BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42090.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902192 jgi|Araly1|902192|Al_scaffold_0004_2842 1604 0.0
Ahg346008 jgi|Araly1|346008|fgenesh1_pg.C_scaffold_4002350 963 0.0
Ahg935069 jgi|Araly1|935069|scaffold_403057.1 887 0.0
> Ahg902192 jgi|Araly1|902192|Al_scaffold_0004_2842
Length=1098
Score = 1604 bits (868), Expect = 0.0
Identities = 1029/1106 (93%), Gaps = 13/1106 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCCTATCGTGTGTGACAAGGGACATGGAATGGTGCAGGCGGGATTTGCTGGAGAC 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGAAGCCTATCGTGTGTGACAAGGGACATGGAATGGTCCAGGCGGGATTTGCAGGAGAC 60
Query 61 GAAGCACCAAAGGTTGTGTTTCCATGTGTCGTGGGTCGTCCAAGAGATGGATTGAATCCG 120
|||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |||
Sbjct 61 GAAGCACCAAAGGTTGTGTTTCCATGCGTCGTGGGTCGTCCAAAAGATGGAATGAACCCG 120
Query 121 AACGAATCTTATGTGGGAGAA-GAAGGTCATGCCAACAGAGATATTCTCACACTTAAAGA 179
||||| |||||||||||| || |||| ||| ||||| ||||||||||| ||| | |
Sbjct 121 AACGATTCTTATGTGGGA-AACGAAGCTCAAGCCAAGAGAGATATTCTTACA--T----A 173
Query 180 CCCAATGGAGCATGGTATCGTTAACAATTGGGATGACATGGAGAAGATTTGGCACTATAC 239
|||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 174 CCCAATGGAGCATGGTATCGTTAAAAATTGGGATGACATGGAGAAGATTTGGTACCATAC 233
Query 240 TTTCTACAACGAGCTACGTGTGGATCCTGAAGAACACCCTGTACTTCTCACTGAAGCTCC 299
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 234 TTTCTACAACGAGCTACGTGTGGATCCTAAAGAACACCCTGTGCTTCTCACTGAAGCTCC 293
Query 300 TTATAACCCTAAAGCCAATCGTGAGAAAATGACTCAGATCATGTTTGAGAGCTTTGATGT 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTTTAACCCTAAAGCCAATCGTGAGAAAATGACTCAGATCATGTTTGAGAGCTTTGATGT 353
Query 360 TCCTGCTATGTACGTCTCCATGCAATCTGTTCTTTATCTCTATTCCAGTGGTCGTACCAC 419
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 354 TCCTGCCATGTACGTGTCCATTCAATCTGTTCTTTATCTCTATTCCAGTGGTCGTACCAC 413
Query 420 AGGTGTTGTGTTGGATTTAGGAGAGAGGGTGAGCCACACAGTTCCAGTATACGAAGGTTA 479
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 414 AGGTGTTGTGTTGGATTTAGGAGACAGAGTGAGCCACACAGTTCCAGTATACGAAGGTTA 473
Query 480 CGCACTCCCACACGGTATACTTCGTCTAGACCTTGGAGGCCGTGACCTAACTGACTACCT 539
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 474 CGCACTCCCACACGGTATACTGCGTCTGGACCTAGGAGGCCGTGACCTAACTGACTACCT 533
Query 540 CATAGAAATCATGACCGAACGTGGCTACACATACACCACATCCGCCGAGCGGGAAATAGT 599
||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 534 CATAGAAATCATGGCCGAACGTGGCTACACATACACCTCATCCGCCGAGCGTGAGATAGT 593
