATGTGCTGTGAATAAGCCC 660
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TCTTATAACTGTTATGCTTGTAACTATCATATTCATGCTTCATGTGCTGTGAATAAGCCT 646
Query 661 AATCCAGTGGCTGCTTCTGCTGAGAACTGTGGGGCGAGTGATGAAGGAAAGACACCGACT 720
|| ||||||||| ||||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct 647 AAGCCAGTGGCTCCTTCTGCTGAGAAGTGTGGGACGAGTGATGAAGGAAAGATACCGACC 706
Query 721 GCTGAATCTGTTCCTGTTCAGGGTTTGGAGACTGAGCAGACGGAACAAGTAGCTGCAATA 780
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 707 CCTGAATCTCTTCCTGTTCAGGGTTTGGAGGCTGTGCAGACGGAACAAGTAGCTGCAACA 766
Query 781 ACAGAGCAAGTGGAAGATCCAGTTTTGAGGCAACAGCTTGAGCTTCAGAAGCTTCAGCTT 840
|||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||
Sbjct 767 ACAGAGCAAGTGGAAGATCCAGCTTTGAGGCAACAGCTTGAACTTCAGAAGCTCCAGCTT 826
Query 841 GAGCTAGATATGAGTTCTGCTCTCGCAAACATGATTGGTTCCTTCAATCTCAGTTC-TTT 899
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 827 GAGCTAGATATGAGTTCTGCTATCGCAAACATGATTGGTTCCTTCAATCTCAGTTCGTTT 886
Query 900 CGTTTGAAGTGTCTTTGTGTTTCAGTTTGTTTGATTTTATGCATTTACATGTG 952
||||||||| ||||||| ||||||||||||||||| |||||||||||||||
Sbjct 887 -GTTTGAAGTATCTTTGTATTTCAGTTTGTTTGATTG-ATGCATTTACATGTG 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5