BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42160.1
Length=1735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935078 jgi|Araly1|935078|scaffold_403066.1 2362 0.0
> Ahg935078 jgi|Araly1|935078|scaffold_403066.1
Length=1507
Score = 2362 bits (1279), Expect = 0.0
Identities = 1436/1512 (95%), Gaps = 10/1512 (1%)
Strand=Plus/Plus
Query 47 GCTCTTTCCCGCTTCTGGCGATGTTCATCCTCAGAGTTCATTCCGTTGACTCCGAGAGAC 106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 GCTCTTTCCCGCTTCTGGCGATGTTCATCCTCAGAGTTCATTCCGTTGACTCCGAGCGAC 60
Query 107 CAATCTCCGTTGAAGAAGAAGAATCAGGTTTCACTTACGCATCGAAA-AGAGCTCAGCCT 165
|||||||| |||||||||| |||||||||||||| |||||||| ||| ||| ||||||||
Sbjct 61 CAATCTCCATTGAAGAAGATGAATCAGGTTTCACCTACGCATC-AAAGAGAACTCAGCCT 119
Query 166 CCTCTTAAACTCATACAACCATCTCTCAAACTCACCGACCGCAAAGGCTTGATCCATCTC 225
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 CCTCTTAAACTCATACAACCATCTCTCAAACTCACCGAACGCAAAGGCTTGATCCATCTC 179
Query 226 TATCGCAAATCTTCACATAGCTCTCTGCCTAACCCTAGCTCCCGATCCACCACTCTCTTC 285
|| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 180 TACCGCAACTCTTCACATAGCTCGCTACCTAACCCTAGCTCCCGATCCACCACTCTCTTC 239
Query 286 ATCGTCGCTGTTCCCAATTATC-TCTCCTCTCTCGATTTTATCCGTTTCTGTGATTCCCG 344
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 240 ATCGTCGCTGTTCCCAATTA-CATGTCCTCTCTCGATTTTATCCGTTTCTGTGATTCCCG 298
Query 345 CATCTCCCAAGTCTCCGACATCCTCTTCATCAGGAACGATGGAATGGAAGATAGATATAG 404
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 CATCTCCCAAGTCTCCGATATCCTCTTCATCAGGAACGATGGAATGGAAGATCGATATAG 358
Query 405 TGTTCTTATCACATTTTCTGATCAATCCGAAGCTGATGGTTTCTACAACAACTTGAATGG 464
||||||||||||| || ||||||||||||||| |||||||||||||| || |||||||
Sbjct 359 TGTTCTTATCACACTTAGTGATCAATCCGAAGCAGATGGTTTCTACAATTACCTGAATGG 418
Query 465 GAAAA-AGTTCGCACCATCTGAGGCTGAGGTTTGTCATATTCTATATGTAATGTCGGTGG 523
||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 GAAAACA-TTTTCACCATCTGAGGCTGAGGTTTGTCATATTCTCTATGTAATGTCGGTGG 477
Query 524 AACACACAGAATTTGATGAGGTTGCTGCAGAAGCACCTACTGGATTTACCGAGTTACCTA 583
| ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 ATCACACGGAATTTGATGTGGTTGCTGCAGAAGCACCTGCTGGATTTACCGAGTTACCTA 537
Query 584 CGTGTCCAATATGTCTTGAGAGATTAGATCCTGACACCAGTGGTATAGTTAGCACTCTTT 643
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTTGTCCAATATGTCTTGAGAGATTAGATCCTGACACCAGTGGTATAGTTAGCACTCTTT 597
Query 644 GTGATCACTCGTTTCAGTGTTCTTGCACTTCGAAATGGACTTATCTGTCTTGTCAGGTTT 703
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 598 GTGATCACTCCTTTCAGTGTTCTTGCACTTCAAAATGGACTTATCTGTCCTGTCAAGTTT 657
Query 704 GTCGATTGTGTCAACAGCAAGATGAGATATTAAACTGTTCTATTTGTGGAAAAACTGAGA 763
|||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||
Sbjct 658 GTCGATTGTGTCAACAACAAGATGAGATATTAAGCTGTTCTGTTTGTGGAAAAACAGAGA 717
