BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42100.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346008 jgi|Araly1|346008|fgenesh1_pg.C_scaffold_4002350 1790 0.0
Ahg935069 jgi|Araly1|935069|scaffold_403057.1 1099 0.0
Ahg902192 jgi|Araly1|902192|Al_scaffold_0004_2842 946 0.0
> Ahg346008 jgi|Araly1|346008|fgenesh1_pg.C_scaffold_4002350
Length=1137
Score = 1790 bits (969), Expect = 0.0
Identities = 1086/1142 (95%), Gaps = 10/1142 (1%)
Strand=Plus/Plus
Query 1 ATGTCGGATCTAG-GTGACGAATCCGTGGCTATCGTGTGTGACAATGGAACTGGAATGGT 59
||| ||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGATCTAGAG-GACGAATTCGTGCCTATCGTGTGTGACAATGGAACTGGAATGGT 59
Query 60 CAAGGCGGGATTCGCTGGAGACGATGCACCAAGAGCTGTGTTTCCAAGCGTTGTGGGTCG 119
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 CAAGGCGGGATTCGCTGGAGACGATGCACCAAGAGCTACGTTTCCAAGCGTTGTGGGTCG 119
Query 120 TCCACGACACAGGGGAGTGATGGTAGGAATGGATGAGAAGGATACCTTTGTGGGAGACGA 179
|||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||
Sbjct 120 TCCACGACACAGGGGAGTGATGGTTGGAATGAATGAGAAGGATTCCTATGTGGGAGACGA 179
Query 180 AGCTCAAGCCAGGAGAGGTATTCTTTCACTTAAATACCCAATCGAACACGGTGTTGTTAG 239
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 180 AGCTCAAGCCAGGAGAGGTATTCTTACACTTAAATACCCAATCGAGCACGGTGTTGTTAG 239
Query 240 CAATTGGGATGACATGGAGAAGATTTGGCACCATACTTTTTACAATGAGCTGCGTTTGGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAATTGGGATGACATGGAGAAGATTTGGCACCATACTTTTTACAATGAGCTGCGTTTGGA 299
Query 300 ACCTGAAGAACACCCTATTCTTCTCACTGAAGCTCCTCTTAACCCAAAGGTCAATCGTGA 359
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 TCCTGAAGAACACCCTATTCTTCTCACTGAAGCTCCTCTTAACCCAAAGGCCAATCGTGA 359
Query 360 AAAGATGACTCAGATCATGTTTGAGTCATTTGCTTTTCCTAGTATGTATATTGGTATTCA 419
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 360 AAAGATGACTCAGATCATGTTTGAGACTTTTGCTTTTCCTAGTATGTATATTGGTATTCA 419
Query 420 GGCCGTTCTCTCTCTCTATTCCAGTGGTCGTACCACAGGTATTGTGTTGGATTCAGGAGA 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGCCGTTCTCTCTCTATATTCCAGTGGTCGTACCACAGGTATTGTGTTGGATTCAGGAGA 479
Query 480 TGGTGTGAGCCACACAGTTCCAATCTACGAAGGTTATGCACTCCCGCATGCGATCTTGCG 539
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TGGTGTGAGCCACACTGTTCCAATCTACGAAGGTTATGCACTCCCACATGCGATCTTGCG 539
Query 540 TCTAGATCTAGCAGGCCGTGACCTAACCGAGTATCTGACGAAAATCATGATGGAACGTGG 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 TCTAGATCTAGCAGGCCGTGACCTAACCGAGTATCTCACGAAAATCATGATGGAACGTGG 599
