BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42290.1
Length=2213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483320 jgi|Araly1|483320|fgenesh2_kg.4__2380__AT2G42290.1 3144 0.0
Ahg486237 jgi|Araly1|486237|fgenesh2_kg.5__2229__AT3G57830.1 1094 0.0
> Ahg483320 jgi|Araly1|483320|fgenesh2_kg.4__2380__AT2G42290.1
Length=2144
Score = 3144 bits (1702), Expect = 0.0
Identities = 2008/2154 (93%), Gaps = 28/2154 (1%)
Strand=Plus/Plus
Query 1 CTTCACTGTTTACCGTTTTTCCTCTGCAACTTCTCGTTGCCTCACACTATATGAATCATC 60
|||||||||||| ||||||||||| |||||||||||||| || |||||||||||| ||
Sbjct 1 CTTCACTGTTTATCGTTTTTCCTCGGCAACTTCTCGTTG-CT-TCACTATATGAATGATT 58
Query 61 TGTAATTTGTAGCTTCTTTAACAACCAAAAAG-TTTCAAGATTCCTATATCCTAAGC-AA 118
|||||||||||||||||||||||| | ||||| ||||||||||| ||||| |||| | ||
Sbjct 59 TGTAATTTGTAGCTTCTTTAACAAAC-AAAAGATTTCAAGATTCGTATATACTAACCAAA 117
Query 119 AAAATGAAGTTACCATCGATTCTT-TCACTTGTTGTTTCTTCCATCTTTCTCTGCATGAG 177
||||||||||||| | |||| || |||||| ||||||||||||||||||||||||| ||
Sbjct 118 AAAATGAAGTTACTTTGGATT-TTCTCACTTCTTGTTTCTTCCATCTTTCTCTGCATTAG 176
Query 178 CTTTTGCTCCTCTCTCAATTCCGACGGTTTATCTCTCCTAGCTCTCAAATCCGCCGTCGA 237
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 177 CTTTTGCTCTTCTCTCAATTCCGACGGTTTATCTCTACTAGCTCTAAAATCCGCCGTCGA 236
Query 238 TAACGACCCGACCCGAGTAATGACCCACTGGTCTGAATCCGACCCGACTCCTTGCCATTG 297
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 237 TAACGACCCGACCCGAGTAATGACTCACTGGTCTGAATCCGACCCGACTCCTTGCCATTG 296
Query 298 GTCCGGAATCGTCTGCACAAACGGCCGAGTCACAACTCTTGTACTCTTCG-GAAAAAGTC 356
|||||||||||| |||||||| ||||||||||| | ||||| ||||||| | |||||||
Sbjct 297 GTCCGGAATCGTTTGCACAAAGGGCCGAGTCACTTCACTTGTCCTCTTCGCG-AAAAGTC 355
Query 357 TCTCCGGTTACATTCCATCAGAACTCGGTTTACTCAACTCGCTAAACCGGCTTGATCTAG 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 356 TCTCCGGTTACATTCCATCAGAACTCGGTTTACTCAACTCGCTTAACCGGCTTGATCTAG 415
Query 417 CTCACAACAATTTCTCTAAAACCATACCGGTTCGTCTCTTCGAAGCAACCAAGCTCCGGT 476
|||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||
Sbjct 416 CTCACAACAATTTCTCCAAAACCGTACCGGTTCGACTCTTCGAAGCAACCAAGCTCCGGT 475
Query 477 ACATCGATCTCTCTCACAACTCACTCTCCGGCCCAATACCGGCCCAAATCAAGTCCATGA 536
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 476 ACATCGATCTCTCTCACAACTCACTCTCCGGCCCAATTCCGGCCCAAATCAAATCCATGA 535
Query 537 AGTCACTCAACCACCTTGATTTCTCCTCCAATCATCTCAACGGTTCACTCCCTGAGTCAC 596
| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 536 AATCACTCAACCACCTTGATATCTCCTCCAATCATCTCAACGGGTCACTCCCTGAGTCAC 595
Query 597 TCACTGAACTCGGAAGCCTCGTCGGAACCTTGAATTTCTCTTTCAACCAATTCACCGGCG 656
