BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42260.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321906 jgi|Araly1|321906|fgenesh1_pm.C_scaffold_4001963 1221 0.0
> Ahg321906 jgi|Araly1|321906|fgenesh1_pm.C_scaffold_4001963
Length=777
Score = 1221 bits (661), Expect = 0.0
Identities = 743/782 (95%), Gaps = 7/782 (1%)
Strand=Plus/Plus
Query 140 ATGCCAGAAGCACGAGATCGAATAGAGAGGCAAGTTGATTACCCAGCCGCATTTCTCAAT 199
|||||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1 ATGCCAGAAGCAAGAGACCGAATAGAGAGACCAGTTGATTACCCAGCCGCATTTCTCAAT 60
Query 200 AGACGCTCGCATGGTATTTTACTTGACGAACCAGCAACACAGCACAATTTGTTTGGGTCT 259
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AGACGCTCGCATGGTATTTTACTTGACGAACCAGCAACACACCACAATTTGTTTGGGTCT 120
Query 260 CCGGTTCAGAGAGTGCCATCGGAAGCTACAGGAGGACTTGGGTCAATTGGTCAAGGATCT 319
||||||||||||||||| || ||||||||| | || ||||||||| ||||||||||||||
Sbjct 121 CCGGTTCAGAGAGTGCCGTCCGAAGCTACA-G-GG-CTTGGGTCAGTTGGTCAAGGATCT 177
Query 320 ATGACGGGAAGAGGTGGGCTTGTGAGGGGTAATTTCGGTATTCGGCGGACTGGTGGTGGT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATGACGGGAAGAGGTGGGCTTGTGAGGGGTAATTTCGGTATTCGGCGGACTGGTGGTGGT 237
Query 380 AGAAGAGGTCAAATTCAATTTAGATCGCCACAGGGACGAGAGAACATGAGCTTGGGTGTT 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGAAGAGGTCAAATTCAATTTAGATCGCCACAGGGACGAGAGAACATGAGCTTGGGTGTT 297
Query 440 ACAAGGCGTGGAAGGGCTCGTGCTTCAAATTCTGTCTTACCTTCTTGGTATCCAAGAACG 499
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 ACAAGACGTGGAAGGGCTCGTGCTTCAAATTCTGTGTTACCTTCTTGGTATCCAAGAACG 357
Query 500 CCCCTCCGTGATATTTCTGCCGTTGTTAGGGCTATTGAGAGAAGGAGAGCTCGTATGGGA 559
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCCCTCCGTGATGTTTCTGCTGTTGTTAGGGCTATTGAGAGAAGGAGAGCTCGTATGGGA 417
Query 560 GAAGGTGTTGGCCGAGATATTGAGACCCCAACTCCACAACAACTTGGGGTTCTTGATTCT 619
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 GAAGGCGTTGGCCGAGATATTGAGACCCCAACTCCACAACAGCTTGGGGTTCTTGATTCT 477
Query 620 CTAGTACCG-TTGTCAGGTGCTCATCTCGAGCACGACTATTCTATGGTTACTCCCGGTCC 678
|||||||| || ||||||||||| |||||||| || || |||||||||||||| |||||
Sbjct 478 CTAGTACCACTT-TCAGGTGCTCAGCTCGAGCATGATTACTCTATGGTTACTCCTGGTCC 536
Query 679 ATCTATTGGATTCAAGCGTCCTTGGCCACCCTCAACTGCTAAAGTCCATCAGATTTTGCT 738
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 537 ATCTGTTGGATTCAAGCGTCCCTGGCCACCCTCAACTGCTAAAGTCCATCAGATTCTGCT 596
Query 739 CGACATCACAAGAGAAAACACAGGGGAAGAAGATGCCCTCACTCCAGAGAAGAAGCTCCT 798
||| ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 597 CGATATCACAAGAGAGAATACAGGGGAAGAAGATGCCCTCACTCCACAGAAGAAGCTCCT 656
Query 799 CAACTCTATTGATAAAGTGGAGAAGGTTGTGATGGAAGAGATTCAGAAAATGAAGAGCAC 858
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CAACTCTATTGACAAAGTGGAGAAGGTTGTGATGGAAGAGATTCAGAAAATGAAGAGCAC 716
Query 859 TCCTAGTGCTAAA-AGAGCAGAAAGGGAGAAAAGAGTTAGGACGCTAATGTCGATGCGAT 917
||||||||| ||| |||||||||||||||||||| ||| ||||| ||||||| |||||||
Sbjct 717 TCCTAGTGC-AAAGAGAGCAGAAAGGGAGAAAAGGGTTCGGACGTTAATGTCAATGCGAT 775
Query 918 GA 919
||
Sbjct 776 GA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5