Query 600 CTACACATACACCACATCCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTTTG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTACACATACACCACATCCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTTTG 659
Query 660 TTACATAGCTGTTGACTACGAGCAAGAAATGGAGAAGGCTACAACGAGCTCGGCAATCGA 719
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 TTACATAGCTGTCGACTACGAGCAAGAAATGTTGAAGGCTACAACGAGCTCGGCAATCGA 719
Query 720 TA--GAACCTACGAGCTTCCGGATGGTCAAGTGATCACGATAGGAGCTGAGAGATTCAGG 777
|| ||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TAAAGAA--TACGAGCTTCCCGATGGTCAAGTGATCACGATAGGAACTGAGAGATTCAGG 777
Query 778 TGCCCTGAGGTTCTTTTCCAGACGTCTTTGATTGGCATGGAAACTTCTGGTATTCATGAG 837
||||| ||||||||||||||| ||||||||||||| |||||||||| |||||||||||||
Sbjct 778 TGCCCGGAGGTTCTTTTCCAGCCGTCTTTGATTGGAATGGAAACTTGTGGTATTCATGAG 837
Query 838 ACGACTTACAATTCGATCATGAAGTGTGATGTGGATATAAGGAAGGATTTGTATGGAAAC 897
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 ACGACGTACAATTCGATCATGAAGTGTGATGTTGATATAAGGAAGGATTTGTATGGAAAC 897
Query 898 ATTGTGTTGAGTGGTGGCACGACGATGTTCCCGGGGATTGCAGATAGGATGAACAAAGAG 957
||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||||
Sbjct 898 ATTGTGTTGAGTGGTGGCACGACCACGTTCCCTGGGATCGCAGATAGGATGAACAAAGAG 957
Query 958 ATCAATGCGCTTGCACCGCCTAGTATGAAGAT-AAAAGTTGTGGCTCCTCCCGAA-AGGA 1015
|||||||||||||||||||||||||||||||| |||| |||||||||| |||| | ||||
Sbjct 958 ATCAATGCGCTTGCACCGCCTAGTATGAAGATTAAAA-TTGTGGCTCC-CCCGGAGAGGA 1015
Query 1016 AATATAGTGTTTGGGTTGGAGGCTCCATTCTGGCTTCTCTAAGCAGCTTTGCACCGATGT 1075
|||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1016 AATATAGTGTTTGGGTGGGAGGCTCCATTTTGGCTTCTCTAAGCAGCTTTGCACAGATGT 1075
Query 1076 GGATTACTAAAGCTGAGTATGACGAACAGGGAGGGGCGATTGTTCACAGGAAATGCTTTT 1135
|||| ||||||||||| ||||| ||| | ||| | ||||||||||||||||||||||||
Sbjct 1076 GGATAACTAAAGCTGATTATGATGAAAATGGACCGTCGATTGTTCACAGGAAATGCTTTT 1135
Query 1136 AA 1137
||
Sbjct 1136 AA 1137
> Ahg935069 jgi|Araly1|935069|scaffold_403057.1
Length=1150
Score = 1099 bits (595), Expect = 0.0
Identities = 951/1119 (85%), Gaps = 40/1119 (4%)
Strand=Plus/Plus
Query 29 CTATCGTGTGTGACAATGGAACTGGAATGGTCAAGGCGGGATTCGCTGGAGACGATGCAC 88
|||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 31 CTATCGTGTGTGACAACGGAACTGGAATGATCAAGGCGGGATTAGCTGGAGATGATGCAC 90
Query 89 C-AAGAGCTGTGTTTCCAAGCGTTGTGGGTCGTCCACGACAC-AGGGGAGTGATGGTAGG 146
| ||| ||| ||||||||||| | ||||||||||| ||||| || || |||||| | ||
Sbjct 91 CAAAG-GCTATGTTTCCAAGCATCATGGGTCGTCCAAGACACAAGAGG-GTGATGCTTGG 148
Query 147 AATGGATGAGAAGGATACCTT-TGTGGGAGACGAAGCTCAAGCCAGGAGAGGTATTCTTT 205
||||||| |||| || | || ||||||||||||||||||||||| |||||||||||||
