BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42200.1
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935081 jgi|Araly1|935081|scaffold_403069.1 1266 0.0
Ahg339154 jgi|Araly1|339154|fgenesh1_pg.C_scaffold_2001253 82.4 9e-15
> Ahg935081 jgi|Araly1|935081|scaffold_403069.1
Length=1134
Score = 1266 bits (685), Expect = 0.0
Identities = 771/813 (95%), Gaps = 3/813 (0%)
Strand=Plus/Plus
Query 175 CTGAGTAAGAGGAAACCAACATGGAGATGGGTTCCAACTCGGGTCCGGGTCATGGTCCGG 234
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1 CTGAGTAAGAGGAAACCAAAATGGAGATGGGTTCCAACTCGGGTCCGGGTCATGTTCCGG 60
Query 235 GTCAGGCAGAGTCGGGTGGTTCCTCCACTGAGTCATCCTCTTTCAGTGGAGGGCTCATGT 294
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GTCAGGCAGAGTCTGGTGGTTCCTCCACTGAGTCTTCCTCTTTCAGTGGAGGGCTCATGT 120
Query 295 TTGGCCAGAAGATCTACTTCGAGGACGGTGGTGGTGGATCCGGGTCTTCTTCCTCAGGTG 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TTGGCCAGAAGATCTACTTCGAGGACGGTGGTGGTGGATCCGGGTCTTCTTCCTCTGGTG 180
Query 355 GTCGTTCAAACAGACGTGTCCGTGGAGGCGGGTCGGGTCAGTCGGGTCAGATACCAAGGT 414
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 GT--T-CAAACAGACGTGTCCGTGGAGGCGGGTCGGGTCAGTCGGGTCAGATACCAAGAT 237
Query 415 GCCAAGTGGAAGGTTGTGGGATGGATCTAACCAATGCAAAAGGTTATTACTCGAGACACC 474
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 238 GCCAAGTGGAAGGCTGTGGAATGGATCTAACCAATGCAAAAGGTTATTACTCGAGGCACA 297
Query 475 GAGTTTGTGGAGTGCACTCTAAAACACCTAAAGTCACTGTGGCTGGTATCGAACAGAGGT 534
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 298 GAGTTTGTGGAGTGCACTCTAAAACACCTAAAGTCATTGTTTCTGGTATCGAACAGAGGT 357
Query 535 TTTGTCAACAGTGCAGCAGGTTTCATCAGCTTCCGGAATTTGACCTAGAGAAAAGGAGTT 594
|||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 358 TTTGTCAACAGTGCAGCAGGTTTCATCATCTTGCGGAGTTTGACCTAGAGAAAAGGAGTT 417
Query 595 GCCGCAGGAGACTCGCTGGTCATAATGAGCGACGAAGGAAGCCACAGCCTGCGTCTCTCT 654
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 418 GCCGTAGGAGACTCGCTGGTCATAATGAACGACGGAGGAAGCCACAGCCTGCCTCTCTCT 477
Query 655 CTGTGTTAGCTTCTCGTTACGGGAGGATCGCACCTTCGCTTTACGAAAATGGTGATGCTG 714
|||||||| ||||||||||||||||||||||||| || ||||||| ||||| ||||||||
Sbjct 478 CTGTGTTATCTTCTCGTTACGGGAGGATCGCACCATCACTTTACGGAAATGCTGATGCTG 537
Query 715 GAATGAATGGAAGCTTTCTTGGGAACCAAGAGATAGGATGGCCAAGTTCAAGAACATTGG 774
|||||||||||||||||||||||||||||| ||| |||||||| ||| |||||| ||||
Sbjct 538 GAATGAATGGAAGCTTTCTTGGGAACCAAGGGATGGGATGGCCTAGTGAAAGAACGTTGG 597
Query 775 ATACAAGAGTGATGAGGCGGCCAGTGTCGTCACCGTCATGGCAGATCAATCCAATGAATG 834
|||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 598 ATACAAGAGTGATGAGACGGCCCGTGTCATCACCGTCGTGGCAGATCAATCCAATGAATG 657
Query 835 TATTTAGTCAAGGTTCAGTTGGTGGAGGAGGGACAAGCTTCTCATCTCCAGAGATTATGG 894
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 TATTTAGTCAAGGTTCAGTTAATGGAGGAGGGACAAGCTTCTCATCTCCAGAGATTATGG 717
Query 895 ACACTAAACTAGAGAGCTACAAGGGAATTGGCGACTCAAACTGTGCTCTCTCTCTTCTGT 954
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 ACACTAAACTAGAGAGCTACAAGGGAATTGGGGACTCAAACTGTGCTCTCTCTCTTCTGT 777
Query 955 CAAATCCACATCAACCACATGacaacaacaaca 987
||||||||||||||||||| |||||||||||||
Sbjct 778 CAAATCCACATCAACCACAGGACAACAACAACA 810
Score = 510 bits (276), Expect = 1e-143
Identities = 312/329 (95%), Gaps = 4/329 (1%)
Strand=Plus/Plus
Query 997 acaacaacaaca--acaacaacaaTACATGGCGAGCTTCTTCAGGTTTTGGCCCGATGAC 1054
||| |||| ||| |||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 785 ACATCAACCACAGGACAACAACAACACATGGCGAGCTTCTTCAGGTTTTGGCCCCATGGC 844
Query 1055 GGTTACAATGGCTCAACCACCACCTGCACCTAGCCAGCATCAGTATCTGAACCCGCCTTG 1114
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GGTTACAATGGCTCAGCCACCACCTGCACCTAGCCAGCATCAGTATCTGAACCCGCCTTG 904
Query 1115 GGTATTCAAGGACAATGATAATGATATGTCTCCTGTTTTGAATTTAGGT-CGATACACCG 1173
||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 905 GGTATTCAAGGACGATGATAATGATATGTCTCCTGTTTTGAATTTGGGTCCG-TACACCG 963
Query 1174 AGCCAGATAATTGTCAGATAAGTAGTGGCACGGCAATGGGTGAGTTCGAGTTATCTGATC 1233
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| || |
Sbjct 964 AGCCAGATAATTGTCAGATAAGCAGTGGCACAACAATGGGTGAGTTCGAGTTATCAGACC 1023
Query 1234 ACCATCATCAAAGTAGGAGACAGTACATGGAAGATGAGAACACAAGGGCTTATGACTCTT 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 ACCATCATCAAAGTAGGAGACAGTACATGGAAGATGAGAACACAAGGGCTTATGACTCTT 1083
Query 1294 CTTCTCACCATACCAACTGGTCTCTCTGA 1322
|||||||||||||||||||||||||||||
Sbjct 1084 CTTCTCACCATACCAACTGGTCTCTCTGA 1112
> Ahg339154 jgi|Araly1|339154|fgenesh1_pg.C_scaffold_2001253
Length=1230
Score = 82.4 bits (44), Expect = 9e-15
Identities = 88/109 (81%), Gaps = 4/109 (4%)
Strand=Plus/Plus
Query 525 GAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATCAGCT-TCCGGAATTTGACC-TAG 582
|||||||||||||||||||||||||||||||||||| || || | ||||||| | |
Sbjct 496 GAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATTTCCTCTCAG-AATTTGATGATGG 554
Query 583 AGAAAAGGAGTTGCCGCAGGAGACTCGCTGGTCATAATGAGCGACGAAG 631
||||| |||||| | ||| || | |||||||| ||||| ||| ||||
Sbjct 555 C-AAAAGAAGTTGCAGAAGGCGATTAGCTGGTCACAATGAACGAAGAAG 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56183111375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5