BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G42190.1

Length=883
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg346015 jgi|Araly1|346015|fgenesh1_pg.C_scaffold_4002357           422    3e-117


> Ahg346015 jgi|Araly1|346015|fgenesh1_pg.C_scaffold_4002357
Length=486

 Score =  422 bits (228),  Expect = 3e-117
 Identities = 285/311 (92%), Gaps = 9/311 (3%)
 Strand=Plus/Plus

Query  313  TATGAGAAGAGGTAGAGGGAAAGGGAAGAAGCAGAATGCATCTGCTCGGGAAGATCGTGG  372
            ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct  93   TATGAGAAGAGGTAGAGGGAAAGGGAAGAAGCAGAGTGCATCTACTCGGGAAGATCGTGG  152

Query  373  AAGCGGTGATGAAGAAAAGATTCCAGCTTACAGGagaagaggaagaccacagaagccgat  432
            ||||||||| |||||||||||||| ||||||||||||||||| || ||||| ||||||||
Sbjct  153  AAGCGGTGACGAAGAAAAGATTCCTGCTTACAGGAGAAGAGGGAGGCCACAAAAGCCGAT  212

Query  433  gaaagatgatttcgaagaggaagaagaagaagatgatgaagagatggtagagaaaatgga  492
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  213  GAAAGATGATTTCGAAGAGGAAGAAGAAGAAGATGAAGAAGAGATGGTAGAGAAAATGGA  272

Query  493  agtagaagatgaagatgaagagattgatgatgGTTCAGTAACAAGTAAAGATTTGAAGGA  552
            || ||||||||||||  ||    ||||||||||||| ||||||||||||||||||||| |
Sbjct  273  AGAAGAAGATGAAGA--AA----TTGATGATGGTTCTGTAACAAGTAAAGATTTGAAGAA  326

Query  553  G-AGAAA--GAGGAAGATGTCTAATGGAAGCAATACTGATCTGACTGAAGAAGAGAATGG  609
            | |||||  ||||||||||||||||||||||| ||| ||||| | ||||||||| |||||
Sbjct  327  GGAGAAAAAGAGGAAGATGTCTAATGGAAGCACTACGGATCTAAATGAAGAAGATAATGG  386

Query  610  TTTAGGATCGA  620
             ||||||||||
Sbjct  387  GTTAGGATCGA  397


 Score =  154 bits (83),  Expect = 1e-36
 Identities = 91/95 (96%), Gaps = 0/95 (0%)
 Strand=Plus/Plus

Query  645  GATCGACATCTATTGGGTTTAGACAAAATGGAAGCCGGAGGAAAAGCAAGCCGAGACGAG  704
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct  392  GATCGACATCTATTGGGTTTAGACCAAATGGAAGCCGGAGGAAAAGCAAGCCGAGGCGAG  451

Query  705  CTGCTGAAGCTGTCGTGGAATGTAACGGAGTTTGA  739
            ||||||||||||| |||||||||||||| ||||||
Sbjct  452  CTGCTGAAGCTGTTGTGGAATGTAACGGGGTTTGA  486



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32709462786


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5