| | | | |||||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 596 T--C-G-A-----AAGCCTCGTCGGAACCTTAAATCTCTCTTTTAACCAATTCACCGGCG 646
Query 657 AGATTCCACCGTCGTACGGTCGATTTCGAGTTCACGTCAGCTTAGATTTTAGTCACAACA 716
||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||
Sbjct 647 AGATTCCACCGTCGTACGGTCGATTTCCAGCTCACGTAAGCTTAGATTTTAGTCAAAACA 706
Query 717 ATCTCACCGGAAAAGTACCTCAGGTGGGATCTCTGTTGAATCAAGGACCAAACGCATTCG 776
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 707 ATCTCACCGGAAAAGTACCTCAGGTGGGATCTCTGTTGAACCAAGGACCAAACGCATTCG 766
Query 777 CTGGAAACTCTCATCTCTGTGGCTTCCCATTGCAAACGCCGTGTGAAAAAATCAAAACCC 836
||||||||| ||||||||||||||| ||||||||||| ||||| ||| ||||| ||||||
Sbjct 767 CTGGAAACTATCATCTCTGTGGCTTTCCATTGCAAACACCGTGCGAAGAAATCGAAACCC 826
Query 837 CAAATTTCGTCGCTGCAAAGCCGGAAGGTACTCAAGAACTCCAGAAACCAAACCCTAGTG 896
| ||||||| | |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 827 CTAATTTCGCCAATGCAAAGCCGGAGGGAACTCAAGAACTCCAGAAACCAAACCCTAGTC 886
Query 897 TAATCAGCAATGACGACGCAAAGGAGAAGAAGCAGCAGATCACCGGTTCAGTAACCGTTT 956
||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || |
Sbjct 887 TAATCAGCAATGACGACGCAAAGCAGAAGAAGCAGCAGATCACCGGATCAGTAACAGTGT 946
Query 957 CTCTGATTTCTGGAGTTTCGGTTGTAATCGGAGCTGTTTCTCTCTCTGTATGG---CTGA 1013
|| ||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||
Sbjct 947 CTTTGATTTCTGGAGTATCGGTTGTAATCGGAGCTGTTTCTGTCTCGGTATGGCTTCTGA 1006
Query 1014 TCCGGAGAAAACGAAGCTCCGATGGGTACAATTCGGAGACAAAGACGACGACGGTGGTTT 1073
|||||||||||||||||||| | |||||||| |||||||| |||||||||||||||||||
Sbjct 1007 TCCGGAGAAAACGAAGCTCCAACGGGTACAAATCGGAGACGAAGACGACGACGGTGGTTT 1066
Query 1074 CAGAGTTCGACGAAGAAGGGCAAGAAGGTAAATTCGTAGCGTTTGATGAAGGATTCGAGC 1133
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1067 CAGAGTTTGACGAAGAAGGGCAAGAAGGTAAATTCGTAGCGTTTGACGAAGGATTCGAGC 1126
Query 1134 TTGAGCTTGAGGATTTGCTGAGAGCATCGGCTTACGTGATAGGCAAGAGCAGAAGCGGGA 1193
| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1127 TCGAGCTTGAGGATTTGCTGGGAGCATCGGCTTACGTGATAGGCAAGAGCAGAAGTGGGA 1186
Query 1194 TTGTGTATAGAGTAGTGGCGGCGGAATCGTCCTCCACCGTTGTCGCCGTTAGAAGGCTCA 1253
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1187 TTGTGTACAGAGTAGTGGCGGCGGAATCGTCCTCCACTGTTGTCGCCGTTAGAAGGCTCA 1246
Query 1254 GCGACGGCAATGAC-ACGTGGCGATTTAAGGATTTTGTGAATGAAGTTGAGAGCATTGGT 1312
||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1247 ACGACGGCGATG-CTACGTGGCGGTTTAAGGATTTTGTGAATGAAGTTGAGAGCATTGGT 1305
Query 1313 AGGATCAATCATCCTAACATTGTACGGCTAAGAGCTTACTACTATGCAGAGGACGAGAAG 1372
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1306 AGGATCAATCACCCTAACATCGTACGGCTTAGAGCTTACTACTATGCAGAGGACGAGAAG 1365