Sbjct 149 AATGGATCAGAAAGA-ATTTTATGTGGGAGACGAAGCTCAAGCCAAGAGAGGTATTCTTA 207
Query 206 CACTTAAATACCCAATCGAACACGGTGTTGTTAGCAATTGGGATGACATGGAGAAGATTT 265
|||||||||||||||| || || ||| | |||| ||||||||||||||||||||||||||
Sbjct 208 CACTTAAATACCCAATGGAGCATGGTATCGTTAACAATTGGGATGACATGGAGAAGATTT 267
Query 266 GGCACCATACTTTTTACAATGAGCTGCGTTTGGAACCTGAAGAACACCCTATTCTTCTCA 325
|||| |||||||| |||| ||||| ||| ||| ||| ||||||||||| | |||||||
Sbjct 268 GGCATCATACTTTCCACAACGAGCTACGTGTGGCTCCTCAAGAACACCCTGTGCTTCTCA 327
Query 326 CTGAAGCTCCTCTTAACCCAAAGGTCAATCGTGAAAAGATGACTCAGATCATGTTTGAGT 385
|||| ||||||| ||||| |||| ||||||||| |||||| |||||||||||||||||
Sbjct 328 CTGACTCTCCTCTAAACCCTAAGGCCAATCGTGAGAAGATGGCTCAGATCATGTTTGAGA 387
Query 386 CATTTGCTTTTCCTAG-TATGTATATTGGTA-TTCAGGCCGTTCTCTCTCTCTATTCCAG 443
| || | |||| | || ||| | || |||||||||||||| |||||||| | ||
Sbjct 388 CCTTCAATACTCCT-GCTACGTACGT-GGCCGTTCAGGCCGTTCTCGCTCTCTATGCTAG 445
Query 444 TGGTCGTACCACAGGTATTGTGTTGGATTCAGGAGATGGTGTGAGCCACACAGTTCCAAT 503
|||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 446 TGGTCGTACCTCAGGTATTGTGTTAGATTCAGGAGATGGTGTGAGCCACATAGTTCCAAT 505
Query 504 CTACGAAGGTTATGCACTCCCGCATGCGATCT-TGCGTCTAGATCT-AGCAGGCCGTGAC 561
|||| | ||||| ||||||| |||||||| | |||||||||| || |||||||||||||
Sbjct 506 CTACCATGGTTACACACTCCCACATGCGAT-TATGCGTCTAGA-CTTAGCAGGCCGTGAC 563
Query 562 CTAACCGAGTATCTGACGAAAATCATGATGGAACGTGGCTACACATACACCACATCCGCC 621
|||||||| || || | ||| || ||||||||||||||||||||||| |||||||| ||
Sbjct 564 CTAACCGACTACCTCATGAATATTATGATGGAACGTGGCTACACATATACCACATCAGCG 623
Query 622 GAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTT-TGTTACATAGCTGTTGACTACGA 680
||||| ||||| |||||||||||||||||||| || ||||| ||||| | ||||||||
Sbjct 624 GAGCGGGAGATCGTCCGAGACATCAAAGAGAAA-TTATGTTATGTAGCTCTCGACTACGA 682
Query 681 GCAAGAAATGGAGAAGGCTACAACGAGCTCGGCAATCGATAGAACCTACGAGCTTCCGGA 740
||||||| ||||||| |||||||| | | | | | | ||||||||||||||| ||
Sbjct 683 GCAAGAACTGGAGAACGCTACAAC-A--T----A--C-A-A-AACCTACGAGCTTCCCGA 730
Query 741 TGGTCAAGTGATCACGA-TAGGAGCTGAGAG-ATTCAGGTGCCCTGAGGTTCTTTTCCAG 798
||||||||||||||| | |||| || ||||| || |||||||||||||||||||||||||
Sbjct 731 TGGTCAAGTGATCAC-ACTAGGTGCCGAGAGGAT-CAGGTGCCCTGAGGTTCTTTTCCAG 788
Query 799 ACGTCTTTGATTGGCATGGAAACTTCTGGTATTCATGAGACGACTTACAATTCGATCATG 858
|||||||| | || |||||| |||||||||||||||||| ||||||||| ||||| |||
Sbjct 789 CCGTCTTTGGTCGGGATGGAATCTTCTGGTATTCATGAGATGACTTACAAGTCGATTATG 848
Query 859 AAGTGTGATGTGGATATAAGGAAGGATTTGTATGGAAACATTGTGTTGAGTGGTGGCACG 918
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 849 AAGTGTGATGTTGATATAAGGAAAGATTTGTATGGAAACATTGTCATGAGTGGTGGCACA 908
