BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42120.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483299 jgi|Araly1|483299|fgenesh2_kg.4__2359__AT2G42120.1 2305 0.0
> Ahg483299 jgi|Araly1|483299|fgenesh2_kg.4__2359__AT2G42120.1
Length=1460
Score = 2305 bits (1248), Expect = 0.0
Identities = 1392/1461 (95%), Gaps = 11/1461 (1%)
Strand=Plus/Plus
Query 68 ATGGAAATCGACTCCGAGAAAATTCACGAAAGGAAGCAATCCGATTACAATTCGCTGCAG 127
|||||||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||
Sbjct 1 ATGGAAATCGACTCCGAGAAGATTCACGAACGGAAGCATTCCGATTACAATTCACTGCAG 60
Query 128 GATGAGAGATTCGAGATACAGAAGGAGATGTACAGAGGTCAGCAATACAGTCAGATTTAC 187
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GATGAGAGATTCGAGATACAGAAGGAGATGTACAGAGGGCAGCAATACAGTCAGATTTAC 120
Query 188 TTTGCTCGTCTTCATCTCATGAGAACACTTCTCTACTCTCTTGCTCCTACTTGGAAATCT 247
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 121 TTTGCTCGTCTTCATCTCATGAGAACACTTCTCTACTCTCTTGCCCCTACTTGGAAACCC 180
Query 248 CATTTGCCTGTGTGTAAGGTTTTGGGACTTGAAAAAGGAAAAGAATGCATAATTGTGGGA 307
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 181 CATTTGCCTGTTTGTAAGGTTTTGGGACTTGAAAAAGGAAAAGAATGCGTAATTGTAGGA 240
Query 308 ACCTTGTTCAAACACATGAAGCTTAAACCTTGTGTTCTCGATGAATATTCTAAAGAGAGG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCTTGTTCAAACACATGAAGCTTAAACCTTGTGTTCTCGATGAATATTCTAAAGAGAGG 300
Query 368 TCAGTTACTCCGCTTGTTAAACCACATAACTTTATGCATCCTGATGATAATCTGATCCTC 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCAGTTACTCCGCTTGTTAAACCACATAACTTTATGCATCCTGATGATAATCTGATCCTC 360
Query 428 GAAGACGAGAGTGGGAGAGTTAAGCTTGCTGGTTCCGCACTTTCACCTGCGATTTATGTG 487
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 361 GAAGACGAGAGTGGGAGAGTTAAGCTTGCTGGTTCTGCACTTTCACCTGCTATATATGTG 420
Query 488 ACAGGTGTTGTTGTTGCACTGCATGGGAAGGAAACTAATGCTGGTGAATTCTTTGTTGAG 547
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACAGGTGTTGTTGTTGCATTGCATGGGAAGGAAACTAATGCTGGTGAATTCTTTGTTGAG 480
Query 548 GATGTACTAGAAGCTGGTTTACCACCTCAGATTGAGCGGCCTATCGATCTACAGGAAGAT 607
|||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 481 GATGTATTAGAAGCTGGTTTACCGCCTCAGATAGAGCGGCCTATCGATCTACAGGATGAT 540
Query 608 AAATATGTCGTGTTATTGTCGGGCCTTTGTATTGGAAGCAAATCGGCTAATCCCCTGCAG 667
||||| || |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 541 AAATACGTTGTGTTATTGTCGGGCCTTTGCATTGGAAGCAAATCGGCTAATCCCTTGCAA 600
Query 668 TTTCAGCTTCTTGTTGACCATATAACTGGGCATCTCGGAGATGAGGAGGAACAAGGCCTT 727
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTCAGCTCCTTGTTGACCATATAACTGGGCATCTCGGAGATGAGGAGGAACAAGGCCTT 660
Query 728 GCAGCACAGATAGTTCATGTAGTAATTGCTGGAAACTCTTTTGAATTTCCCCGCAAACTC 787