Query 1373 CTTCTCATCACTGATTTCATTAACAATGGCAGCTTGTACTCTGCCTTACATGGTGGACCT 1432
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1366 CTTCTCATCACTGATTTCATTAGCAATGGCAGCTTGTACTCTGCCTTACATGGTGGACCT 1425
Query 1433 TCGAATACTCGGCCTACACTCTCTTGGGCTGAGAGGTTATGTATAGCTCAAGGGACTGCT 1492
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1426 TTGAATACTCGGCCTACACTCTCTTGGGCTGAGAGGTTATGTATAGCTCAAGGAACTGCT 1485
Query 1493 CGGGGTTTGATGTATATACATGAATACAGTTCGAGAAAGTATGTTCACGGCAACCTAAAA 1552
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1486 CGGGGTTTGATGTATATACATGAATACAGTTCGAGAAAGTATGTACACGGCAACCTAAAA 1545
Query 1553 TCAAGCAAAATCCTGTTAGATAATGAGCTGCATCCTCACGTCTCAGGATTTGGTCTCACA 1612
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1546 TCAAGCAAAATCCTGTTAGATAATGAGCTGCATCCTCACATCTCAGGATTTGGTCTCACA 1605
Query 1613 CGACTGGTTTCCGGCTATCCCAAAG-TCACTGACCATTCACTATCATCCATGACGCAAAG 1671
|| ||||||||||| |||||||||| | | ||| ||||||| |||| ||| ||||||||
Sbjct 1606 CGTCTGGTTTCCGGTTATCCCAAAGTTGA-TGATCATTCACCATCAACCAAAACGCAAAG 1664
Query 1672 TATAGACCAAGGATTTGCCACAAGACTCTCAGTCTCAGCTCCTGCAGCTGCTTACCTTGC 1731
| |||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1665 CAAAGACCAAGCATTTGCCACAAGGCTCTCAGTCTCAGCTCCTGCAGCTGTTTACCTTGC 1724
Query 1732 ACCCGAAGCCCGAGCTTCTTCTGATTGCAAATTATCTCACAAATGCGATGTTTATTCTTT 1791
|||||||||||||| ||| |||| |||||||| || ||| ||||||||||||||||| ||
Sbjct 1725 ACCCGAAGCCCGAGTTTCATCTGGTTGCAAATCATTTCAGAAATGCGATGTTTATTCATT 1784
Query 1792 TGGTGTGATTCTATTGGAGCTGTTGACTGGTCGATTACCTTATGGTTCCTCTGAAAACGA 1851
||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1785 TGGGGTGATTCTATTGGAGTTGTTGACTGGTCGATTACCTAATGGTTCCTCTGAAAACGA 1844
Query 1852 AGGAGAAGAAGAACTCGTGAATGTTTTGAGGAAGTGGCACAAGGAAGAGAGATCTTTGGC 1911
| | | ||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1845 A-G-G-AGAAGAACTCGTGAATGTTTTGAGGAATTGGCACAAGGAAGAGAGATCGTTGGC 1901
Query 1912 TGAGATCTTAGACCCAAAGCTTCTGAAACAGGATTTTGCGAATAAGCAGGTTATTGCAAC 1971
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1902 TGAGATCTTAGACCCAAAGCTTCTGAAACAGGATTTTGCGGATAAGCAGGTTATTGCAAC 1961
Query 1972 CATCCATGTCGCTTTAAACTGCACGGAAATGGATCCAGATATGCGTCCTAGGATGAGATC 2031
||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 CATTCATGTCGGTTTGAACTGCACGGAAATGGATCCAGATATGCGTCCTAGGATGAGATC 2021
Query 2032 TGTGTCTGAAATTCTAGGTCGGATCAAATAGGAATTAACCACTTCTTAAAGAGCCGGGAT 2091
||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||
Sbjct 2022 TGTGTCTGAAATTCTAGGTCGGATCAAATAGGAATAAACCTCTTTTTAAAGAGCCGGGAA 2081
Query 2092 TAATTAGTTGTGTATGTATTAGTCTCAGGCTAAGTGGAGTTTTGTAGTTTCTAT 2145
