BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G42110.1 Length=497 Score E Sequences producing significant alignments: (Bits) Value Ahg483297 jgi|Araly1|483297|fgenesh2_kg.4__2357__AT2G42110.1 732 0.0 > Ahg483297 jgi|Araly1|483297|fgenesh2_kg.4__2357__AT2G42110.1 Length=476 Score = 732 bits (396), Expect = 0.0 Identities = 454/481 (94%), Gaps = 7/481 (1%) Strand=Plus/Plus Query 2 ATGGATCTTGTTGTTATCACAGAGACTACTATTCCGACGAAAATCACTCACGTGAACAAG 61 ||||||||||||||| ||| |||||||| |||||| || ||||||||||||||||||||| Sbjct 1 ATGGATCTTGTTGTTGTCATAGAGACTAGTATTCCAACAAAAATCACTCACGTGAACAAG 60 Query 62 AAATCCTCCGACGAATTGCTCCGTAAGTTCGCCGATCCTGACGACGTCGACGAGTCGTCA 121 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 61 AAATCCTCCGACGAATTGCTCCGTAAGTTCGCCGATCCCGACGACGTCGACGAGTC---A 117 Query 122 AAGTCAACGAAACGCCGGAAGAAATCAGCTAAGAGTTCTTCTCGAGAGAAGGGCGTTGAC 181 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 118 AAGTCAACGAAACGCCGGAAGAAATCAGCTAAGAGTTCTTCTCGAGAGAACGGCGTTGAC 177 Query 182 ATCGAAAGTAACACTAGTGGCTTAGTGGAGAGGAAACGGCTCTTGCTTGCCCCGGCGAGT 241 ||||||||||||| || ||| || |||||||||||||||||||||||||| ||||||||| Sbjct 178 ATCGAAAGTAACAGTATTGGTTTGGTGGAGAGGAAACGGCTCTTGCTTGCTCCGGCGAGT 237 Query 242 AAACGGAGATCTCTGTTTATCCGGCAGCTTGCTTCTGGAAAATCACATCTCAGGAACAAG 301 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 238 AAACGGCGATCTCTGTTTCTCCGGCAGCTTGCTTCTGGAAAATCACATCTCAGGAACAAG 297 Query 302 TCTCTCGTCAGAACCATCGGCAAGACATGGCGTAAAACAATGGAAGGAGCTTCAAGAGTT 361 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 298 TCTCTCGTCAGAACTATCGGCAAGACATGGCGTAAAACAATGGAAGGAGCTTCAAAAGTT 357 Query 362 TTCATCGAGAAGCATTATAACAGACACAGGCGTCTCACCAACGACGTCGTTTAAGCttt- 420 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 358 TTCATCGAGAAGCATTATAACAGACACAGGCGTCTCATCAACGACGTCGTTTAAG-TTTC 416 Query 421 ttcaatctttttt-tcttttCTCACTATTTTACATTCGTTTGTATTATTCTCACGTTTAG 479 ||||| ||||||| | |||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 417 TTCAA-CTTTTTTATTTTTTCTCACTATTTTATATTCGTTTGTATTATCCTCACGTTTAG 475 Query 480 T 480 | Sbjct 476 T 476 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18047593597 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5