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 GCAGCACAGATAGTTCATGTAGTAATTGCTGGAAACTCTGTTGAATTTCCCCGCAAACTC 720
Query 788 ATTAATGGCCAGAACTTGGCCTCGAAAGATCAATCGACACTGTATGAGCCCATCAAAGAG 847
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 721 ATTAATGGCCAGAACTTGGCCTCAAAAGATCAATCAACACTGTATGAGCCCATCAAAGAG 780
Query 848 CTTGATATCATGTTAAGCCAGATAGCTGCAGGAGTTTCAGTAGATATCATGCCAGGCACG 907
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTGATATCATGTTAAACCAGATAGCTGCAGGAGTTTCAGTAGATATCATGCCAGGCACG 840
Query 908 AATGATCCAGCTAACTTCGCATTGCCTCAGCAGCCTCTGAATAGATGTCTTTTCCCTGGA 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AATGATCCAGCTAACTTCGCATTGCCTCAGCAGCCTCTGAATAGATGTCTTTTCCCTGGA 900
Query 968 TCTTCACCTTATAACACCTTCAGATCATGTACAAATCCTCACTCATTTGATGTCGATAAT 1027
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 901 TCTTCACCTTATAACACCTTCAGATCATGTACAAATCCTCACTCATTTGATCTCGATAAT 960
Query 1028 ATCAGATTTCTTGGAACTTCTGGTCAGAACATCGATGACCTTGGCAAGTACTCAGAGGCT 1087
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 961 ATAAGATTTCTGGGAACTTCTGGTCAGAACATCGATGACCTTGACAAGTACTCAGAGGCT 1020
Query 1088 AAGAGCAAGCTTGATTTTGTGGAAAGAACGCTGAGGTGGAGACATCTTGCCCCAACTGCA 1147
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 AAAAGCAAGCTTGATTTTGTTGAAAGAACGCTGAGGTGGAGACATCTTGCCCCCACTGCA 1080
Query 1148 CCTAATACACTCGGTTGTTATCCTTTCACCGATAGAGACCCTTTCTTGATTGAAACCTGC 1207
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1081 CCTAATACACTTGGTTGTTATCCTTTCACCGATAGAGACCCTTTCTTAATTGAAACTTGC 1140
Query 1208 CCGCATGTCTACTTCGTCGGGAA-TCAAGATAAATATGACAACCGTTTGATAAAGGGGTC 1266
|| |||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||
Sbjct 1141 CCTCATGTCTACTTCGT-GGGAAATCAAGAGAAATATGACAACCGTTTGTTAAAGGGGTC 1199
Query 1267 AGAAGGGCAGCTTGTCCGGTTGATCTGCATTCCTAAGTTCTGTGAGACCGGTATTGCTGT 1326
||||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1200 AGAAGGGCAACTTGTTCGGTTGATCTGCATTCCTAAGTTCTGTGAGATCGGAATTGCTGT 1259
Query 1327 TGCGGTGAACCTAAGAAATCTGGAATGTCACACTTTAAGCTTTAGCACTCAGATAAACCA 1386
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1260 TGCGGTGAACCTAAGAAATCTGGAATGTCATACTCTAAGCTTTAGCACTCAGATAAACCA 1319
Query 1387 ATCATAACATTGAGTTGCTACTTTGGTAGATTATTTCCT-GTCTTGAAGATGTAATGTTG 1445
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1320 ATTATAACATTGAGTTGCTACTTTGGTAGATTATTTCCTTGTCTTGAAGATGTAATGTTA 1379
Query 1446 AGCTTTTTCAGTAACACACTCCTATGTTCTAACCAAATGTT-T-------GTTAAAAATC 1497
|||||||||| | |||| ||| ||||||||||||| |||| | ||||||||||
Sbjct 1380 AGCTTTTTCACTCACACTTTCCCATGTTCTAACCAAGTGTTATTTCTTTTGTTAAAAATC 1439
Query 1498 CTTTTTCTTGAGTGGAACTTC 1518
||| ||||| |||||||||||
Sbjct 1440 CTTGTTCTTTAGTGGAACTTC 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5