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2082 TAATTAGTTGTGTATGTGTTAGTCTCAGGCTAAGTGGAGTTTTGTAGTTTCTAT 2135
> Ahg486237 jgi|Araly1|486237|fgenesh2_kg.5__2229__AT3G57830.1
Length=2401
Score = 1094 bits (592), Expect = 0.0
Identities = 1599/2061 (78%), Gaps = 166/2061 (8%)
Strand=Plus/Plus
Query 93 TTTCAAGATTCCTATATCCTAAGCA-AAAAATGAAGTTACCATCGA-TTCTTTCACTTGT 150
|||||||||| || || || || ||||||| |||| | |||| ||||||||||| |
Sbjct 183 TTTCAAGATT-CT-GATTCTCTCCAGAAAAATGCAGTT-TCTTCGACTTCTTTCACTTCT 239
Query 151 TGTTTCTTCCAT-CTT-T-C-TCTGCATGAGCTTTTGCTCCTCTCTCAATTCCGACGGTT 206
|||||||| | ||| | | ||| ||| ||||| | ||| || || | | |||| ||||
Sbjct 240 CCTTTCTTCC-TACTTGTCCTTCTTCATTAGCTTCTCCTCGTCGCTGAGTCCCGATGGTT 298
Query 207 TATCTCTCCTAGCTCTCAAATCCGCCGTCGATAACGACCCGACCCGAGTAATGAC-CCAC 265
|||| || || ||||||||||||||| || ||| |||||||| || || ||||| | |
Sbjct 299 TATCACTTCTTGCTCTCAAATCCGCCATCTTTAAAGACCCGACACGTGTGATGACTTC-C 357
Query 266 TGGTCTGAATCCGACCCGACTCCTTGCCATTGGTCC-GGAATCGTCTGCACAAACGGCCG 324
||||| ||||||||||||||||| || || ||| || |||||| ||||||| |||||||
Sbjct 358 TGGTCCGAATCCGACCCGACTCCGTGTCACTGG-CCTGGAATCATCTGCACTCACGGCCG 416
Query 325 AGTCACAACTCTTGTACTCTT-CGGAAAAAGTCTCTCCGGTTACATTCCATCAGAACTCG 383
|||||| | || || || || ||||| ||| || || |||||||| || || ||||| |
Sbjct 417 AGTCACCTCACTCGTTCT-TTCCGGAAGAAGACTATCAGGTTACATACCCTCCGAACTTG 475
Query 384 GTTTACTCAACTCGCT-A-AACCGGCTTGATCTAGCTCACAACAATTTCTCTAAAACCA- 440
|||||||| |||| || | || || || || |||| |||||||||||| |||||||
Sbjct 476 GTTTACTCGACTCACTCATAA--AACTCGACCTTGCTCGCAACAATTTCTC-AAAACCAG 532
Query 441 TACCGGTTCGTCTCTTCGAA-GCAACCAAGCTCCGGTACATCGATCTCTCTCACAACTCA 499
| || |||||||||| || || || ||||| ||||| ||||||||||||||||||
Sbjct 533 TTCCTACTCGTCTCTTC-AACGCCGTTAATCTCCGTTACATTGATCTCTCTCACAACTCA 591
Query 500 CTCTCCGGCCCAATACCGGCCCAAAT-CAAGTCCATGAAGTCA-CTCAAC-CACCTTGAT 556
||||||||||||| ||||||||||| ||| ||||| ||| | ||| || ||| |||||
Sbjct 592 ATCTCCGGCCCAATTCCGGCCCAAATCCAA-TCCATCAAG-AATCTC-ACTCACATTGAT 648
Query 557 TTCTCCTCCAATCAT-CTCAACGGTTCACTCCCTGAGTCACTCACTGAACTCGGAAGCCT 615
||||||||||||| | |||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 649 TTCTCCTCCAATC-TCCTCAACGGGTCACTCCCTGAGTCACTCACTCTACTCGGAAGCTT 707
Query 616 CGTCGGAAC-CTTGAATTTCTCTTTCAACCA-ATTCACCGGCGAGATTCCACCGTCGTAC 673
||||| || | | ||| |||||| ||| || |||| ||||||| || || ||||||||
Sbjct 708 AGTCGGCACAC-TCAATCTCTCTTACAA-CAGATTCTCCGGCGAAATCCCGCCGTCGTAT 765
Query 674 GGTCGATTT-CGAGTTCACGTCAGCTTAGATTTTAGTCACAACAATCTCACCGGAAAAGT 732
|| || ||| || ||| ||||||||| ||| | | ||||| ||||||||||||||| |
