BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G42210.2

Length=1107
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321902 jgi|Araly1|321902|fgenesh1_pm.C_scaffold_4001959           881    0.0  


> Ahg321902 jgi|Araly1|321902|fgenesh1_pm.C_scaffold_4001959
Length=522

 Score =  881 bits (477),  Expect = 0.0
 Identities = 507/522 (97%), Gaps = 0/522 (0%)
 Strand=Plus/Plus

Query  325  ATGTTTAACTTGTGTGCGTTAGGTAGAACAGTAGAAGAAATCATGGATCCAGCTGAAATG  384
            |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGTTTTACTTGTGTGCGTTAGGTAGAACCGTAGAAGAAATCATGGATCCAGCTGAAATG  60

Query  385  AGATATTTGGAAGAAGAGGATGGTCCGTTGATGAAGACAATCAAAGGTAGTATCACTGGT  444
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AGATATTTGGAAGAGGAGGATGGTCCGTTGATGAAGACAATCAAAGGTAGTATCACTGGT  120

Query  445  TTTGGTGCTGGGACTATTTACGGAACCATTTTAGCCACATGGAAAGATGTTCCAAGAGTG  504
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  121  TTTGGTGCTGGGACTATTTACGGAACCATTTTAGCGACGTGGAAAGATGTTCCAAGAGTG  180

Query  505  GAGAGAAATGTGGCTCTTCCAGGACTTATTAGAACACTGAAGATGATGGGAACCCATGGG  564
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  181  GAGAGAAATGTGGCTCTTCCAGGACTTATTAGAACACTGAAGATGATGGGAACCCACGGG  240

Query  565  CTGACTTTTGCTGCTATAGGAGGTGTTTACATCGGTGTTGAACAGCTGGTTCAGAATTTT  624
            |||||||||||||| || ||||| |||||||||||||||||||| ||||||||||| |||
Sbjct  241  CTGACTTTTGCTGCCATCGGAGGCGTTTACATCGGTGTTGAACAACTGGTTCAGAACTTT  300

Query  625  AGATCCAAGAGAGATTTTTACAATGGTGCTATTGGTGGTTTTGTCGCTGGAGCTTCTGTG  684
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  301  AGATCCAAGAGAGATTTTTACAATGGTGCTATTGGTGGTTTTGTGGCTGGAGCTTCTGTG  360

Query  685  CTTGGCTATAGAGCAAGGAGCATCCCGACAGCGATAGCTGCAGGTGCAACACTAGCTGTT  744
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  361  CTTGGCTATAGAGCAAGGAGCATCCCAACAGCAATAGCTGCAGGTGCAACACTAGCTGTT  420

Query  745  ACCTCTGCTTTGATTGATTCTGGAGGTCAGACCACAAGAGTAGACAATGGCAGAGAATAC  804
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  421  ACCTCTGCTTTGATTGATTCTGGAGGTCAGACCACAAGAGTAGACACTGGCAGAGAATAC  480

Query  805  TATCCTTACACCGTCGAGAAAAGAGCTGAAGCTGATTCCTGA  846
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  TATCCTTACACCGTCGAGAAAAGAGCTGAAGCTGATTCCTGA  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41248996194


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5