BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42240.2
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935085 jgi|Araly1|935085|scaffold_403073.1 1349 0.0
> Ahg935085 jgi|Araly1|935085|scaffold_403073.1
Length=910
Score = 1349 bits (730), Expect = 0.0
Identities = 782/808 (97%), Gaps = 0/808 (0%)
Strand=Plus/Plus
Query 56 ACTATAATTTACCGGCGATGGTTCCTCCTCCGCCGCCGGGAGTTTCTCCGATTCCAATTA 115
|||||||| |||||||||| ||||||||||||| |||||| || |||||||||||||||
Sbjct 43 ACTATAATCTACCGGCGATTGTTCCTCCTCCGCAGCCGGGGGTGGCTCCGATTCCAATTA 102
Query 116 CTTCAGCTCATTCCGTCTATTTGCCTACCCATGTCTCAATTGGAGCTCGCGATGAGGTTA 175
|||| ||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 103 CTTCCGCTCATTCCGTTTTTTTGCCTACACATGTCTCAATCGGAGCTCGCGATGAGGTTC 162
Query 176 GGACGCTTTTCGTCGCCGGACTTCCTGAAGATGTCAAGCCTCGGGAGATCTACAATCTCT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GGACGCTTTTCGTCGCCGGACTTCCTGAAGATGTCAAGCCTCGGGAGATCTACAATCTCT 222
Query 236 TTCGTGAGTTCCCAGGATATGAGACTTCGCATCTCCGGAGCTCAGATGGAGCTAAGCCCT 295
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 223 TTCGTGAGTTCCCAGGATATGAGACTTCACATCTCCGGAGCTCAGATGGAGCTAAGCCCT 282
Query 296 TCGCATTTGCTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATG 355
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 TTGCATTTGCTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATG 342
Query 356 GAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCAAATCAAATC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 GAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCAAATCAAATC 402
Query 416 CCAAATCTAAGCGTTCAAGAACAGATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTT 475
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 403 CCAAATCTAAGCGTTCAAGAACAGATGATGGTTGGGAAAGCTTGAAAAAACCCAAGCCTT 462
Query 476 GGAACACTACTACTGAATCTGGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTG 535
||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 463 GGAGCACCACTACTGAATCTGGTTTTGGCAGCTTTCACACTCCTGGAATGAGTAGTTCTA 522
Query 536 CTTACAACACAATTGGTTATTCACCTGCACAAAGTCAAGGAATTGCTAATGTTGCTGGGA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CTTACAACACAATTGGTTATTCACCTGCACAAAGTCAAGGAATTGCTAATGTTGCTGGGA 582
Query 596 GGGCACCGACTTCTAGAAAACCTAGTAAGGCGGCAGATCCTTGTCCAACACTTTTCATAG 655
||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct 583 GGGCACCGACTACTAGAAAATCTAATAATGCGGCAGATCCTTGTCCAACACTTTTCATAG 642
Query 656 CGAATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGATGCCGTG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CGAATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGATGCCGTG 702
Query 716 GATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCC 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCC 762
Query 776 AGGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTTTACTCAT 835
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 763 AGGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAATGCTTTACTCAT 822
Query 836 CCCTCACTGGGGAAGTTTTGAGGCTGCA 863
||||||||||||||| ||||||||||||
Sbjct 823 CCCTCACTGGGGAAGGTTTGAGGCTGCA 850
Score = 80.5 bits (43), Expect = 2e-14
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 964 ATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAATTGATTAAGCTCTGAT 1021
||||||||||||||||||||||||||||| |||| |||| |||| ||||||| |||||
Sbjct 851 ATCACGGATGGGAATGCGTAAGAAGATTAGTTAGTGTTAAAATTCATTAAGCACTGAT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5