BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42080.1
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483293 jgi|Araly1|483293|fgenesh2_kg.4__2353__AT2G42080.1 1471 0.0
Ahg898751 jgi|Araly1|898751|Al_scaffold_0005_2717 263 2e-69
> Ahg483293 jgi|Araly1|483293|fgenesh2_kg.4__2353__AT2G42080.1
Length=960
Score = 1471 bits (796), Expect = 0.0
Identities = 910/962 (95%), Gaps = 19/962 (2%)
Strand=Plus/Plus
Query 12 TCCTCCGATCTCACAGAGATGAACGCCGCCATTAGAGCAGCGATTCTCCGACCACAAAGC 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCTCCGATCTCACAGAGATGAACGCCGCCATTAGAGCAGCGATTCTCCGACCACAAAGC 60
Query 72 TATTCTTCTCAGCTCAAAACCGCGTTTTTTCATTCAACTCCTGTCTTAGAACGCAAACGT 131
|||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 61 TATTCTTCTCAGCTCAAAGTCGCGTTATTTCATTCTACTCCTGTCTTAGAACGCAAACGT 120
Query 132 CGCACTTCCTGGGAATCGAAAGCAAATGTTCACAAGAAGAGGTTCAGAAGAATGAGGGAA 191
||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 121 CGCACTTCCTGGGAATCGAAATCAAATGTTCATAAGAAGAGATTCAGAAGAATGAGGGAA 180
Query 192 AAGCAAGAGTTATTGCGTAATGTCAATGCTTTTGCTGCAAACATGTTTACGAGCTGGCAT 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGCAAGAGTTATTGCGTAATGTCAATGCTTTTGCTGCAAACATGTTTACGAGCTGGCAT 240
Query 252 GATGAGTTTGATGACGATGGTCCCTCATCCCGGAAGCAAACCTCGTGGTTCAAAAAACAG 311
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GATGAGTTTGATGATGATGGTCCCTCCTCCCGGAAGCAAACCTCGTGGTTCAAAAAACAG 300
Query 312 TACTCCAAGGAACCCAAAGGAAACCAGAATAACAAACACGGCCCCTACACTTGGGGTAAA 371
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 301 TACTCCAAGGAACCCAAAGGAAACCAGAATAACAAACACGGTCCCTACAGTTGGGGTAAA 360
Query 372 AGGAATTTTGATTTTTGCGAAGTTGATGAGGACTTTGATGTCGACTATGTATTCCGAACT 431
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AGGAATTTCGATTTTTGCGAAGTTGATGAGGACTTTGACGTCGACTATGTATTCCGAACT 420
Query 432 GCTTTTGGAGGATCCCGAGGTTTCTCTTTTTCATTCACTCATGAAGAGGATGAACCTCGA 491
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 421 GCTTTTGGTGGATCCCGAGGTTTCTCTTTTTCATTCACCCATGAAGAGGATGAACCTCAA 480
Query 492 TGGCGGCATCACTCTTCAAGGTTTTCCAACAACTCTAACAGGTCTTGGAGATCGAAATAT 551
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 481 TGGCGGCATCACTCTTCAAGGTTTTCCAACAACTCTAAGAGGTCTTGGAGATCAAAATAT 540
Query 552 CGGTTAGATGAAGATGAAGAAGAAGAAGACTATACTTCAGACTCCAGTGACTCTGAGTCT 611
| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CAGTTAGATGAAGATGATGAAGAAGAAGACTATACTTCAGACTCCAGCGACTCTGAGTCT 600
Query 612 GAGCCAAACCAAGTTTCTCATAGACAAGCACTTGGCCTGAGTCCCTCAGGTCCCTTAAAC 671
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GAGCCAAACCAAGTTTCTCATAGACAAGCACTTGGCCTGAGTCCTTCAGGTCCCTTAAAC 660
Query 672 CTTAAAGATGTCAAACATGCGTATCGAACTTGTGCATTAAAATGGCATCCAGATCGTCAT 731
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 CTTAAAGATGTCAAACATGCGTATCGAACTTGTGCTTTAAAATGGCATCCAGATCGTCAT 720
Query 732 CAAGGCTCTACCAAGGAGGCGGCTGAAGCAAAGTTCAAGCTCTGCAGTGTGGCTTATCAA 791
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 CAAGGCTCCACCAAGGAGGCGGCTGAAGCAAAGTTCAAGCTCTGTAGTGTGGCTTATCAA 780
Query 792 TCTTTATGTGAAAAGCTATCTGTGAACTAAGA----G--TTAGATAGGTCTTGATTACTT 845
|||||||| ||||||||||| ||||||||||| | |||||||| ||||||| ||||
Sbjct 781 TCTTTATGCGAAAAGCTATCGGTGAACTAAGATAAAGAGTTAGATAGATCTTGATCACTT 840
Query 846 AGAGATACCTCATTACAATAATTTCCGAATTGTTTCATTTTG--GCTTTGT------TC- 896
|||||||||||||||||||||||||| |||||||||||||| |||| || ||
Sbjct 841 AGAGATACCTCATTACAATAATTTCCAAATTGTTTCATTTTTAAGCTTAGTAGAGGATCC 900
