BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42320.1
Length=2290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483324 jgi|Araly1|483324|fgenesh2_kg.4__2384__AT2G42320.2 3147 0.0
Ahg922968 jgi|Araly1|922968|scaffold_104249.1 132 1e-29
> Ahg483324 jgi|Araly1|483324|fgenesh2_kg.4__2384__AT2G42320.2
Length=2376
Score = 3147 bits (1704), Expect = 0.0
Identities = 1994/2126 (94%), Gaps = 52/2126 (2%)
Strand=Plus/Plus
Query 124 ATTGAGAGAGTTTCACGATGAAGGCAAGAACAACTAACAATGTTGTTCAGTCGAAGAGAT 183
||||| |||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 247 ATTGAAAGAGATTCATGATGAAGGCAAGAACAACTAACAA---TGTTCAGTCGAAGAGAT 303
Query 184 CTACTAAGAGTGTAAGAAAAGATCAAAAGCTGCAGAAGACGAATAGCCAGaaaaaaaCAG 243
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TTACAAAGAGTGTAAGAAAAGATCAAAAGCTGCAGAAGACGAATAGCCAGAAAAAAACAG 363
Query 244 AACAGGAGAAGCACAAGGACTTGGATACTAAGGAAGAGTCTAGTAATATCTCTACAGTAG 303
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 364 AACAAGAGAAGCACAAGGACTTGGATGCTAAGGAAGAGTCTAGTAATATCTCTACAGTAG 423
Query 304 CAAGTGATTCAACCATACAATCAGATCCCTCTGAGTCTTACGAGACGGTAGATGTTCGTT 363
|||||||||| |||| |||||||||| || | || | || ||| | | ||
Sbjct 424 CAAGTGATTCTACCACACAATCAGAT-CC-C----TC-T----GA-GGT---T-TACGAG 467
Query 364 ACTTGGATGATGATAATGGTGTCATTGCCTCTGCAGATGCTCATCAAGAATCAGATTCTA 423
|| || | | | || || || || || || |||| | |||||| |||||||||||
Sbjct 468 AC--GG-T-A-G---AT-GT-TCGTT-ACT-TG--GATGATGATCAAGGATCAGATTCTA 513
Query 424 GCAGCGTTGTTGACAAAACGGAGAAGGAGCATAATTTAAGTGGATCCATTTGTGATTTGG 483
|||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 514 GCAGAGTTGTGGACAAAACGGAGAAGGAGCATAATTTAAGTGGATCCCTTTGTGATTTGG 573
Query 484 AGAAAGATGTTGATGAGCAA-GAATGTAAAGATGCTAACATTGATAAAG--AT-G---C- 535
|||||||||||| ||| || | |||||||| ||||||||||||||||| || | |
Sbjct 574 AGAAAGATGTTGCTGA-AAATGTATGTAAAGTTGCTAACATTGATAAAGAAATCGATACA 632
Query 536 -----TCGTGAAGGTATCAGTGCTGATGTTTGGGAAGATGCTTCGAATGGTGCTCTTAGT 590
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 633 GATGTTCGTGAAGGTATCAATGCCGATGTTTGGGAAGATGCTTCGAATGGTGCTCTTAGT 692
Query 591 GCTGGCAGTGAGAATGAAGCAGCTGATGTAACAGAGAATAATGGTGGGAACTTTGAAGAT 650
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 693 GCTGGAAGTGAGAATGAGGCAGCTGATGTAACAGAGAATAATGGTGGCAACTTTGACGAT 752
Query 651 GGATCTTCGGAAGAGAAGATTGAACGTTTAGAGACGAGGATCGAGAAACTTGAAGAGGAG 710
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 753 GGATCTTCGGAAGAGAAGATTGAGCGTCTAGAGACGAGAATCGAGAAACTTGAAGAGGAG 812
Query 711 CTTAGAGAAGTTGCTGCACTCGAGATTTCGCTCTATTCTGTTGTGCCGGACCATTGTAGC 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 CTTAGAGAAGTTGCTGCACTCGAGATTTCGCTCTATTCTGTTGTGCCGGACCATTGTAGC 872
Query 771 TCTGCTCACAAGCTTCATACGCCTGCTCGGCGTATTTCTAGAATCTACATCCATGCCTGT 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TCTGCTCACAAGCTTCATACGCCTGCTCGGCGTATTTCTAGAATCTACATCCATGCCTGT 932