Query 919 ACGATGTTCCCGGGGATTGCAG-ATAGGATGAACAAAGAGATCAATGCGCTTGCACC-GC 976
||||||||||| ||||| || | | |||||| ||||||||||| |||||||||||| ||
Sbjct 909 ACGATGTTCCCTGGGATCGC-GCAGAGGATGTGCAAAGAGATCAGTGCGCTTGCACCAGC 967
Query 977 CTAGTATGAAGATAAAAGTTGTGGCTCCTCCCGAAAGGAAA-TATAGTGTTTGGGTTGGA 1035
|| ||||||||| ||||||||| |||||| | || ||| ||||||| |||| |||||
Sbjct 968 -TAATATGAAGATTAAAGTTGTGATTCCTCCGGGGAG-AAAGTATAGTGCTTGGATTGGA 1025
Query 1036 GGCTCCATTCTGGCTTCTCTAAGCAGCTTTGCACCGATGTGGATTACTAAAGCTGAGTAT 1095
||||||||| ||||||||||||| ||||| || | |||||| ||||| |||||||||
Sbjct 1026 GGCTCCATTTTGGCTTCTCTAAGTTCCTTTGAACAAAAGTGGATAACTAAGGCTGAGTAT 1085
Query 1096 GACGAA-CAGGGAGGGGCGATTGTTCACAGGAAATGCTT 1133
|| ||| | || || |||||||||||||| |||||||||
Sbjct 1086 GAAGAAACTGG-AGCGGCGATTGTTCACAAGAAATGCTT 1123
> Ahg902192 jgi|Araly1|902192|Al_scaffold_0004_2842
Length=1098
Score = 946 bits (512), Expect = 0.0
Identities = 933/1129 (83%), Gaps = 58/1129 (5%)
Strand=Plus/Plus
Query 29 CTATCGTGTGTGACAATGGAAC-TGGAATGGTCAAGGCGGGATTCGCTGGAGACGATGCA 87
|||||||||||||||| || || |||||||||| |||||||||| || |||||||| |||
Sbjct 8 CTATCGTGTGTGACAA-GGGACATGGAATGGTCCAGGCGGGATTTGCAGGAGACGAAGCA 66
Query 88 CC-AAGAGCTGTGTTTCCAAGCGTTGTGGGTCGTCCACGACACAGGGGAGTGATGGTAGG 146
|| ||| | |||||||||| |||| ||||||||| | | | | | | || | ||
Sbjct 67 CCAAAG-GTTGTGTTTCCATGCGTCGTGGGTCGT-C-C-A-A-A----A--GA---T-GG 110
Query 147 AATGGATGAGAAGGATACCTT-TGTGGGAGACGAAGCTCAAGCCAGGAGAGGTATTCTTT 205
|||| | ||| ||| ||| ||||||| ||||||||||||||| ||||| ||||| ||
Sbjct 111 AATGAACCCGAACGAT-TCTTATGTGGGAAACGAAGCTCAAGCCAAGAGAGATATTC-TT 168
Query 206 CACTTAAATACCCAATCGAACACGGTGTTGTTAGCAATTGGGATGACATGGAGAAGATTT 265
|| ||||||||| || || ||| | |||| |||||||||||||||||||||||||
Sbjct 169 -AC----ATACCCAATGGAGCATGGTATCGTTAAAAATTGGGATGACATGGAGAAGATTT 223
Query 266 GGCACCATACTTTTTACAATGAGCTGCGTTTGGAACCTGAAGAACACCCTATTCTTCTCA 325
|| |||||||||| ||||| ||||| ||| |||| ||| ||||||||||| | |||||||
Sbjct 224 GGTACCATACTTTCTACAACGAGCTACGTGTGGATCCTAAAGAACACCCTGTGCTTCTCA 283
Query 326 CTGAAGCTCCTCTTAACCC-AAAGGTCAATCGTGA-AAAGATGACTCAGATCATGTTTGA 383
||||||||||| ||||||| ||| | ||||||||| ||| ||||||||||||||||||||
Sbjct 284 CTGAAGCTCCTTTTAACCCTAAA-GCCAATCGTGAGAAA-ATGACTCAGATCATGTTTGA 341
Query 384 G-TCATTTGCTTTTCCTAG-TATGTATATTGGT--ATTCAGGCCGTTCTCTCTCTCTATT 439
| | |||| | ||||| | ||||| | || ||||| | ||||| | ||||||||
Sbjct 342 GAGC-TTTGATGTTCCT-GCCATGTA-CGT-GTCCATTCAATCTGTTCTTTATCTCTATT 397
Query 440 CCAGTGGTCGTACCACAGGTATTGTGTTGGATTCAGGAGATGGTGTGAGCCACACAGTTC 499
