BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42180.1
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483306 jgi|Araly1|483306|fgenesh2_kg.4__2366__AT2G42180.1 1005 0.0
> Ahg483306 jgi|Araly1|483306|fgenesh2_kg.4__2366__AT2G42180.1
Length=917
Score = 1005 bits (544), Expect = 0.0
Identities = 683/747 (91%), Gaps = 21/747 (3%)
Strand=Plus/Plus
Query 199 ATAAGTAAATAACAGGGACTTGTAAGGTTATAAACGTCAAGAAAGTCCCTTATAAATAGT 258
|||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||||
Sbjct 121 ATAAGTAAATAACAGGAACTTGTAGGGCTATAAACGTCAACAAAGTCCCTTATAAATAGT 180
Query 259 CGAGATTGTCGATTAATGCACATAAAAGAAGAGTGTGAGATAGACTCTAGAGTTGTCGTT 318
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 CGAGATTGTCGATTAATGCACATAAAAGAAGAGTGTGAGATAGCCTCTAGAGTTGTCGTT 240
Query 319 GAGTAATGCAGCTCAAAAGGTCATCATCTTCTTCCCACTCCACGAATCTCAAAACCCTAT 378
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 GAGTCATGCAGCTCAAAAGGTCATCATCTTCTTCCCACTCCATGAATCTCAAAACCCTAT 300
Query 379 TCATAAATCTCATCACACACTCTCTTTACCGTCTTTTACGGTCTCTCTCAAGAGCCAGAT 438
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 301 TCCTAAATCTCATCACACACTCTCTTTACCGTCTTTTACGGTCTCTCTCACGAGCCAAAT 360
Query 439 CCGTTCTGATAGAGATTTCGAAACACAACAAGAAGAGGTTATTCATGATGATGTTTTACA 498
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCGTTCTTATAGAGATTTCTAAACACAACAAGAAGAGGTTATTCATGATGATGTTTTACA 420
Query 499 CGACAAAGTCATCCATGAACCAACACAACATCTTCTTTGGATCCTCCCATGTCGTTGTTC 558
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 421 CAACAAAGTCATCCATGAACCACCACAACATCTTCTTTGGATCCTCCCATGTCGTCGTTC 480
Query 559 CCGTCACTAAACCTTTCCCTTTCTCCCTTGATGGTCATGTTGAAGATGAGGATAATCTTG 618
| |||||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 481 CTGTCACTAAACCTTTCCCTTTCTCCGTTCATGGTCATG---AAGATGAGGATAATCTTG 537
Query 619 AGTCTCAATACCTCCAGTGGCTCGAAGAGAGAGTTGATGAGAATAATAACATTAATGATG 678
| |||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 538 AATCTCAATACCTCGAGTGGCTAGAAGAAAAAGTTGATGAGAATAATAACATTAATGATG 597
Query 679 ATCAGAGTGTTGGGGAGAGAGATGTTGGTGATGATGATATTGATCGTCTGGCAGATAAAT 738
|||| | |||| |||||||||||| |||||||||||| ||||||||| ||
Sbjct 598 ATCA---TC------AGAG---TGTTGGTGATGAAGATATTGATCGTTTGGCAGATATAT 645
Query 739 TCATCGCGAGGTGTCATGAGAAGTTCTTGCTGGAGAAGGTTGAATCTTACAGGAGATTCC 798
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 646 TCATCGCGAGGTGTCATGAGAAGTTTTTGCTGGAGAAGGTTGAATCTTACAGGAGATTCC 705
Query 799 AAGATATGTTGGCGAGGAGTTTGTGAGAACCGAGAATCAGAGCCACGAC-A-AAA-AGTT 855
||||||||||||| ||||||||||||||| ||| || ||||| ||||| | ||| ||||
Sbjct 706 AAGATATGTTGGCTAGGAGTTTGTGAGAATTGAGCATTAGAGCGACGACGACAAAGAGTT 765
Query 856 TATTTTATTTTGTTTTTAAGTCAATTATA-TTCTTGTTTGATGGAAATCTTAATTAATAA 914
|||||||| || |||| |||||||| ||| ||||||||||||||| |||| |||| |||
Sbjct 766 TATTTTATATT-TTTTAAAGTCAAT-ATAATTCTTGTTTGATGGATGTCTTGATTACTAA 823
Query 915 AATGAGAGAGACTGAAGCCTATACACA 941
|||| |||||| ||||||||||| |||
Sbjct 824 AATGCGAGAGAATGAAGCCTATATACA 850
Score = 196 bits (106), Expect = 2e-49
Identities = 117/122 (96%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 27 ATAACTGAGATGAATAATTAGGGAGGGGGCAGTTGCAAGTTGTTTAAAAATTGAAACCAA 86
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATAACTGAGATGAATAATTAGGGAGGGGGCAGTTGCAAGTTGTTTAAAATTTGAAACCAA 60
Query 87 CTC-GTATCACGATTGTGTCATCTCTAGATTTCGCCTCACGCGTACCTTGTTCAATTTTG 145
||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 61 CTCTGTATCACGATTGTGTCATCTCTAGATT-CTCCTCACGCGTACCTTGTTCAACTTTG 119
Query 146 AA 147
||
Sbjct 120 AA 121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38694760755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5