BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42220.1
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483311 jgi|Araly1|483311|fgenesh2_kg.4__2371__AT2G42220.1 1238 0.0
> Ahg483311 jgi|Araly1|483311|fgenesh2_kg.4__2371__AT2G42220.1
Length=895
Score = 1238 bits (670), Expect = 0.0
Identities = 751/789 (95%), Gaps = 9/789 (1%)
Strand=Plus/Plus
Query 2 GTGGTTCTTGTCCAAGTAACTATCGCATCAC----AGTGA-CGAGtt-tttttCCTAGAG 55
||||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||
Sbjct 1 GTGGTTCTTGTCCAAGTAACTATCGCATCACAGTGAGTGACCGAGTTCTTTTTCC-AGAG 59
Query 56 ACCTCTGCTGCAATGGCGGGGATCATAAGCCCTAGCCCTACGGCTCTTTATTTCACCAGT 115
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ACCTCTGCAGCGATGGCGGGGATCATAAGCCCTAGCCCTACGGCTCTTTATTTCACCAGT 119
Query 116 AATGTCGGTGGGAGGCGACTGAAAGCAGTGAGCTGGGCGGGAAAGAGTGTCTCCGGGAAC 175
|||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 120 AATGTCGGCGGGAGGCGGTTGAAAGCGGTGAGCTGGGCGGGGAAGAGTGTCTCCGGGAAC 179
Query 176 GTTATCCGCCGGAGAAGCTTGAGAATTGCTGCGG-AGCTGAAATTCGTGAATGCAGAAGA 234
| ||||||||||||| |||||| ||||| |||| || ||||||||||||||||||||||
Sbjct 180 GCAATCCGCCGGAGAAACTTGAGGATTGCGGCGGAAG-TGAAATTCGTGAATGCAGAAGA 238
Query 235 AGCAAAACAGTTAATAGCTGAAGAAGGTTACTCGGTGGTGGATGTAAGAGACAAGACTCA 294
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGCAAAGCAGTTAATAGCTGAAGAAGGTTACTCGGTGGTGGATGTAAGAGACAAGACTCA 298
Query 295 ATTCGAGAGAGCTCATATAAAATCTTGCTCCCATATTCCTCTCTTCATTTACAACGAAGA 354
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 GTTCGAGAGAGCTCATATCAAATCTTGCTCCCATATCCCTCTCTTCATTTACAACGAAGA 358
Query 355 CAACGATATTGGCACGATCATAAAGAGGACAGTGCACAACAATTTCTCAGGGCTCTTCTT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CAACGATATTGGCACGATCATAAAGAGGACAGTGCACAACAATTTCTCAGGGCTCTTCTT 418
Query 415 TGGTTTACCTTTCACGAAAGTGAATCCGGAATTTCTTAAATCTGTTAGAAACGAGTTTTC 474
|||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 419 TGGTTTGCCTTTCACGAAAGTGAATCCGGACTTCCTTAAATCCGTTAGAAACGAGTTTTC 478
Query 475 TCAAGACAGCAAACTTTTACTTGTTTGCCAAGAAGGTCTCAGATCTGCAGCTGCAGCTAG 534
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCAAGACCGCAAACTTTTACTTGTTTGCCAAGAAGGTCTCAGATCTGCAGCTGCAGCTAG 538
Query 535 TAGATTGGAGGAAGCAGGTTACGAAAACATTGCTTGTGTAACATCAGGGCTACAATCTGT 594
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 539 TAGATTGGAGGAAGCAGGTTACGAAAACATCGCTTGTGTAACGTCAGGGCTACAATCTGT 598
Query 595 AAAACCAGGGACATTTGAATCCGTCGGTTCCACTGAGTTGCAGAATGCAGGCAAAGCAGG 654
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 599 AAAACCAGGGACATTTGAATCGGTTGGTTCCACCGAGTTGCAGAATGCAGGCAAAGCAGG 658
Query 655 GCTTATCACAATTCAAGGCAAGATCTCAGCAGTCTTAGGGACAGTACTCGTCTGTGCTTA 714
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 659 GCTTATCACAATTCAAGGCAAGATCTCAGCAGTCTTAGGAACAGTGCTCGTGTGTGCTTA 718
Query 715 TTTGTTCATACAGTTCTTCCCGGACCAAGCAGAGAAGCTCTTTCCTCCAACAAGCTAAGA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTGTTCATACAGTTCTTCCCGGACCAAGCAGAGAAGCTCTTTCCTCCAACAAGCTAAGA 778
Query 775 CAAGACAAA 783
|||||||||
Sbjct 779 CAAGACAAA 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35911787814
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5