Query 600 CCGAGACATCAAAGAGAAGCTTTGTTACGTAGCACTCGACTACGAGCAAGAAATGGAGAA 659
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 594 CCGAGACATCAAAGAGAAGCTTTGTTACATAGCTCTCGACTACGAGCAAGAAATGGAGAA 653
Query 660 GACAACAAAGGGTTGGACAATCGATAAAACCTACGTGCTTCCCGATGGTCAAGAGATCAC 719
| |||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 654 GGCAACAAAGGGCTGGGCAATCGATAAAACCTACGAGCTTCCCGATGGTCAAGTGATCAC 713
Query 720 GATAGAAGCCGAGAGATT---CATGTGCCCCGAGGTTCTTTTCCAGCCGTCTGTGATCGG 776
| |||||||||||||||| ||||||||| ||||||||||||||||||||| || | ||
Sbjct 714 GCTAGAAGCCGAGAGATTGATCATGTGCCCTGAGGTTCTTTTCCAGCCGTCTTTGCTAGG 773
Query 777 AAAGGAATCTTCTGGTATTCACGAGGCGACTCGCAATTCCATCTTGAAGTGTCCTGTTGA 836
||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 774 AAAGGAATCTTGTGGTATTCACGAGGCTACTCGCAATTCGATCTTGAAGTGTCCAGTTGA 833
Query 837 TACGAGGAGGGATATGTATGGTAACATTTTGATGACTGGTGGCACGACGATGTTACATGG 896
||||||||||||| ||| ||||||||||||||||||||||||| | |||||||| |||||
Sbjct 834 TACGAGGAGGGATCTGTTTGGTAACATTTTGATGACTGGTGGCTCAACGATGTTCCATGG 893
Query 897 GATTAAAGAAAGAATGACCAAAGAGCTAAATGCACTTGTACCGTCGAGTATGAAAGTTAA 956
|||||||||||| |||||||||||| | | ||||||||||||||| ||||||||||||||
Sbjct 894 GATTAAAGAAAGGATGACCAAAGAGATCACTGCACTTGTACCGTCAAGTATGAAAGTTAA 953
Query 957 AGTTG-TAGTTCCTCCGGAAAGTGAGTGTAGTGTTTGGATTGGAGGCTCCATTTTGGCTT 1015
| ||| | ||||||| ||| ||| ||||||||||||||| |||||||||| |||||||||
Sbjct 954 AATTGAT-GTTCCTCTGGAGAGTAAGTGTAGTGTTTGGAGTGGAGGCTCCGTTTTGGCTT 1012
Query 1016 CTCTAAGCACCTTTCACCAGATGTGGATAACTAAGGATGAATATGAAGAACATGGAGCGG 1075
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CTCTAAGCACCTTTCATCAGATGTGGATAACTAAGGATGAATATGAAGAACATGGAGCGG 1072
Query 1076 CGATTGTTCACAGAAAATGCGTCTAA 1101
||||||||||||| |||||| |||||
Sbjct 1073 CGATTGTTCACAGTAAATGCTTCTAA 1098
> Ahg346008 jgi|Araly1|346008|fgenesh1_pg.C_scaffold_4002350
Length=1137
Score = 963 bits (521), Expect = 0.0
Identities = 933/1125 (83%), Gaps = 55/1125 (5%)
Strand=Plus/Plus
Query 6 GCCTATCGTGTGTGACAA-GGGACATGGAATGGTGC-AGGCGGGATTTGCTGGAGACGAA 63
|||||||||||||||||| || || ||||||||| | |||||||||| |||||||||||
Sbjct 27 GCCTATCGTGTGTGACAATGGAAC-TGGAATGGT-CAAGGCGGGATTCGCTGGAGACGAT 84
Query 64 GCACCAAAG-GTTGTGTTTCCATGTGTCGTGGGTCGT---C--CA-A---GA--GA---- 107
||||| ||| | | ||||||| | || ||||||||| | || | || ||
Sbjct 85 GCACC-AAGAGCTACGTTTCCAAGCGTTGTGGGTCGTCCACGACACAGGGGAGTGATGGT 143
Query 108 TGGATTGAATCCGAACGAATCTTATGTGGGAGAAGAAGGTCATGCCAACAGAGATATTCT 167
|||| ||||| ||| || || ||||||||||| |||| ||| |||| |||| ||||||
Sbjct 144 TGGAATGAATGAGAAGGATTCCTATGTGGGAGACGAAGCTCAAGCCAGGAGAGGTATTCT 203