Query 764 ATGTATGGGCATGCCTTGTCTGTGGCTTCGTAGGTTGTGGAAGATACAAGGAAGGGCATT 823
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 718 ATGTATGGGCATGTCTTGTCTGTGGCTTCTTAGGTTGTGGAAGATACAAGGAAGGGCATT 777
Query 824 CTATTAGGCACTGGAAAGAAACGCATCACTGCTATTCTCTTGATTTGCGAACACAACAAA 883
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 778 CTATCAGGCACTGGAAAGAAACGCATCACTGCTATTCTTTTGATTTGCGAACACAACAAA 837
Query 884 TCTGGGATTATGTTGGTGACAGCTATGTTCATCGGTTAAACCATTCAAAAATTGATGGAA 943
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 838 TCTGGGATTATGTTGGTGACAGCTATGTTCATCGGTTAAATCATTCAAAAATTGATGGAA 897
Query 944 AGTCAGTAGAGATGAGCACCAGTTGTCTGTCACACCAGGGGGACTGTGGCCTCTGTGAGT 1003
||||||||||||||| |||| |||||||||||||| | ||||||||||| ||||||||||
Sbjct 898 AGTCAGTAGAGATGAACACCCGTTGTCTGTCACACGAAGGGGACTGTGGTCTCTGTGAGT 957
Query 1004 GTAGTGAGGATACAGGAATTAGCGGAGCTATCTTTAACAGCAAAGTTGATTCAATTGTAA 1063
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 958 GTAGTGAGGATACAGGAATTAGCGGAGCCATCTTTAACAGCAAAGTTGATTCAATTGTAA 1017
Query 1064 TCGAGTATAATGACCTTCTTGCAAGTCAACTAAAGGGACAGCGACAGTACTATGAATCTC 1123
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 TCGAGTATAATGACCTCCTTGCAAGTCAACTTAAGGGACAGCGACAGTACTATGAATCTC 1077
Query 1124 TCATTGTTGAGGCGAGAAGCAAGCAAGAAAGTAGTATTGCCGAAGCAGTAGAGCAAATTG 1183
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1078 TCATTGTTGAGGCGAGAAGCAAGCAGGAAAGTAGTATTGCCGAAGCAGTTGAGCAAATTG 1137
Query 1184 TTGTTAACACAATGCAGGAGCTTCAGAATAAGATTGAAAAATGTGAAGAGGAAAAAAGTG 1243
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1138 TTGTTAACAAAATGCAGGAGCTTCAGAATGAGATTGAAAAATGTGAAGAGGAAAAAAGTG 1197
Query 1244 GTATCACTGAAGTTAACACAAAACTTATAAAAGAGCAGGATACTTGGCGGAAGAAGGCCA 1303
|||| ||||| || || | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1198 GTATTACTGAGGTGAATAGAAAACTTATAAAAGAGCAGGAAACTTGGCGGAAGAAGGCCA 1257
Query 1304 AAGAAATAGAAGAGAGGGAAGCTGCATTGCTAGGATCAAAAGACGAGATGATAACTGATC 1363
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1258 AAGAAATAGAAGAGAGGGAAGCTGCATTGCTAGGATCAAAAGACGAGATGCTAGCTGATC 1317
Query 1364 TTCAAGAACAGATAAGAGATATTACGGTCTTCATTGAAGCCAAGAAAACCTTAAAGAAGA 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTCAAGAACAGATAAGAGATATTACGGTCTTCATTGAAGCCAAGAAAACCTTAAAGAAGA 1377
Query 1424 TGTCATCAGATACGGATGGTATACGCGAAGGAACCGTCTTACCAGTGCCTATCAGTC-CC 1482
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1378 TGTCATCAGATTCGGATGGTATACGCGAAGGAACCGTCTTACCAGTGCCTATCAA-CGCC 1436
Query 1483 GAGCCAGTTTCCTCAGTTAGAAGGCAAAAGAAGTCAAACCGGAGAAAGTAAAGAACAGAT 1542
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 1437 GAGCCAGTTTCCTCAGTTAGAAGGCAGAAGAAGCCAAACCGGAGAAAGTAAAGAGCAGAT 1496
Query 1543 TTG-GTATGCTT 1553
||| | ||||||
Sbjct 1497 TTGTG-ATGCTT 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65096228705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5