BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42070.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483292 jgi|Araly1|483292|fgenesh2_kg.4__2352__AT2G42070.1 1914 0.0
> Ahg483292 jgi|Araly1|483292|fgenesh2_kg.4__2352__AT2G42070.1
Length=1346
Score = 1914 bits (1036), Expect = 0.0
Identities = 1264/1368 (92%), Gaps = 40/1368 (3%)
Strand=Plus/Plus
Query 1 ATCTCCTCAAATGTCAAATTTTTGGAACGAAATAGATTGGCCATCGAGAGAGGAGCTTCA 60
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||
Sbjct 1 ATCTCCTCAAATGTCAAATTTTT---ACGAAATTGATTGGCCATCGAGAGAGAAGCTTCA 57
Query 61 TTGAC--AAAG-AGTCCTATAGCCGGAAGT--GAAGAAATTTCCGGTGCGTATAATGCT- 114
||||| |||| || ||||| | || | | || | |||||||||||||||||||
Sbjct 58 TTGACAAAAAGAAG-CCTAT---TGAAATTCCGGTGACA-TTCCGGTGCGTATAATGCTC 112
Query 115 AAAGGCCGTCCAGATCTTGGGTTGGTCATCAGGGTTAACCATCTCACAGAGATTGACCAA 174
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 AAA-GCCGTTCAGATCTTGGGTTGGTCATCAGGGTTAACCATCTCACAGAGATTGACCAA 171
Query 175 GACTCGCAAGTCctctaccgtctctttcatctcgtcatctctcaa--tct---c--tc-c 226
|||||||||||||||| ||||||||||||||| ||||||||||| ||| | || |
Sbjct 172 AACTCGCAAGTCCTCTAGCGTCTCTTTCATCTCTTCATCTCTCAATCTCTCCACTTTCGC 231
Query 227 -tctgtcacttcgagctctcctcGGAGAATCTTCTCTTTCAAGCCAAC-CAGAATGTCTT 284
||||||||||||||||||||||| | |||||||||||| || ||||| | |||||||||
Sbjct 232 TTCTGTCACTTCGAGCTCTCCTCGAAAAATCTTCTCTTTTAACCCAACTC-GAATGTCTT 290
Query 285 CCTCACTTCCCGGGTCTGACCCAGTTGCAAATTCCCCGACTTTCGTCTCTGTTCAATCAG 344
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 291 CCTCACTTCCCGGGTCTGACCCAGTTGCAAATTCTCCGACTTTCGTCTCTGTTCAATCAG 350
Query 345 CTGGAGATGTTCGTAAGATAAAGTTCTGTCAATGGTGTGGAGGACCAACCAAGCATGAAA 404
|||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 351 CTGGGGATGTTCGTAAGATAAAGTTCTGTCAATGGTGTGGAGGACCGACGAAGCATGAGA 410
Query 405 TACCTGACGGTGAAGAGAAATTGAGAGCTATTTGCACACATTGCGGCAAAATCGCTTATC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 411 TACCTGACGGTGAAGAGAAATTGAGAGCTATTTGCACACATTGCGGCAAAATCGCATATC 470
Query 465 AGAATCCTAAGATGGTTGTTGGTTGCCTTATAGAGCATGAAGGAAAAGTTTTACTTTGCA 524
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 471 AGAATCCTAAGATGGTTGTAGGTTGCCTTATAGAGCATGAAGAAAAAGTTTTACTTTGCA 530
Query 525 AACGTAACATTCAACCTTCACACGGTTTATGGACTCTTCCTGCTGGTTATCTAGAAGTTG 584
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 531 AGCGTAACATTCAACCTTCACATGGTTTATGGACTCTTCCTGCTGGCTATCTAGAAGTTG 590
Query 585 GAGAATCAGCTGCACAAGGAGCAATGAGGGAAACTTGGGAAGAAGCAGGAGCTACTGTGG 644
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 591 GAGAGTCAGCTGCACAAGGAGCAATGAGGGAAACTTGGGAAGAAGCAGGAGCCACTGTGG 650