Sbjct 766 GGACGGTTTCCG-GTTTTCGTCAGCTTGGATCTCGGCCACAATAATCTCACCGGAAAAAT 824
Query 733 ACCTCAGGTGGGATCTCTGTTGAATCAAGGACCAAACGCATTCGCTGGAAACTCTCATCT 792
||||||| | || ||||| || || |||||||||| ||| ||||| ||||||||| ||||
Sbjct 825 ACCTCAGATTGGCTCTCTCTTAAACCAAGGACCAACCGCGTTCGCCGGAAACTCTGATCT 884
Query 793 CTGTGGCTTCCCATTGCAAACGCCGTGTGAAA-AA-AT-C-A-AAACCCCAAATTTCGTC 847
|||||| |||||||| |||| || ||| ||| || || | | ||| || || |||||
Sbjct 885 CTGTGGTTTCCCATTACAAAAGCTATGT-AAAGAAGATACTACAAA-TCCTAAGCTCGTC 942
Query 848 GCTGCAAAGCCGGAAGGTACTCA-AGAA--CT-CC--AGAAACCAAACCCTAG-TGTAAT 900
||| |||| || ||||| |||| | || || || ||| |||||||||||| | | ||
Sbjct 943 GCTCCAAAACCTGAAGG--CTCACA-AATCCTCCCGAAGAGACCAAACCCTAGCT-TCAT 998
Query 901 CAG-CAATGACGACGCAAAGGAGAAGAAGCAGCAGATCACCGGTTCAGTAACCGTTTCTC 959
| | ||| | |||| || || ||||| | | || |||||| |||||||| || ||||
Sbjct 999 C-GACAA-G--GACG-GAA-GA-AAGAATAAACCGACCACCGGATCAGTAACGGTATCTC 1051
Query 960 TGATTTCTGGAGTTTCGGTTGTAATCGGAGCTGTTTCTCTCTCTGTATGGCTGATCCGGA 1019
| || || ||||| | | |||||||||||||||||| |||| ||||||||||| | ||
Sbjct 1052 TCATCTCCGGAGTCCCAATCGTAATCGGAGCTGTTTCTATCTCCGTATGGCTGATTC-GA 1110
Query 1020 GAAAACGAAGCTCCGATGGGTACAATTCGGAGACAAAG-ACGACGACGGTG-GTTTCAGA 1077
| || || | || | ||| ||||||| |||| || ||| ||| | || |
Sbjct 1111 -AGAA--AA--T----TGAG--CAAATCGGAGAGAAAGAAC-ACGGCGGCGCCATT--G- 1155
Query 1078 GTTCGACGAAGAAGG-GCAAGAAGGTAAATTCGTAGCGTTTGATGAAGGATTCGAGCTTG 1136
| | || | || ||| ||| ||||||||||| || | | | || |||||||||||||| |
Sbjct 1156 GAT-GATG-AGGAGGAGCAGGAAGGTAAATTTGTGGTGATGGACGAAGGATTCGAGCTCG 1213
Query 1137 AGCTTGAGGATTTGCTGAGAGCATCGGCTTACGT-GATAGGCAAGAGCAGAAGCGGGATT 1195
|||| ||||||||||||||||||||||||||||| | | || ||||||||||| ||||||
Sbjct 1214 AGCTCGAGGATTTGCTGAGAGCATCGGCTTACGTCGTT-GGAAAGAGCAGAAGTGGGATT 1272
Query 1196 GTGTATAGAGTAGTGGC-GGC--GGAATCG--TCC--T--C--C-ACCGTT---GTC--- 1237
||||| ||||||||||| || || |||| | | | | | || ||| |||
Sbjct 1273 GTGTACAGAGTAGTGGCCGGAATGGGATCGGGTACAGTGGCGGCGAC-GTTTACGTCATC 1331
Query 1238 -GCCGT--T-------AGAAGGCTCAGCGACGGCA-ATGACACGTGGCGATTTAAGGATT 1286
||||| | ||||||||||||||||| | ||| ||||||||| |||||||
Sbjct 1332 CGCCGTCGTTGCTGTGAGAAGGCTCAGCGACGG-AGATGCCACGTGGCGGCGGAAGGATT 1390
Query 1287 TTGTGAATGAAGTTGAGAGC-ATTGGTAG-GATC-AATCATCCTAACATTGTACGGCTAA 1343
| | |||||||| ||| || || ||||| | || || ||||| || || ||||||||||
Sbjct 1391 TCGAAAATGAAGTGGAG-GCTATAGGTAGAG-TCCAA-CATCCAAATATCGTACGGCTAA 1447
Query 1344 GAGCTTACTACTATGCAGAGGACGAGAAGCTTCTC-ATCACTGATTTCATTAA-CAATGG 1401
||||||| |||||||| || || |||| ||| || |||||||||| ||| | ||| ||
Sbjct 1448 GAGCTTATTACTATGCTGAAGATGAGAGGCT-CTTGATCACTGATTACAT-ACGCAACGG 1505
