BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42280.1
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935089 jgi|Araly1|935089|scaffold_403077.1 1781 0.0
> Ahg935089 jgi|Araly1|935089|scaffold_403077.1
Length=1124
Score = 1781 bits (964), Expect = 0.0
Identities = 1057/1103 (96%), Gaps = 2/1103 (0%)
Strand=Plus/Plus
Query 354 TTAATGGATTCAAATAATCATCTCTACGACCCGAATCCCACCGGGTCGGGTCTTCTTCGT 413
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 21 TTAATGGATTCAAATAATCATCTCTACGACCCGAATCACACCGGGTCGGGTCTTCTTCGT 80
Query 414 TTTAGATCAGCTCCGAGCTCTGTTCTCGCCGCTTTTGTTGACGACGACAAGATTGGTTTC 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 81 TTTAGATCAGCTCCGAGCTCTGTTCTCGCCGCTTTTGTTGACGACGACAAGATTGGATTC 140
Query 474 GACTCCGATAGGTTGCTTTCAAGATTCGTGACCTCTAATGGCGTTAACGGA-GATCTGGG 532
||||||||||||||||||||||||||||| | |||||||||||| ||| || ||||||||
Sbjct 141 GACTCCGATAGGTTGCTTTCAAGATTCGTTAGCTCTAATGGCGTAAAC-GACGATCTGGG 199
Query 533 TTCACCTAAATTCGAGGATAAGTCTCCGGTTTCGTTAACGAACACCTCTGTTTCATACGC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TTCACCTAAATTCGAGGATAAGTCTCCGGTTTCGTTAACGAACACCTCTGTTTCATACGC 259
Query 593 CGCCACTCTGCCGCCACCGCCGCAGCTTGAGCCGTCGAGTTTTCTGGGTTTGCCGCCGCA 652
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CGCCACTCTGCCGCCGCCACCGCAGCTTGAGCCGTCGAGTTTTCTGGGTTTGCCGCCGCA 319
Query 653 TTACCCGAGGCAGAGTAAAGGGATAATGAACTCGGTTGGTTTGGATCAGTTTCTCGGTAT 712
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 320 TTACCCGAGGCAGAGTAAAGGGATGATGAACTCGGTTGGTTTGGATCAGTTTCTGGGTAT 379
Query 713 CAATAATCATCACACCAAACCAGTTGAATCTAATCTTCTCCGTCAAAGCAGCTCTCCAGC 772
||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 380 GAATAATCATTACACCAAACCAGTTGAATCCAATCTTCTCCGGCAAAGCAGCTCGCCCGC 439
Query 773 CGGAATGTTTACTAATCTCTCTGACCAAAACGGTTATGGTTCAATGAGGAATTTGATGAA 832
||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 440 CGGAATGTTCACTAACCTCTCTGACCAAAACGGTTATGGTTCAATGAGGAATATGATGAA 499
Query 833 TTACGAAGAAGATGAAGAGAGTCCATCTAATTCCAATGGATTAAGACGCCATTGCAGTCT 892
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 500 TTACGAAGAAGATGAAGAGAGTCCATCTAACTCCAACGGATTAAGACGCCATTGCAGCCT 559
Query 893 CTCTTCAAGGCCACCTTCTTCACTTGGAATGCTTTCTCAAATACCTGAAATCGCACCCGA 952
|||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 560 CTCTTCAAGGCCACCTCCTTCACTGGGAATGCTCTCTCAAATACCTGAAATCGCACCCGA 619
Query 953 AACTAATTTTCCATATAGCCATTGGAATGATCCATCCAGCTTTATTGATAACTTATCCTC 1012
||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 620 AACGAATTTTCAATATAGCCATTGGAATGATCCATCCAACTTCATTGATAACTTATCCTC 679
Query 1013 ACTTAAAAGAGAAGCCGAGGACGATGGAAAATTGTTTCTCGGAGCTCAGAACGGAGAGTC 1072
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CCTTAAAAGAGAAACAGAGGACGATGGAAAATTGTTTCTCGGAGCTCAGAACGGAGAGTC 739
Query 1073 CGGGAATCGTATGCAGTTACTGTCGCATCATTTGAGCCTACCAAAGTCATCATCGACAGC 1132
|||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||
Sbjct 740 CGGGAATCGTATGCAGTTACTGTCGCATCATTTGAGTCTACCCAAGTCCTCATCAACAGC 799
Query 1133 CTCGGACATGGTTTCAGTGGATAAGTATCTTCAGCTACAAGATTCTGTTCCTTGTAAAAT 1192
||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||
Sbjct 800 GTCGGACATGGTTTCAGTAGATAAGTATCTTCAGTTGCAAGATTCTGTTCCTTGTAAAAT 859
Query 1193 CAGAGCCAAACGTGGTTGCGCTACACATCCTCGAAGCATCGCTGAACGGGTAAGAAGAAC 1252
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 TAGAGCCAAACGTGGTTGCGCTACACATCCTCGAAGCATCGCTGAACGGGTAAGAAGAAC 919
Query 1253 GCGGATAAGCGAGCGAATGAGGAAGTTACAAGAGCTTGTTCCTAACATGGACAAGCAAAC 1312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 920 GCGGATAAGCGAGCGAATGAGGAAATTACAAGAGCTTGTTCCTAACATGGACAAGCAAAC 979
Query 1313 CAACACTTCGGATATGTTGGATTTAGCTGTGGATTACATCAAAGATTTACAAAGACAGTA 1372
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 980 GAACACTTCGGATATGTTGGATTTAGCAGTGGATTACATCAAAGATTTACAAAGACAGTA 1039
Query 1373 TAAGATTTTAAACGACAACAGAGCTAACTGTAAGTGTATGAACAAGGAGAAGAAGTCAAT 1432
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1040 TAAGATTTTAAACGACAACAGAGCTAACTGCAAGTGTATGAACAAGGAGAAGAAGTCAAT 1099
Query 1433 ATAGGGCGCAACAAAGTGTGTAG 1455
|||||||||||||||||||||||
Sbjct 1100 ATAGGGCGCAACAAAGTGTGTAG 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62963174985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5