BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42140.1
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935075 jgi|Araly1|935075|scaffold_403063.1 617 3e-176
> Ahg935075 jgi|Araly1|935075|scaffold_403063.1
Length=569
Score = 617 bits (334), Expect = 3e-176
Identities = 484/552 (88%), Gaps = 27/552 (5%)
Strand=Plus/Plus
Query 34 TTCTACAAAAC----TATGGAAATTGAAGCTACTACTGTTCAGAAAAGAAGAAGCTTACC 89
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 5 TTCTACAAAACTATATATGGAAATTGAAGCTACTACTGTTCAGAAAAGAAGAAGCATACC 64
Query 90 AACAATAGCCATGCACAAACAGTCAAGAACACTCACCAAATCTAAACCTAAGATCCGAAT 149
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 65 AACAATAGCCATGCACAAGCAGTCAAGAACACTAACCAAATCTAAACCTAAGATCCGCAT 124
Query 150 CATTCACATATTCGCACCGGAGATCATTAAGACCGATGTCGCCAACTTCCGGGAAATCGT 209
||| |||||||||||||||||||||||||||||||| ||| | |||||| || |||||||
Sbjct 125 CATCCACATATTCGCACCGGAGATCATTAAGACCGACGTCTCTAACTTCAGGAAAATCGT 184
Query 210 CCAGAATCTCACCGGGAAACAAGATCATCATCACCACGATCTCCCCCACCAAAAGGGTCT 269
||||||||||||||| |||||||||||| | | | |||| ||||| ||||||||||| ||
Sbjct 185 CCAGAATCTCACCGGAAAACAAGATCATGA-C-C-ACGACCTCCCTCACCAAAAGGGCCT 241
Query 270 CAAAAGAAACCCTAGATCTAGAAGAAGTCATGATCATCATGA--AGTC--CATGAC-ATG 324
||||||||||||||||||||| |||||||||||||| |||| | || || | | ||
Sbjct 242 AAAAAGAAACCCTAGATCTAGAGGAAGTCATGATCATGATGATCA-TCATCAAGTCCATC 300
Query 325 AACAAGAGCCATG-GATTTTGCATAAACTCAGA--T-GAAGA-G--GAAGAAG--GG-AT 374
| || || | | | |||| |||| ||||||||| | ||||| | ||||||| || ||
Sbjct 301 A-CATGAACAA-GAGATTCTGCACAAACTCAGAAGTAGAAGACGAAGAAGAAGTAGGGAT 358
Query 375 GGTGTCGATGACGTGGAACGGAAATGGTGACGAGAGCTCCGGTGGGTTCTTGAACGGGTT 434
||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||
Sbjct 359 GGTGTCGATGACGTGGAACGGAAATGGCGGTGAGAGCTCCGGTGGGTTCTTCAACGGGTT 418
Query 435 AGGAGATCTCGACGGCTTCATTCAGGAGCTAGGTGAATTTCCTTATTTACCCTTCACCAT 494
||| ||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 419 AGGGGATTTCGGCGGCTTCATTCAGGAGCTAGATGAATTCCCTTATTTACCCTTCACCAT 478
Query 495 TGACCCTGCCGTTGCTTCTTCC-TCCCACTTACATGGCAACGTTTTCGCAGAACCTCACC 553
||||||| | ||||||||||| ||| |||||||||||||||||||||| |||||| |||
Sbjct 479 TGACCCTACTGTTGCTTCTTCTGTCC-ACTTACATGGCAACGTTTTCGCTGAACCTAACC 537
Query 554 ATTACGCCTAAA 565
|||| |||||||
Sbjct 538 ATTATGCCTAAA 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31489529442
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5