BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42250.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321905 jgi|Araly1|321905|fgenesh1_pm.C_scaffold_4001962 2527 0.0
Ahg892618 jgi|Araly1|892618|Al_scaffold_0006_614 76.8 5e-13
Ahg474180 jgi|Araly1|474180|fgenesh2_kg.1__4134__AT1G50560.1 60.2 5e-08
> Ahg321905 jgi|Araly1|321905|fgenesh1_pm.C_scaffold_4001962
Length=1545
Score = 2527 bits (1368), Expect = 0.0
Identities = 1488/1547 (96%), Gaps = 4/1547 (0%)
Strand=Plus/Plus
Query 141 ATGGATTTAAAACTAAACACTAAACTAATTATTCTCATCACATCCTTAGCTTT-TCCTTT 199
|||||| || ||||||||||||| || |||||||||||||||||||| | ||| | ||||
Sbjct 1 ATGGATCTAGAACTAAACACTAACCTTATTATTCTCATCACATCCTTCG-TTTCTGCTTT 59
Query 200 CATGCTTTATGCTCTCTTCAAATGGTTCTTGAAAGAGCAAGGTTCATTGGCTGCTACGAA 259
|||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 60 CATGCTTTATGCTCTCTTCAAATGGTTCTTGAGGGAGCAGGGTTCAATGGCTGCTACGAA 119
Query 260 GCTGCCACAGAGCCCTCCAGCTTTACCATTCATTGGCCACCTTCATTTGATAGGCAAAGT 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCTGCCACAGAGCCCTCCAGCTTTACCATTCATTGGCCACCTTCATTTGATAGGCAAAGT 179
Query 320 ATTGCCTGTCTCATTCCAAAGTTTAGCTCACAAGTATGGCCCACTCATGGAGATACGTCT 379
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTGCCTGTCTCATTCCAGGGTCTAGCTCACAAGTATGGCCCACTCATGGAGATACGTCT 239
Query 380 CGGTGCTTCTAAGTGCGTTGTGGTCTCAAGCTCTTCGGTGGCGAGAGAGATTTTCAAGGA 439
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 CGGTGCTTCTAAGTGCGTTGTGGTCTCAAGCTCTTCGGTGGCAAGAGAGATTTTCAAGGA 299
Query 440 GCAAGAGCTTAATTTCTCCTCGAGACCTGAGTTTGGTTCTGCAGAGTATTTCAAGTATAG 499
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 300 GCAAGAGCTTAATTTCTCCTCGAGACCTGAGTTTGGATCTGCTGAGTATTTCAAGTATAG 359
Query 500 AGGGTCCAGGTTTGTCCTTGCGCAGTATGGAGATTACTGGAGGTTCATGAAGAAGCTGTG 559
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 360 AGGGTCCAGGTTTGTCCTTGCGCAGTATGGAGATTATTGGAGGTTCATGAAGAAACTGTG 419
Query 560 CATGACTAAGCTTCTTGCTGTTCCACAGCTGGAGAAATTCGCTGACATCCGTGAGGAGGA 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CATGACTAAGCTTCTTGCTGTTCCACAGCTGGAGAAATTCGCTGACATCCGTGAGGAGGA 479
Query 620 GAAACTGAAGCTGGTCGATTCTGTGGCTAAGTGTTGCAGAGAAGGGTTGCCTTGTGACTT 679
||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 480 GAAACTGAAGCTGATCGAGTCTGTGGCTAACTGTTGCGGAGAAGGGTTGCCTTGTGACTT 539
Query 680 GAGTAGCCAGTTCATAAAATACACCAACAATGTAATCTGCAGGATGGCGATGAGCACCAG 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 GAGTAGCCAGTTCATAAAATACACCAACAATGTAATCTGCAGGATGGCGATGAGCACGAG 599
Query 740 GTGTTCAGGTACTGATAATGAAGCAGAAGAGATAAGGGAGCTGGTGAAGAAAAGTTTGGA 799
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 600 GTGTTCAGGTACTGATAATGAAGCGGAAGAGATAAGGAAGCTGGTGAAGAAAAGTTTGGA 659
Query 800 GCTTGCGGGGAAGATCAGTGTAGGAGATGTGTTGGGGCCATTGAAAGTAATGGACTTTTC 859
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 660 GCTTGCGGGGAAGATCAGTGTAGGAGATGTGTTGGGGCCATTGAAAGTACTGGATTTTTC 719
Query 860 TGGGAACGGGAAGAAGTTAGTGGCTGTAATGGAGAAATATGACCTGCTTGTAGAGAGAAT 919
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TGGGAACGGGAAGAAATTAGAGGCTGTAATGGAGAAATATGACCTGCTTGTAGAGAGGAT 779
Query 920 TATGAAGGAACGTGAGGCAAAGGCAAAGAAGAAAGATGGTACCAGAAAGGATATTTTGGA 979