Query 645 AAGTTATTTCACCTTTTGCTCAACTTGATATTCCTCTTATTGGCCAAACTTATGTTATAT 704
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 651 AAGTTATTTCACCTTTTGCGCAACTCGATATTCCTCTTATTGGCCAAACTTATGTTATAT 710
Query 705 TCTTAGCCAAACTGAAGAACCTGCATTTTGCACCTGGTCCTGAATCATTGGAGTGCCGTC 764
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 711 TCTTAGCCAAACTGAAGAACCTGCATTTCGCTCCTGGTCCTGAATCATTGGAGTGTCGTC 770
Query 765 TTTTTGCACTAGATGAGATACCGTTTGATTCCTTGGCTTTTTCATCTATATATGTTACCT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TTTTTGCACTAGATGAGATACCGTTTGATTCCTTGGCTTTTTCATCTATATATGTTACCT 830
Query 825 TAAATTTGTACTTGGAAGATCTGAAAAAAGGGAAACTAAAGTTTCACTATGGTACGATAA 884
||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||
Sbjct 831 TAAATTTGTACTTGGAAGACCTGAAAAAGGGGAAACTAAAGTATCACTATGGTACAATAA 890
Query 885 ATAAAAGGCCTGGAAGTAGTCCTTCAGATATTCGCGCCTTTAGTCTTGATTACCATCTGC 944
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 891 ATAAAAGGCCTGGAAGTAGTCCTTCAGATATTCGTGCCTTTAGTCTTGATTACCATCTGC 950
Query 945 AACCGTAACTCAAGTTTACAGAAGCAGCTTCTGGATTGGCTTTGTTCTTCCATGTCGAGT 1004
| |||| |||| |||||||||||||||||||||| || |||||||||| |||||||||||
Sbjct 951 AGCCGTGACTCGAGTTTACAGAAGCAGCTTCTGGTTTTGCTTTGTTCT-CCATGTCGAGT 1009
Query 1005 CTTTTCATTTCGCAACTCGATGTTACTAAAAGAAAAGGAATGATGAAGTTGCTTATGTGA 1064
||| ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||
Sbjct 1010 CTTGTCATTTCGCAACTCGTTGTTACGAAAAGAAAAGGAAAGATGAAGTTGCTTATGTGA 1069
Query 1065 GAGATTCCTTGGACAGATGAGAAAGAACTCGGAAGAAGATAATTTGGACAGAGTTTTGTT 1124
|||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||
Sbjct 1070 GAGATTCCTTGGACAGATGAGAAACAACACCAAAGAAGATAATTTGGACAGAGTTTCGTT 1129
Query 1125 CTGTATTTGTGGTGGAGAAATAGGTTTGGATGACTTTTAGGTCTCTCATGTCAGATTTTA 1184
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1130 TTGTATTTGTGGTGGAGAAATAGGTTTGGATGACTTTTAGGTAACTCATGTCAGATGTTA 1189
Query 1185 TGGCTGAACAATGTGTATCTTTATCTGTTTCTGGTTTCAGTTGCCTCAAATGTAAAAGGa 1244
|||||||||||||| |||||| |||| | ||||||||||||||||||||||| ||
Sbjct 1190 TGGCTGAACAATGT--ATCTTT-TCTG-----G-TTTCAGTTGCCTCAAATGTAAAATGA 1240
Query 1245 aaaaaaTCATATGTGGATGCAACA--TGTTGATCAATCTTTGTGTAATTAAGTCACCGTG 1302
|||| ||| |||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 1241 AAAAT-TCAGATGTGGATGCAACACATTTTGATCAATCTTTGTGTAATTAAGTCAC-GTG 1298
Query 1303 TTACTGTTACTTCAAGGTCTTCAGTGAAAGAAAGATAAACCAAATAGA 1350
||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 1299 TTACTGTTACTTCAAGGTCTTCAGTGAAAGAAAGAGAAATCAAAAAGA 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5