BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G42110.1

Length=497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483297 jgi|Araly1|483297|fgenesh2_kg.4__2357__AT2G42110.1         732    0.0  


> Ahg483297 jgi|Araly1|483297|fgenesh2_kg.4__2357__AT2G42110.1
Length=476

 Score =  732 bits (396),  Expect = 0.0
 Identities = 454/481 (94%), Gaps = 7/481 (1%)
 Strand=Plus/Plus

Query  2    ATGGATCTTGTTGTTATCACAGAGACTACTATTCCGACGAAAATCACTCACGTGAACAAG  61
            ||||||||||||||| ||| |||||||| |||||| || |||||||||||||||||||||
Sbjct  1    ATGGATCTTGTTGTTGTCATAGAGACTAGTATTCCAACAAAAATCACTCACGTGAACAAG  60

Query  62   AAATCCTCCGACGAATTGCTCCGTAAGTTCGCCGATCCTGACGACGTCGACGAGTCGTCA  121
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |
Sbjct  61   AAATCCTCCGACGAATTGCTCCGTAAGTTCGCCGATCCCGACGACGTCGACGAGTC---A  117

Query  122  AAGTCAACGAAACGCCGGAAGAAATCAGCTAAGAGTTCTTCTCGAGAGAAGGGCGTTGAC  181
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  118  AAGTCAACGAAACGCCGGAAGAAATCAGCTAAGAGTTCTTCTCGAGAGAACGGCGTTGAC  177

Query  182  ATCGAAAGTAACACTAGTGGCTTAGTGGAGAGGAAACGGCTCTTGCTTGCCCCGGCGAGT  241
            ||||||||||||| || ||| || |||||||||||||||||||||||||| |||||||||
Sbjct  178  ATCGAAAGTAACAGTATTGGTTTGGTGGAGAGGAAACGGCTCTTGCTTGCTCCGGCGAGT  237

Query  242  AAACGGAGATCTCTGTTTATCCGGCAGCTTGCTTCTGGAAAATCACATCTCAGGAACAAG  301
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  238  AAACGGCGATCTCTGTTTCTCCGGCAGCTTGCTTCTGGAAAATCACATCTCAGGAACAAG  297

Query  302  TCTCTCGTCAGAACCATCGGCAAGACATGGCGTAAAACAATGGAAGGAGCTTCAAGAGTT  361
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  298  TCTCTCGTCAGAACTATCGGCAAGACATGGCGTAAAACAATGGAAGGAGCTTCAAAAGTT  357

Query  362  TTCATCGAGAAGCATTATAACAGACACAGGCGTCTCACCAACGACGTCGTTTAAGCttt-  420
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| 
Sbjct  358  TTCATCGAGAAGCATTATAACAGACACAGGCGTCTCATCAACGACGTCGTTTAAG-TTTC  416

Query  421  ttcaatctttttt-tcttttCTCACTATTTTACATTCGTTTGTATTATTCTCACGTTTAG  479
            ||||| ||||||| | |||||||||||||||| ||||||||||||||| |||||||||||
Sbjct  417  TTCAA-CTTTTTTATTTTTTCTCACTATTTTATATTCGTTTGTATTATCCTCACGTTTAG  475

Query  480  T  480
            |
Sbjct  476  T  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18047593597


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5