Query 168 CACACTTAAAGACCCAATGGAGCATGGTATCGTTAACAATTGGGATGACATGGAGAAGAT 227
||||||||| ||||||| ||||| ||| | |||| ||||||||||||||||||||||||
Sbjct 204 TACACTTAAATACCCAATCGAGCACGGTGTTGTTAGCAATTGGGATGACATGGAGAAGAT 263
Query 228 TTGGCACTATACTTTCTACAACGAGCTACGTGTGGATCCTGAAGAACACCCTGTACTTCT 287
||||||| ||||||| ||||| ||||| ||| |||||||||||||||||||| | |||||
Sbjct 264 TTGGCACCATACTTTTTACAATGAGCTGCGTTTGGATCCTGAAGAACACCCTATTCTTCT 323
Query 288 CACTGAAGCTCCT-TATAACCCTAAA-GCCAATCGTGAGAAA-ATGACTCAGATCATGTT 344
||||||||||||| | |||||| ||| ||||||||||| ||| |||||||||||||||||
Sbjct 324 CACTGAAGCTCCTCT-TAACCC-AAAGGCCAATCGTGA-AAAGATGACTCAGATCATGTT 380
Query 345 TGAGAGC-TTTGATGTTCCT-GCTATGTACGTCT-CCATGCAATCTGTTCTTTATCTCTA 401
||||| | |||| | ||||| | |||||| | | || || | ||||| | ||| ||
Sbjct 381 TGAGA-CTTTTGCTTTTCCTAG-TATGTATAT-TGGTATTCAGGCCGTTCTCTCTCTATA 437
Query 402 TTCCAGTGGTCGTACCACAGGTGTTGTGTTGGATTTAGGAGAGAGG-GTGAGCCACACAG 460
|||||||||||||||||||||| |||||||||||| |||||| || ||||||||||| |
Sbjct 438 TTCCAGTGGTCGTACCACAGGTATTGTGTTGGATTCAGGAGA-TGGTGTGAGCCACACTG 496
Query 461 TTCCAGTATACGAAGGTTACGCACTCCCACACG-GTATACTT-CGTCTAGACCTTGGAGG 518
||||| | ||||||||||| ||||||||||| | | || ||| |||||||| || | |||
Sbjct 497 TTCCAATCTACGAAGGTTATGCACTCCCACATGCG-AT-CTTGCGTCTAGATCTAGCAGG 554
Query 519 CCGTGACCTAACTGACTACCTCATAG-AAATCATGACCGAACGTGGCTACACATACACCA 577
|||||||||||| || || |||| | ||||||||| ||||||||||||||||||||||
Sbjct 555 CCGTGACCTAACCGAGTATCTCA-CGAAAATCATGATGGAACGTGGCTACACATACACCA 613
Query 578 CATCCGCCGAGCGGGAAATAGTCCGAGACATCAAAGAGAAGCTTTGTTACGTAGCACTCG 637
||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||
Sbjct 614 CATCCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTTTGTTACATAGCTGTCG 673
Query 638 ACTACGAGCAAGAAATGGAGAAGACAACAAAGGGTT-GGACAATCGATAAA-ACCTACGT 695
||||||||||||||||| |||| | |||| | | | || ||||||||||| | ||||
Sbjct 674 ACTACGAGCAAGAAATGTTGAAGGCTACAACGAGCTCGG-CAATCGATAAAGAA-TACGA 731
Query 696 GCTTCCCGATGGTCAAGAGATCACGATAG-AAGCCGAGAGATTCATGTGCCCCGAGGTTC 754
||||||||||||||||| ||||||||||| || | |||||||||| |||||| |||||||
Sbjct 732 GCTTCCCGATGGTCAAGTGATCACGATAGGAA-CTGAGAGATTCAGGTGCCCGGAGGTTC 790
Query 755 TTTTCCAGCCGTCTGTGATCGGAAAGGAATCTTCTGGTATTCACGAGGCGAC-TCGCAAT 813
|||||||||||||| |||| |||| |||| ||| ||||||||| ||| |||| | ||||
Sbjct 791 TTTTCCAGCCGTCTTTGATTGGAATGGAAACTTGTGGTATTCATGAGACGACGTA-CAAT 849
Query 814 TCCATCTTGAAGTGTCCTGTTGATACGAGGAGGGATATGTATGGTAACATTTTGATGACT 873
|| ||| |||||||| |||||||| |||| |||| ||||||| |||||| || ||| |
