BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42130.4
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483302 jgi|Araly1|483302|fgenesh2_kg.4__2362__AT2G42130.4 1491 0.0
> Ahg483302 jgi|Araly1|483302|fgenesh2_kg.4__2362__AT2G42130.4
Length=1090
Score = 1491 bits (807), Expect = 0.0
Identities = 919/974 (94%), Gaps = 4/974 (0%)
Strand=Plus/Plus
Query 12 ATTCTCAATCTTTCGT-TTTTCACcttc-ttcttcttcttcttcttcAATGGCGTTGATA 69
|||||||||||||||| |||| | || ||| || |||||||||||||||||||| ||
Sbjct 1 ATTCTCAATCTTTCGTGTTTT-GTC-TCTTTCACCTCCTTCTTCTTCAATGGCGTTGTTA 58
Query 70 CATGGTTCGGTTCCTGGTACGTCTGCGGTTCGATTGGTTTTTTCAACCTCAGCGTCACCG 129
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 59 CATGGTTCGATTCCTGGTACGTCTGCGGTTCGATTGGGCTTTTCAACCTCAGCGTCACCG 118
Query 130 TCGAGATTTTGTCTCAATGTTCCGGTGGTGAAGCAGGGTTGGAAGAATTCGTGCCGGAGA 189
|||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TCGAGAGTTTCTCTCGTTGTTCCGGTGGTGAAGCAGGGTTGGAAGAATTCGTGCCGGAGA 178
Query 190 AGGGTTTTAAGAGCAATGGTGCAGGAAACAGTTCAAGGATCTCCTTTGGTTTACGCCAGA 249
|| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 179 AGAGTTTTAAGAGCAATGGTGCAGGAAACAGTTTTAGGATCTCCTTCGGTTTACGCCAGA 238
Query 250 GAAATGGAGCGCCTTTCTGCTAAGGAATCGCTACTTCTCGCTTTGAAGGATGCTGGAGGC 309
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 239 GAAATGGAGCGCCTTTCTGCTAAGGAATCGCTAGTTCTCGCTTTGAAGGATGCTGGAGGC 298
Query 310 TTTGAGGCTTTAGTTACAGGGAAAACAACTAATATGCAAAGGATCGATGTTAATGAGAGG 369
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 TTTGAGGCTTTAGTTACAGGGAAAACAACTAATATGCAAAGGATCGATGTGAATGAGAGA 358
Query 370 ATTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCACGTCTCCTTGTTTCGAA 429
||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 359 ATTACTAGTCTAGAGCGGCTTAACCCGACTCCTAGACCAACCACGTCTCCTTGTTTCGAA 418
Query 430 GGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTT 489
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGCAGATGGAATTTTGAGTGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTT 478
Query 490 ATATTCGAGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAG 549
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATATTCGAGAGATTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAG 538
Query 550 GATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGATAGAAAGCAAAATC 609
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 539 GATGCTAACGCAAAGGCGACGGCAAATATCAAACTTTTGAACTCGATAGAAAGCAAAATC 598
Query 610 ATTCTGTCATCAAAATTGACTGTTGAGGGACCACTGAGATTGAAAGAAGAATATGTTGAA 669
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 599 ATTCTGTCATCAAAATTGACTGTCGAGGGACCTTTGAGATTGAAAGAAGAATATGTTGAA 658
Query 670 GGTATGCTTGAAACTCCAACAGTCATTGAAGAAGCAGTTCCTGAACAGCTAAAAAGCGCT 729
|||||||| ||| | ||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 659 GGTATGCTCGAATCCCCAACAGTCATTGAAGAAGCAGTTCCTGAACAGCTTAAAGGTGCA 718
Query 730 TTGGGACAAGCTGCCACAACGTTGCAGCAGCTTCCTGCTCTTATCAAGGATACTCTAGCC 789
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTGGGTCAAGCCGCCACAACGTTGCAGCAGCTTCCTGCTCTTATCAAGGATACTCTAGCC 778
Query 790 AGTGGTCTGAGAATTCCCCTTAGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTA 849
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 779 AGTGGTCTGAGAATTCCCCTAAGTGGTTCCTTTGAAAGATTCTTCATGATATCTTATCTA 838
Query 850 GATGAAGAGATTCTTATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATA 909
|| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 839 GACGAAGAGATTCTTATAGTTAGAGATACTGAAGGAGTGCCTGAAGTTCTAACGAGGATT 898
Query 910 GAAACACCATCATCGACCGTTGTAGAAACTATCGAATATGATAGTTAGATGTGACTAGCC 969
|||||||||||||| ||||||||||||||| | ||||| ||||||||||||| |||||||
Sbjct 899 GAAACACCATCATCTACCGTTGTAGAAACTCTTGAATACGATAGTTAGATGTTACTAGCC 958
Query 970 ATTGTTCTTGTTCT 983
||||||||||||||
Sbjct 959 ATTGTTCTTGTTCT 972
Score = 87.9 bits (47), Expect = 2e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1011 TACAAGAACCAACCACCAAGTTGGTGTCTGTAAATGTATGACGTTAATAACTT 1063
||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 972 TACAAGAACCAACCACCAAGTTGGTGTCTGTAAATGTTTGAAGTTAATAACTT 1024
Score = 86.1 bits (46), Expect = 5e-16
Identities = 62/69 (90%), Gaps = 3/69 (4%)
Strand=Plus/Plus
Query 1117 AATCTTCTCAAGTTATCCAAGTACTTGCAGATTCTCTGTTTTGATCATCTTAATAAACTC 1176
||||||||||| || |||||||||||||||||||||||||||||| || | | |||||||
Sbjct 1025 AATCTTCTCAACTTTTCCAAGTACTTGCAGATTCTCTGTTTTGAT-AT-TCA-TAAACTC 1081
Query 1177 TTTCTATGT 1185
||||| |||
Sbjct 1082 TTTCTTTGT 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5