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TATGAAGGAACGTGAGGCAGAGGCAAAGAAGAAAGATGGTACCAGAAAGGATATTTTGGA 839
Query 980 TATATTGTTGGAAACTTACAGAGATCCCACTGCTGAAATGAAGATAACGAGGAATGACAT 1039
|||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 TATACTGTTGGATACTTACAGAGATCCCACTGCTGAAATGAAGATAACAAGGAATGACAT 899
Query 1040 GAAATCTTTCCTGCTGGATGTTTTCATGGCGGGAACAGATACATCAGCAGCAGCAATGCA 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAAATCTTTCCTGCTGGATGTTTTCATGGCGGGAACAGATACATCAGCAGCAGCAATGCA 959
Query 1100 GTGGGCAATGGGGCAACTAATAAACCATCCACAAGCGTTCAACAAGTTACGAGAAGAGAT 1159
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 GTGGGCAATGGGGCAACTAATAAACCATCCACAAGCGTTCAACAAGTTAAGAGAAGAGAT 1019
Query 1160 CAATAACGTTGTTGGAAGTAAAAGACTGGTGAAAGAATCAGATGTTCCTAACCTTCCTTA 1219
||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1020 CAATACCGTAGTTGGAAGTAAAAGACTGGTCAAAGAATCAGACGTTCCTAACCTACCTTA 1079
Query 1220 CCTCCGAGCTGTCCTAAGGGAAACTCTGAGGCTCCACCCTTCAGCTCCTCTGATCATAAG 1279
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCTCCGAGCCGTCCTAAGGGAAACTCTGAGGCTCCACCCTTCAGCTCCTCTGATCATAAG 1139
Query 1280 AGAATGCGCAGAAGACTGCCAGGTGAACGGGTGCCTTGTCAAGTCAAAAACCCGTGTACT 1339
||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 1140 AGAATGCGCAGAAGACTGCCAGGTGCATGGGTGCCTTGTCAAGTCAAAAACACGTGTACT 1199
Query 1340 CGTAAATGTTTATGCAATCATGCGAGATTCAGAACTATGGGCAGATGCAGACAGATTCAT 1399
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1200 CGTAAATGTTTATGCAATCATGCGAGATTCAGAACTATGGACAGATGCAGACAGATTCAT 1259
Query 1400 CCCCGAGAGATTTCTAGAGAGCTCTGAAGAGAAGATAGGTGAACACCAGATGCAGTTCAA 1459
||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1260 CCCGGAGAGATTTCTAGAGAGCTCTGAAGAGAAGATAGGGGAACACCAGATGGAGTTCAA 1319
Query 1460 GGGGCAGAATTTCCGTTACCTTCCATTTGGGAGTGGAAGGAGAGGATGTCCAGGAGCATC 1519
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1320 GGGGCAGAATTTCCGTTACCTTCCGTTTGGGAGTGGAAGAAGAGGATGTCCAGGAGCATC 1379
Query 1520 CCTTGCCATGAATGTGATGCATATAGGTGTGGGTTCATTGGTGCAGCGCTTCGACTGGAA 1579
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CCTGGCCATGAATGTGATGCATATAGGTGTGGGTTCATTGGTGCAGCGCTTCGACTGGAA 1439
Query 1580 GAGTGTTGATGGACAGAAGGTCGATCTGAGCCAAGGTTCTGGTTTTTCTGCTGAGATGGC 1639
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GAGTGTTGATGGACAGAAGGTTGATCTGAGCCAAGGTTCTGGTTTTTCTGCTGAGATGGC 1499
Query 1640 TCGACCACTTGTGTGCAATC-CTGTGGATCACTTTAACACCTTCTAA 1685
|||||||| ||||||||| | |||| ||||||||||| |||||||||
Sbjct 1500 TCGACCACCTGTGTGCAA-CACTGTTGATCACTTTAAAACCTTCTAA 1545
> Ahg892618 jgi|Araly1|892618|Al_scaffold_0006_614
Length=1578
Score = 76.8 bits (41), Expect = 5e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 525 TATGGAGATTACTGGAGGTTCATGAAGAAGCTGTGCATGACTAAGCT 571
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 367 TATGGACCTTACTGGAGGTTCATGAAGAAGCTGTGCATGACTAAGCT 413
> Ahg474180 jgi|Araly1|474180|fgenesh2_kg.1__4134__AT1G50560.1
Length=1699
Score = 60.2 bits (32), Expect = 5e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 525 TATGGAGATTACTGGAGGTTCATGAAGAAGCT 556
||||||||||||||||||||||||||||||||
Sbjct 413 TATGGAGATTACTGGAGGTTCATGAAGAAGCT 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5