BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42310.1
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935092 jgi|Araly1|935092|scaffold_403080.1 651 0.0
Ahg324272 jgi|Araly1|324272|fgenesh1_pm.C_scaffold_5001816 311 5e-84
> Ahg935092 jgi|Araly1|935092|scaffold_403080.1
Length=385
Score = 651 bits (352), Expect = 0.0
Identities = 374/385 (97%), Gaps = 0/385 (0%)
Strand=Plus/Plus
Query 20 GAAATATCTGAACCAACGCGATGCCGTCGACGCAGTCCTTGACCGTCGCAGCGAAGACGC 79
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAATATCGGAACCAAAGCGATGCCGTCGACGCAGTCCTTGACCGTCGCAGCGAAGACGC 60
Query 80 TACGAAATCGGATCTTCTCTAGGTCTGGATCTACATCCGCCGGTCCGAGTCGGTGGGCGA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACGAAATCGGATCTTCTCTAGGTCTGGATCTACATCCGCCGGTCCGAGTCGGTGGGCGA 120
Query 140 CGCCAGGTCACGAGGAGCGACCTAAGGGTTACTTTATGAACCGTACTCCTCCGGCACCAG 199
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 121 CGCCAGGTCACGAGGAGCGGCCCAAGGGTTACTTTATGAACCGGACTCCTCCGGCACCAG 180
Query 200 GACAGTCGCGAAAATGGGAAGATTGGGAGCTTCCTTGTTACATCACCAGCTTCCTTACAA 259
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 181 GACAGTCGCGAAAATGGGAAGATTGGGAGCTTCCTTGTTACATCACTAGCTTCCTCACAA 240
Query 260 TTGTTATCCTCGGCGTTGGACTCAATGCCAAACCTGATCTTTCAATCGAGACTTGGGCTC 319
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGTTATCCTCGGCGTGGGACTCAATGCCAAACCTGATCTTTCAATCGAGACTTGGGCTC 300
Query 320 ATCAGAAAGCTTTAGAGCGTCTTGAGATGGAGAAGCTCGCGACCGCTGGAGATTCATCTG 379
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 301 ATCAGAAAGCTTTAGAGCGTCTTGAGATGGAGAAGCTCGCAACCGCTGGAGATTCGTCTG 360
Query 380 ATTAAGCATCACCGTTGGATCTCCG 404
|||||||||||||||| ||||||||
Sbjct 361 ATTAAGCATCACCGTTTGATCTCCG 385
> Ahg324272 jgi|Araly1|324272|fgenesh1_pm.C_scaffold_5001816
Length=1770
Score = 311 bits (168), Expect = 5e-84
Identities = 291/350 (83%), Gaps = 10/350 (3%)
Strand=Plus/Plus
Query 40 ATGCCGTCGACGCAGTCC-TTGACCGTCGCAGCGAAGACGCTACGAAATCGGAT-C-TTC 96
||| |||||||| || || |||| |||||||||||||||||| ||||| ||||| | ||
Sbjct 1426 ATGGCGTCGACGAAG-CCATTGATCGTCGCAGCGAAGACGCTCCGAAACCGGATCCATT- 1483
Query 97 TCTAGGTCTGGATCTACATCCGCCGGTCCGAGTCGGTGGGCGACGCCAGGTCACGAGGAG 156
|| | || ||||| ||||| || ||||| || |||||||| ||||| |||||||||||
Sbjct 1484 TC-CGATCAGGATCCACATCTGCTGGTCCAAGCCGGTGGGCAACGCCGGGTCACGAGGAA 1542
Query 157 CGACCTAAGGGTTACTTT-ATGAACCGTACTCCTCCGGCACCAGGACAGTCGCGAAAATG 215
||||| || || || ||| |||||||| ||||| ||| | || ||||||||||| || ||
Sbjct 1543 CGACCCAAAGGATA-TTTCATGAACCGGACTCCGCCGCCGCCGGGACAGTCGCGCAAGTG 1601
Query 216 GGAAGATTGGGAGCTTCCTTGTTACATCACCAGCTTCCTTACAATTGTTATCCTCGGCGT 275
|||||||||||||||||||||||||||||| ||||| || || ||||| |||||||| ||
Sbjct 1602 GGAAGATTGGGAGCTTCCTTGTTACATCACAAGCTTTCTCACGATTGTCATCCTCGGTGT 1661
Query 276 TGGACTCAATGCCAAACCTGATCTTTCAATCGAGACTTGGGCTCATCAGAAAGCTTTAGA 335
|| |||||||||||||| ||||||||||||||||| |||||||| ||||||||| | ||
Sbjct 1662 GGGTCTCAATGCCAAACCCGATCTTTCAATCGAGACCTGGGCTCACCAGAAAGCTCTCGA 1721
Query 336 GCGTCTTGAGATGGAGAAGCTCGCGACCG-CTGGAGATTCATCTGATTAA 384
||| || || |||||||| || ||| | | | || ||||| || ||||||
Sbjct 1722 GCGCCTCGAAATGGAGAAACTTGCGTCTGTCGGG-GATTCTTCCGATTAA 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24894264801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5