Sbjct 850 TCGATCATGAAGTGTGATGTTGATATAAGGAAGGATTTGTATGGAAACATTGTGTTGAGT 909
Query 874 GGTGGCACGACGATGTTACATGGGATTAAAGAAAGAATGACCAAAGAGCTAAATGCACTT 933
||||||||||| | ||| | |||||| ||| || |||| ||||||| | ||||| |||
Sbjct 910 GGTGGCACGACCACGTTCCCTGGGATCGCAGATAGGATGAACAAAGAGATCAATGCGCTT 969
Query 934 GTACCGTCGAGTATGAA-AGTTAAAGTTGTAGTTCCTCCGGAAAGTGAG-TGTAGTGTTT 991
| |||| | |||||||| | ||||| |||| | ||| ||||| || || | ||||||||
Sbjct 970 GCACCGCCTAGTATGAAGA-TTAAAATTGTGGCTCCCCCGGAGAG-GAAATATAGTGTTT 1027
Query 992 GGATTGGAGGCTCCATTTTGGCTTCTCTAAGCACCTTT-CACCAGATGTGGATAACTAAG 1050
|| | |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct 1028 GGGTGGGAGGCTCCATTTTGGCTTCTCTAAGCAGCTTTGCAC-AGATGTGGATAACTAAA 1086
Query 1051 GATGAATATGAAGAACATGGAGCGGCGATTGTTCACAGAAAATGC 1095
| ||| ||||| ||| ||||| || ||||||||||||| ||||||
Sbjct 1087 GCTGATTATGATGAAAATGGACCGTCGATTGTTCACAGGAAATGC 1131
> Ahg935069 jgi|Araly1|935069|scaffold_403057.1
Length=1150
Score = 887 bits (480), Expect = 0.0
Identities = 922/1126 (82%), Gaps = 67/1126 (6%)
Strand=Plus/Plus
Query 5 AGCCTATCGTGTGTGACAA-GGGACATGGAATGGTGC-AGGCGGGATTTGCTGGAGACGA 62
||||||||||||||||||| || || ||||||| | | |||||||||| |||||||| ||
Sbjct 28 AGCCTATCGTGTGTGACAACGGAAC-TGGAATGAT-CAAGGCGGGATTAGCTGGAGATGA 85
Query 63 AGCACCAAAGGTTGTGTTTCCATGTGTCGTGGGTCGTCCAAG-----AGA---TG--GAT 112
|||||||||| | |||||||| | || ||||||||||||| ||| || | |
Sbjct 86 TGCACCAAAGGCTATGTTTCCAAGCATCATGGGTCGTCCAAGACACAAGAGGGTGATGCT 145
Query 113 T-G-A---ATCCGAACGAATCTTATGTGGGAGAAGAAGGTCATGCCAACAGAGATATTCT 167
| | | ||| ||| |||| |||||||||||| |||| ||| ||||| |||| ||||||
Sbjct 146 TGGAATGGATCAGAAAGAATTTTATGTGGGAGACGAAGCTCAAGCCAAGAGAGGTATTCT 205
Query 168 CACACTTAAAGACCCAATGGAGCATGGTATCGTTAACAATTGGGATGACATGGAGAAGAT 227
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 TACACTTAAATACCCAATGGAGCATGGTATCGTTAACAATTGGGATGACATGGAGAAGAT 265
Query 228 TTGGCA-CTATACTTTCTACAACGAGCTACGTGTGGATCCTGAAGAACACCCTGTACTTC 286
|||||| | |||||||| |||||||||||||||||| |||| ||||||||||||| ||||
Sbjct 266 TTGGCATC-ATACTTTCCACAACGAGCTACGTGTGGCTCCTCAAGAACACCCTGTGCTTC 324
Query 287 TCACTGAAGCTCCT-TATAACCCTAAAGCCAATCGTGAGAAAATGACTCAGATCATGTTT 345
||||||| ||||| || |||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 325 TCACTGACTCTCCTCTA-AACCCTAAGGCCAATCGTGAGAAGATGGCTCAGATCATGTTT 383
Query 346 GAGAGCTTTGATGTTCCTGCTATGTACGTCTCCATGCAATCTGTTCTTTATCTCTATTCC 405
|||| ||| || |||||||| |||||| || | || | ||||| ||||||| |
Sbjct 384 GAGACCTTCAATACTCCTGCTACGTACGTGGCCGTTCAGGCCGTTCTCGCTCTCTATGCT 443
