BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G42150.1

Length=2105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg346013 jgi|Araly1|346013|fgenesh1_pg.C_scaffold_4002355           472    6e-132


> Ahg346013 jgi|Araly1|346013|fgenesh1_pg.C_scaffold_4002355
Length=462

 Score =  472 bits (255),  Expect = 6e-132
 Identities = 332/369 (90%), Gaps = 6/369 (2%)
 Strand=Plus/Plus

Query  1376  TTGCCTCCTGGACCAGATA--AAAAGGCCAAGAAAACAGATCATGTTGTGGACT-ATGAT  1432
             |||||||| ||||||||||  ||||   |||||||||||||||||||||||  |  ||||
Sbjct  91    TTGCCTCCAGGACCAGATACGAAAA--TCAAGAAAACAGATCATGTTGTGG-TTGGTGAT  147

Query  1433  GAGAAGCCGGTTTCAGACAAGGATGGTGAAGCCTCTGGGAAAGACGATGATGACTCTCTG  1492
             ||||||||||||||||||||||||| |||||||||||| ||| |||||| ||| ||||||
Sbjct  148   GAGAAGCCGGTTTCAGACAAGGATGATGAAGCCTCTGGAAAATACGATGGTGAATCTCTG  207

Query  1493  ATTGTGAAGATAATGACTAGAGGAAGAACCTCCTCGACGGGAAAAGTAGCTAACAGGAAC  1552
             ||| |||||| ||||||||||||||||||||||||||||  ||||||||| |||||||||
Sbjct  208   ATTATGAAGACAATGACTAGAGGAAGAACCTCCTCGACGAAAAAAGTAGCAAACAGGAAC  267

Query  1553  GACAAGAACCGTGACTCCAGTTTGAATGTTGATGATAGCAAAGATAAGGTTAAGAAAACT  1612
             | ||||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||
Sbjct  268   GTCAAGATCCGTGAATCCAGTTTGAATGTTGATGATAGCAAAGGCAAGGTTAAGAAAACT  327

Query  1613  GATGAAGAGAAGAAAGGTGGCTCGAAAAAGAAAAGGGCTGCGAGTTTTCTCAGGAGAATG  1672
             |||||||||||||||||  |||| ||||||| ||| |||||||||||||||| |||||||
Sbjct  328   GATGAAGAGAAGAAAGGAAGCTCAAAAAAGAGAAGTGCTGCGAGTTTTCTCAAGAGAATG  387

Query  1673  AAAGTGGGCTCTTCGGATGACACATTGAAGCGTAGCTCTGCTGCTGATTCTTCTACTACG  1732
             |||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||| | 
Sbjct  388   AAAGTGGGTTCTTCGGATGAGACATTGAAGCCTAGCTCTGCGGCTGATTCTTCTACTGCT  447

Query  1733  GGAAAAGGA  1741
             |||||||||
Sbjct  448   GGAAAAGGA  456



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 79189619355


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5