BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42300.1
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483321 jgi|Araly1|483321|fgenesh2_kg.4__2381__AT2G42300.1 2039 0.0
Ahg486233 jgi|Araly1|486233|fgenesh2_kg.5__2225__AT3G57800.1 252 7e-66
> Ahg483321 jgi|Araly1|483321|fgenesh2_kg.4__2381__AT2G42300.1
Length=1435
Score = 2039 bits (1104), Expect = 0.0
Identities = 1271/1350 (94%), Gaps = 17/1350 (1%)
Strand=Plus/Plus
Query 229 TCAAAATACTCCCCAACTGACAAAAATTAAATTCCtttttttCTCTCTCGATTTTAA-AA 287
||||||||||| |||||||||||| |||||| ||| || | |||||||||||| || ||
Sbjct 100 TCAAAATACTCGCCAACTGACAAACATTAAACTCC--TTCTCCTCTCTCGATTTAAAGAA 157
Query 288 GCTCTAAAAGGAACGAGTTGATCAAGTCGGTCGGTTCT-GGTTATCACTGAATTTCATTC 346
||| ||| |||| ||||||||||||||||||||||| |||| || ||||| | |||
Sbjct 158 GCT-TAACTCGAACCAGTTGATCAAGTCGGTCGGTTCTGGGTT-TCTCTGAA--T--TTC 211
Query 347 AACTCGGTTTATTCCGGTTTAAGTGTGATTTTCCCGGCTAATGGATCTGACCCAAGGTTT 406
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 212 AACTCGGTTTATTCCGGTTTAAGTGTGATTTTCCCGGCTTATGGATCTAACCCAAGGCTT 271
Query 407 CAGAGCTAGATCCGGCGTTGTTGGGCCGGTGGCCGGACTAGAATCTCTCAATTTCAGCGA 466
| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||
Sbjct 272 CGGAGCTAGATCCGGCGTTGTTGGGCCGGTGACCGGACTTGAATCTCTCAATTTTAGCGA 331
Query 467 CGAATTTCGGCACTTAGTGACGACGATGCCTCCGGAGACTACTGGCGGCTCCTTCACGGC 526
|||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 332 CGAATTTCGGCACTTAGTGACGACGATGCCTCCGGAGAATACCGGCGGCTCTTTCACGGC 391
Query 527 TTTACTCGAGATGCCTGTGACTCAGGCCATGGAGCTTCTCCATTTCCCAGATTCATCGTC 586
||| |||||||||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 392 TTTGCTCGAGATGCCTGTGACTCAAGCCATGGAGCTTCTCCATTTCACTGATTCATCGTC 451
Query 587 TTCTCAGGCCAGAACCGTTACCAGTGGTGATATTTCTCCTACCACTCTTCACCCTTTCGG 646
||||||||| |||||||||||| || |||||| ||||||| |||||||||||||||||
Sbjct 452 TTCTCAGGCGAGAACCGTTACC---GGAGATATTGCTCCTACTACTCTTCACCCTTTCGG 508
Query 647 GGCTTTGACTTTTCCTTCTAACTCGCTTCTCTTGGACCGCGCCGCTCGTTTCTCGGTGAT 706
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GGCATTGACTTTTCCTTCTAACTCGCTTCTCTTGGACCGCGCCGCTCGTTTCTCGGTGAT 568
Query 707 TGCTACAGAGCAAAACGGTAATTTTTCCGGCGAGACTGCTAACTCTTTACCTTCTAATCC 766
|||||| ||||||||| ||||| | |||||||||||||| |||||||||||||| ||| |
Sbjct 569 TGCTACTGAGCAAAACTGTAATATCTCCGGCGAGACTGCGAACTCTTTACCTTCCAATTC 628
Query 767 CGGCGCGAATCTGGACAGAGTCAAAGCCGAGCCTGCTGAGACCGATTCAATGGTGGAGAA 826
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 629 CGGCGCCAATCTGGACAGAGTCAAGGCTGAGCCTGCTGAGACCGATTCAATGGTGGAGAA 688
Query 827 TCAGAACCAGAGCTACTCTTCTGGAAAAAGGAAAGAACGCGAGAAGAAGGTCAAAAGCTC 886
||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 689 TCAGAACCAGAACTACTCTTCTGGAAAGAGGAAAGATCGCGAGAAGAAGGTCAAAAGCTC 748
Query 887 GACGAAGAAGAACAAGAGCTCCGTGGAGTCAGACAAGTTGCCATATGTTCATGTCAGAGC 946
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 749 GACGAAGAAGACCAAGAGCTCCGCAGAGTCAGACAAGTTGCCATATGTTCATGTCAGAGC 808
Query 947 TCGTCGTGGTCAAGCTACTGATAACCATAGCTTAGCAGAGAGAGCAAGAAGGGAGAAGAT 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 TCGTCGTGGTCAAGCTACTGATAACCATAGCTTAGCAGAGAGAGCAAGAAGGGAGAAGAT 868
Query 1007 AAACGCACGAATGAAGCTGCTACAGGAACTGGTCCCAGGCTGTGATAAGATTCAGGGCAC 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 AAACGCACGAATGAAGCTGCTACAGGAACTGGTCCCAGGCTGTGATAAGATTCAGGGCAC 928