Query 1402 CAGCTTGTACTCTGCCTTACATGGTGGACCTTCGAATACTCGGCCTACACTCTCTTGGGC 1461
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 1506 GAGCTTGTACTCTGCCTTACATGGTGGACCTTCGAATACTCTGCCTTCACTCTCTTGGCC 1565
Query 1462 TGAGAGGTTA-TGTATAGCTCAAGGGACTGCTCGGGGTTTGATGTATATACATGAATACA 1520
|||||||||| | ||| || ||||| |||||||| || ||||||||||||||||| ||||
Sbjct 1566 TGAGAGGTTACT-TATTGCACAAGGAACTGCTCGTGGCTTGATGTATATACATGAGTACA 1624
Query 1521 GTTCGAGAAAGTATGTTCACGGCAACCTAAAATCAAGCAAAATCCTG-TTAGATAATGAG 1579
| |||||||||| ||||| |||||||| ||||||| |||||||||| || ||| | ||
Sbjct 1625 GCCCGAGAAAGTACGTTCATGGCAACCTGAAATCAACCAAAATCCTGCTT-GATGACGAA 1683
Query 1580 CTGCATCCTCACGTCTCAGGATTTGGTCTCACACGACTGGTTTCCGGCTA-TCCCAAAGT 1638
| || |||| | ||||||| || ||||| ||||| |||| || || || ||| ||| |
Sbjct 1684 TTACAGCCTCGCATCTCAGGCTTCGGTCTTACACGTTTGGTCTCAGGTTACTCC-AAACT 1742
Query 1639 CACTGACCATTCACTATCATCCATGACGCAAAG-TATAGACCAAGG--A-TT------TG 1688
||| | ||| ||||| |||| | |||||| | |||||||| | || ||
Sbjct 1743 CACCGG---TTCGCTATCCGCCATAAGGCAAAGCT-TAGACCAAACCTACTTAACCCCTG 1798
Query 1689 CCACAA-GACTCTCA-G--TCTCAGCTCC-TGCAGCTGCTTACCTTGCACCCGAAGCCCG 1743
| |||| | | || | || ||||||| | | | ||||||||||||||| || || ||
Sbjct 1799 CTACAACGG-TGACAAGAATCACAGCTCCCT-CTGTTGCTTACCTTGCACCTGAGGCTCG 1856
Query 1744 AGCTTCTTCTGATTGCAAATTATCTCACAAATGCGATGTTTATTCTTTTGGTGT-GATTC 1802
||||||||||| ||||||||||||||| || |||||||| ||||| ||||| || | | |
Sbjct 1857 AGCTTCTTCTGGTTGCAAATTATCTCAGAAGTGCGATGTCTATTCGTTTGGGGTTG-TCC 1915
Query 1803 TATTGGAGCTGTTGACTGGTCGATTACCTTATGGTTCCTCTGAAAACGAAGGAGAAGAAG 1862
|| ||||| |||||||||| || || || ||||||||| | ||||| || | | ||||
Sbjct 1916 TAATGGAGTTGTTGACTGGCCGTTTGCCCAATGGTTCCTATAAAAAC-AATG-GC-GAAG 1972
Query 1863 AACTCGTGAATGTTTTGAGGAAGTGGCACAAGGAAGAGAGATCT-TTGGCTGAGATCTTA 1921
|||| ||| ||||| ||||||| ||| ||| ||||||| | | ||||||||||| |||
Sbjct 1973 AACTAGTGCATGTTGTGAGGAACTGGGTCAAAGAAGAGA-AGCCGTTGGCTGAGATTTTA 2031
Query 1922 GACCCAAAGCTTCTGAA-ACAGGATTTTGC-GAATAAGCAGGTTATTGCAACCATCCATG 1979
||||| || ||||||| | ||| | || || |||||| ||||||||| |||| ||||
Sbjct 2032 GACCCGGAGATTCTGAACAAAGG-TCACGCAGA-TAAGCAAGTTATTGCAGCCATTCATG 2089
Query 1980 TCGCTTTAAACTGCACGGAAATGGATCCAGATATGCGTCCTAGGATGAGATCTGTGTCTG 2039
| || |||||||||||||||||||||||||| | ||||| ||||||||||| |||||||
Sbjct 2090 TTGCCTTAAACTGCACGGAAATGGATCCAGAGGTTCGTCCGAGGATGAGATCAGTGTCTG 2149
Query 2040 AAATTCTAGGTCGGATCAAAT 2060
| | ||| || || |||||||
Sbjct 2150 AGAGTCTCGGCCGAATCAAAT 2170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83303365815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5