Query 406 AGTGGTCGTACCACAGGTGTTGTGTTGGATTTAGGAGAGAGG-GTGAGCCACACAGTTCC 464
|||||||||||| ||||| ||||||| |||| |||||| || |||||||||| ||||||
Sbjct 444 AGTGGTCGTACCTCAGGTATTGTGTTAGATTCAGGAGAT-GGTGTGAGCCACATAGTTCC 502
Query 465 AGTATACGAAGGTTACGCACTCCCACACG-GTAT-ACTTCGTCTAGACCTTGG-AGGCCG 521
| | ||| | |||||| |||||||||| | | || | | ||||||||| || | ||||||
Sbjct 503 AATCTACCATGGTTACACACTCCCACATGCG-ATTA-TGCGTCTAGAC-TTAGCAGGCCG 559
Query 522 TGACCTAACTGACTACCTCATAGAA-ATCATGACCGAACGTGGCTACACATACACCACAT 580
||||||||| ||||||||||| ||| || |||| ||||||||||||||||| |||||||
Sbjct 560 TGACCTAACCGACTACCTCAT-GAATATTATGATGGAACGTGGCTACACATATACCACAT 618
Query 581 CCGCCGAGCGGGAAATAGTCCGAGACATCAAAGAGAAGCTT-TGTTACGTAGCACTCGAC 639
| || |||||||| || |||||||||||||||||||| || ||||| ||||| ||||||
Sbjct 619 CAGCGGAGCGGGAGATCGTCCGAGACATCAAAGAGAAA-TTATGTTATGTAGCTCTCGAC 677
Query 640 TACGAGCAAGAAATGGAGAA-GACAACAAAGGGTTGGACAATCGATAAAACCTACGTGCT 698
|||||||||||| ||||||| | | |||| || | | |||||||||| |||
Sbjct 678 TACGAGCAAGAACTGGAGAACG-CTACAA---------CA-T--ACAAAACCTACGAGCT 724
Query 699 TCCCGATGGTCAAGAGATCACGA-TAGAAGCCGAGAG-ATTCATGTGCCCCGAGGTTCTT 756
|||||||||||||| |||||| | ||| |||||||| || || |||||| |||||||||
Sbjct 725 TCCCGATGGTCAAGTGATCAC-ACTAGGTGCCGAGAGGAT-CAGGTGCCCTGAGGTTCTT 782
Query 757 TTCCAGCCGTCTGTGATCGGAAAGGAATCTTCTGGTATTCACGAGGCGACTCGCAATTCC 816
|||||||||||| || |||| | |||||||||||||||||| ||| |||| ||| ||
Sbjct 783 TTCCAGCCGTCTTTGGTCGGGATGGAATCTTCTGGTATTCATGAGATGACTTACAAGTCG 842
Query 817 ATCT-TGAAGTGTCCTGTTGATACGAGGAGGGATATGTATGGTAACATTTTGATGACTGG 875
|| | |||||||| |||||||| |||| ||| ||||||| |||||| | |||| |||
Sbjct 843 AT-TATGAAGTGTGATGTTGATATAAGGAAAGATTTGTATGGAAACATTGTCATGAGTGG 901
Query 876 TGGCACGACGATGTTACATGGGATTAAAGAA-AGAATGACCAAAGAGCTAAATGCACTTG 934
|||||| |||||||| | |||||| | | || ||| ||||||| | | ||| ||||
Sbjct 902 TGGCACAACGATGTTCCCTGGGATCGC-GCAGAGGATGTGCAAAGAGATCAGTGCGCTTG 960
Query 935 TACC-GTCGAGTATGAA-AGTTAAAGTTGT-AGTTCCTCCGGAAAGTGAGTGTAGTGTTT 991
||| | | | |||||| | |||||||||| | ||||||||| || ||| ||||| ||
Sbjct 961 CACCAG-CTAATATGAAGA-TTAAAGTTGTGA-TTCCTCCGGGGAGAAAGTATAGTGCTT 1017
Query 992 GGATTGGAGGCTCCATTTTGGCTTCTCTAAGCACCTTTCACCAGATGTGGATAACTAAGG 1051
||||||||||||||||||||||||||||||| ||||| | || | ||||||||||||||
Sbjct 1018 GGATTGGAGGCTCCATTTTGGCTTCTCTAAGTTCCTTTGAACAAAAGTGGATAACTAAGG 1077
Query 1052 ATGAATATGAAGAA-CATGGAGCGGCGATTGTTCACA-GAAAATGC 1095
||| ||||||||| | |||||||||||||||||||| |||| |||
Sbjct 1078 CTGAGTATGAAGAAAC-TGGAGCGGCGATTGTTCACAAGAAA-TGC 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5