Query 897 AAGCAAAATTGCCTTTGTTCTGTC-TTTTTCTATTTCTTC-AAAATCTACTACTGATGTG 954
|||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||
Sbjct 901 AAGCAAAATTGCCTTTGTTCTGTCATTTTT-TATTTCTTTGAAAA-CTACTACTGATGTG 958
Query 955 TA 956
||
Sbjct 959 TA 960
> Ahg898751 jgi|Araly1|898751|Al_scaffold_0005_2717
Length=753
Score = 263 bits (142), Expect = 2e-69
Identities = 601/809 (74%), Gaps = 85/809 (11%)
Strand=Plus/Plus
Query 36 GCCGCCATTAGAGCAGCGATTCTCCGA-CCACAAAG-CTATTCTTCTCAGC-TCAAAACC 92
|||||||| |||||||||||||| | | |||| ||| ||||| |||| | | |||||||
Sbjct 7 GCCGCCATAAGAGCAGCGATTCT-CAAGCCAC-AAGACTATTGTTCTTA-CATCAAAACA 63
Query 93 GCGTTTTTT-CATTCAACTCCTGTCTTAGAACGCAAACGTCGCACTTCCTGGGAATCGAA 151
|| |||||| ||||| ||| || ||||| |||||||| || | | |||| ||
Sbjct 64 GC-TTTTTTCCATTCTACTTCTATCTTACAACGCAAA-----CA--T-C----AATCCAA 110
Query 152 AGCAAATGTTCACAAG-AAGAGGTTCAGAAGAATGAGGGAAAAGCAAGAGTTAT-TG-CG 208
|||| | || ||| || ||||| |||||| || || ||||||||| || | | ||
Sbjct 111 TTCAAAAGCTC-GAAGCAAAAGGTTGGGAAGAAAGAAGGCAAAGCAAGA-TT-TGCGTCG 167
Query 209 TAATGTCAATGCTTTTGCTGCAA-ACATGTTTACGAGCTGGCA-TGATGAGTTTGATGAC 266
|||||| ||||||||||| ||| || | || || ||| | ||||| | || |
Sbjct 168 TAATGTGAATGCTTTTGC-ACAACACTTATTCGGGATTTGG-AGTGATG-GGTT--T--- 219
Query 267 GATGGTCCCTCATCCCGG-AAGCAAACCTCGTGGTTCAAAAAACAGTACTCCA-AGGAAC 324
||| | ||| | || ||||| ||||||||||| | ||||| ||||| | || |
Sbjct 220 GAT--T-ACTC-T---GGTAAGCACACCTCGTGGTTTGAGAAACAATACTCTAGAGTTTC 272
Query 325 CCAAAGGAAACCAGAAT--AACAA-ACACGGCCC-CTACACTTGGGGTAAAAGGA-ATTT 379
| ||||| || | |||| | || |||| ||| | ||| || || ||||| || |||
Sbjct 273 CAAAAGG-AATCGGAATGGTAGAAGACACATCCCTCAACA-TTTGGATAAAA-GATGTTT 329
Query 380 TGATTTTTGCGAAGTTGATGA-GGACTTTGATGTCGA-CTA-TGTATTCCGAACTGCTTT 436
||||||| ||||||||||||| ||| | ||| | || | | | | || || ||||| ||
Sbjct 330 TGATTTTAGCGAAGTTGATGATGGA-TATGAAATTGAGC-ACT-TTTTGCGGACTGCATT 386
Query 437 TGGAGGATCCCGAGGTTTCTCTTTTTCATTCACTCATGAAGAGGATGAACCTCGATGGCG 496
|| ||||||||| ||||||||| ||| |||||||| || || | | || |
Sbjct 387 GGGTGGATCCCGACGTTTCTCTTGGTCAAACACTCATG--GA-GA-G------G--GG-G 433
Query 497 GCA-TCACTCTTCAAGGTTTTCCAACAACTCTA-ACAGGTCTTGGAGATCGAAATATCGG 554
| | || ||| |||| || | ||||| || | | |||||| | |||| ||||||
Sbjct 434 GAACTCGCTCAGGGAGGTACTCTAGCAACTTTAGA-AAATCTTGGGGTTCGAGATATCGA 492
Query 555 TTAGATGAAGATGAAGAAGAAGAAGACTATACTTCAGACTCCAGT-GACTCTGAGTCTGA 613
||||||||||| ||||||| | ||| ||| ||||| || | | || | || | ||
Sbjct 493 TTAGATGAAGAAGAAGAAG-ATAAG--TATTCTTCA-AC-AGAATCGA-GC-GACACAGA 545
Query 614 GCCAAACCAAGTTTCTCATAGACAAGCACTTGGCCTGAGTCCCTCAGGTCCCTTAAACCT 673
|||||||| | |||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 546 ACCAAACCAGGAGTCTCATAGACAAGCACTTGGTTTGAGTTCATCAGGTCCCTTAAACCT 605
Query 674 TAAAGATGTCAAACAT-GCGTATCGAACTTGTGCATTAAAATGGCATCCAGATCGTCATC 732
| ||||||||||| || || || ||| ||||||||||||||||||||||||||||||| |
Sbjct 606 TGAAGATGTCAAA-ATTGCATACCGAGCTTGTGCATTAAAATGGCATCCAGATCGTCACC 664
Query 733 AAGGCTCTACCAAGGAGGCGGCTGAAGCAAAGTTCAAGCTCTGCAGTGTGGCTTATCAAT 792
| | |||||||||| | | ||||| | ||||||||||||||||| |||||| |||||||
Sbjct 665 ACGCCTCTACCAAGAATGAAGCTGAGGAAAAGTTCAAGCTCTGCACTGTGGCATATCAAT 724
Query 793 CTTTATGTGAAAAGCTATCTGTGAACTAA 821
||||||| ||||||||| | ||||||||
Sbjct 725 CTTTATGCGAAAAGCTAGCCATGAACTAA 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36788614905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5