|||||||||||||||||||| |||||||||||| |||||| | ||||||||||||||||
Sbjct 398 CCAGTGGTCGTACCACAGGTGTTGTGTTGGATTTAGGAGACAGAGTGAGCCACACAGTTC 457
Query 500 CAATCTACGAAGGTTATGCACTCCCGCATGCG-AT-CTTGCGTCTAGATCTAGCAGGCCG 557
|| | ||||||||||| |||||||| || | | || | ||||||| || |||| ||||||
Sbjct 458 CAGTATACGAAGGTTACGCACTCCCACACG-GTATAC-TGCGTCTGGACCTAGGAGGCCG 515
Query 558 TGACCTAACCGAGTATCTGACGA-AAATCATGATGGAACGTGGCTACACATACACCACAT 616
||||||||| || || || | | |||||||| ||||||||||||||||||||| |||
Sbjct 516 TGACCTAACTGACTACCTCA-TAGAAATCATGGCCGAACGTGGCTACACATACACCTCAT 574
Query 617 CCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTTTGTTACATAGCTGTTGACT 676
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 575 CCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTTTGTTACATAGCTCTCGACT 634
Query 677 ACGAGCAAGAAATGGAGAAGGCTACAACGAGCTCGGCAATCGATAGAACCTACGAGCTTC 736
|||||||||||||||||||||| |||| | ||| ||||||||||| ||||||||||||||
Sbjct 635 ACGAGCAAGAAATGGAGAAGGCAACAAAGGGCTGGGCAATCGATAAAACCTACGAGCTTC 694
Query 737 CGGATGGTCAAGTGATCACGATAGGAGCTGAGAGATT---CAGGTGCCCTGAGGTTCTTT 793
| |||||||||||||||||| ||| ||| |||||||| || |||||||||||||||||
Sbjct 695 CCGATGGTCAAGTGATCACGCTAGAAGCCGAGAGATTGATCATGTGCCCTGAGGTTCTTT 754
Query 794 TCCAGACGTCTTTGATTGGCATGGAAACTTCTGGTATTCATGAGACGACTTACAATTCGA 853
||||| |||||||| | || | |||| ||| ||||||||| ||| | ||| ||||||||
Sbjct 755 TCCAGCCGTCTTTGCTAGGAAAGGAATCTTGTGGTATTCACGAGGCTACTCGCAATTCGA 814
Query 854 TCATGAAGTGTG-ATGTGGATATAAGGAAGGATTTGTATGGAAACATTGTGTTGAGTGGT 912
|| |||||||| | || |||| |||| |||| ||| ||| |||||| || ||| ||||
Sbjct 815 TCTTGAAGTGTCCA-GTTGATACGAGGAGGGATCTGTTTGGTAACATTTTGATGACTGGT 873
Query 913 GGCACGACGATGTTCCCGGGGATTGCAGATAGGATGAACAAAGAGATCAATGCGCTTGCA 972
||| | |||||||||| |||||| ||| ||||||| ||||||||||| ||| |||| |
Sbjct 874 GGCTCAACGATGTTCCATGGGATTAAAGAAAGGATGACCAAAGAGATCACTGCACTTGTA 933
Query 973 CCGCCTAGTATGAA-GATAAAAGTTG-TGGCTCCTCCCGAAAGGAAATATAGTGTTTGG- 1029
||| | |||||||| | ||||| ||| || ||||| || || || | ||||||||||
Sbjct 934 CCGTCAAGTATGAAAGTTAAAA-TTGATGT-TCCTCTGGAGAGTAAGTGTAGTGTTTGGA 991
Query 1030 GTTGGAGGCTCCATTCTGGCTTCTCTAAGCAGCTTTGCACC-GATGTGGATTACTAAAGC 1088
|| ||||||||| || ||||||||||||||| |||| || | ||||||||| ||||| |
Sbjct 992 GT-GGAGGCTCCGTTTTGGCTTCTCTAAGCACCTTT-CATCAGATGTGGATAACTAAGGA 1049
Query 1089 TGAGTATGACGAACAGGGAGGGGCGATTGTTCACAGGAAATGCTTTTAA 1137
||| ||||| ||||| |||| ||||||||||||||| |||||||| |||
Sbjct 1050 TGAATATGAAGAACATGGAGCGGCGATTGTTCACAGTAAATGCTTCTAA 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5