Query 1067 TGCATTGGTTCTGGATGAAATCATTAACCATGTGCAAACTTTACAGCGTCAAGTGGAGAT 1126
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 929 AGCATTGGTTCTGGATGAAATCATAAACCATGTGCAGTCTTTACAGCGTCAAGTGGAGAT 988
Query 1127 GCTATCTATGAGACTTGCTGCAGTAAACCCCAGAATCGACTTCAATCTAGACAGCATACT 1186
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 989 GCTATCTATGAGACTTGCTGCAGTAAACCCCAGAGTCGAGTTCAATCTAGACAGCATACT 1048
Query 1187 GGCTTCAGAGAACGGCTCTCTTATGGATGGTAGCTTCAATGCAGAGTCTTATCATCAGCT 1246
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1049 GGCTTCAGAAAACGGCTCTCTTATGGATGGTAGCTTCAATGGAGAGTCTTATCATCAGCT 1108
Query 1247 GCAACAATGGCCTTTCGACGGCTACCACCAGCCGGAATGGGGAAGAGAAGAAGATCATCA 1306
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1109 GCAACAGTGGCCTTTCGATGGCTACCACCAGCCGGAATGGGGAAGAGAAGAAGATCAACA 1168
Query 1307 TCAAGCCAATTTCTCAATGGGTTCAGCTACTTTACACCCAAATCAGGTGAAAATGGAGCT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 TCAAGCCAATTTCTCAATGGGTTCAGCTACTTTACACCCAAATCAGGTGAAAATGGAGCT 1228
Query 1367 CTAAGTTGGAAACAGTTTGACATGCTTATGTGTATATATAAGAGTTATATATATCTACTA 1426
||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 1229 CTAAGTTGGAAACAGTTTGACATGCTTATGTATATATATAAGAGTTATATAT--CTGCTA 1286
Query 1427 AAGTTTCGATTGTTGAATTAGAGGTAGAAAATGGTTATGATTGTTTCAGGTCTTTGTTCA 1486
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1287 AAGTTTCGATTGTTGAATTAGAGGGAGAAAATGGTTATGATTGTTTCAGGTCTTTGTTCA 1346
Query 1487 TGGCCTTTCTATATTTACTAGATTCCTCAATGTAGAATTCAGAATGTCTAAATTGCGTTT 1546
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1347 TGGCCTT-CTATATTTACTAGATTCCTCAATGTAGAATTCAGAATGTCTCAATTGTGTTT 1405
Query 1547 CCCTTGAGAGAA-GTATATGAAGATTTGAT 1575
|||||||||||| |||||||||||||||||
Sbjct 1406 CCCTTGAGAGAAAGTATATGAAGATTTGAT 1435
Score = 100 bits (54), Expect = 3e-20
Identities = 54/54 (100%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1 GGCTTTATTAACAGACGCACTCCAAAGCTAACGTTGCTTTCTTCCCACTCCAAA 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGCTTTATTAACAGACGCACTCCAAAGCTAACGTTGCTTTCTTCCCACTCCAAA 54
> Ahg486233 jgi|Araly1|486233|fgenesh2_kg.5__2225__AT3G57800.1
Length=1836
Score = 252 bits (136), Expect = 7e-66
Identities = 186/210 (89%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 848 TGGAAAAAGGAAAGAACGCGAGAAGAAGGTCAAAAGCTCGACGAAGAAGAACAAGAGCTC 907
||| || |||||||| ||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 809 TGGGAAGAGGAAAGATTTCGAAAAGAAGGTTAAAAGCTCGACGAAGAAGAACAAAAGCTC 868
Query 908 CGTGGAGTCA-GACAAGTTGCCATATGTTCATGTCAGAGCTCGTCGTGGTCAAGCTACTG 966
|| ||| | || ||| ||||||||||||| || |||||||||||||||||||| || |
Sbjct 869 CGAAGAG-AACGAGAAGCTGCCATATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACCG 927
Query 967 ATAACCATAGCTTAGCAGAGA-GAGCAAGAAGGGAGAAGATAAACGCACGAATGAAGCTG 1025
||| ||||||||||||||| | |||||||||| ||||||||||| |||||||||||||||
Sbjct 928 ATAGCCATAGCTTAGCAGA-ACGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCTG 986
Query 1026 CTACAGGAACTGGTCCCAGGCTGTGATAAG 1055
||||||||||||||||||||||||||||||
Sbjct 987 CTACAGGAACTGGTCCCAGGCTGTGATAAG 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59039879750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5