Query 831 AAGCATTTTACTCAGGGAAAGCGTGCTACGATCGCTAGAAACTCTGTATCTGGTCTTGTT 890
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 933 AAGCATTTTACTCAGGGGAAGCGTGCTACGATCGCTAGAAACTCTGTTTCTGGTCTTGTT 992
Query 891 TTGGTTGCCAAATCTTGTGGGAATGATGTTTCGAGGTTGACCTTCTGGTTATCAAACATC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TTGGTTGCCAAATCTTGTGGGAATGATGTTTCGAGGTTGACCTTCTGGTTATCAAACATC 1052
Query 951 ATAGCTTTGAGGCAGATAATTTCGCAAGCATTTGGTAGGTCTCGCATCACACAAATCTCT 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1053 ATAGCTTTGAGGCAGATAATTTCGCAAGCATTTGGTAGGTCTCGCATCACACAGATCTCT 1112
Query 1011 GAACCAAATGAGAGTGGTAATAGTGATTCAGGGAAGAAAACGAACCTGAGATGGAAGAAT 1070
||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||||||
Sbjct 1113 GAACCAAATGAGAGTGGAAATGGTAATTCAGGGAAGAAAACAAACCTGAGATGGAAGAAT 1172
Query 1071 GGTTTCCAACAGCTTTTGGAGGATTGGCAAGAAACTGAAACATTTACTACTGCACTTGAG 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 GGTTTCCAACAGCTTTTGGAGGATTGGCAAGAAACTGAAACATTTACTACTGCACTTGAG 1232
Query 1131 AAAATCGAGTTTTGGGTATTCTCTAGAATAGTGGAGTCTGTTTGGTGGCAGGTCTTTACT 1190
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1233 AAAATCGAATTTTGGGTATTCTCTAGAATCGTGGAGTCTGTTTGGTGGCAGGTCTTTACT 1292
Query 1191 CCTCATATGCAATCACCTGAAGACGACTCATCAGCAAGTAAATCAAATGGGAAACTGATG 1250
|||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1293 CCTCATATGCAATCCCCTGAAAACGACTCATCAGCCAGTAAATCAAATGGGAAACTGATG 1352
Query 1251 GGACCTTCCTTGGGTGATCAGAACCAAGGAACCTTTTCGATAAGCCTATGGAAAAATGCT 1310
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1353 GGACCTTCCTTGGGTGATCAGAACCAAGGAACCTTTTCAATTAGCCTATGGAAAAATGCT 1412
Query 1311 TTCCGAGATGCTCTGCAACGGATTTGTCCTATGCGAGGAGCGGGACACGAATGCGGTTGC 1370
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1413 TTCCGAGATGCTCTGCAACGGCTTTGTCCTATGCGAGGCGCGGGACACGAATGCGGTTGC 1472
Query 1371 TTACCTGTATTGGCTAGAATGGTTATGGACAAGTGTATCGGTAGATTCGATGTAGCCATG 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 TTACCTGTATTGGCTAGAATGGTTATGGACAAGTGTATCGGTAGATTCGATGTAGCCATG 1532
Query 1431 TTTAATGCTATTCTCCGCGAATCAGAACATCAGATTCCAACTGATCCTGTCTCTGATCCT 1490
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1533 TTCAATGCTATTCTCCGCGAGTCAGAACATCAGATTCCAACTGATCCCGTCTCTGATCCT 1592
Query 1491 ATTCTTGATTCCAAAGT-TCTGCCTATTCCTGCTGGAGACTTAAGCTTTGGATCAGGGGC 1549
||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||| ||
Sbjct 1593 ATTCTTGATTCCAAAGTGT-TGCCTATTCCTGCTGGAAATTTAAGCTTTGGATCAGGAGC 1651
Query 1550 ACAACTTAAAAACGCGATTGGCAATTGGTCTAGATGCCTCACTGAAATGTTTGGCATGAA 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 ACAACTTAAAAACGCGATTGGCAATTGGTCTAGATGCCTCACTGAAATGTTTGGCATGAA 1711
Query 1610 CTCTGATGATTCTTCAGCGAAAGAAAAACGAAACAGTGAAGATGATCATGTAGAAAGTAA 1669
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 CTCTGATGATTCTTCGGCGAAAGAAAAACGAAACAGTGAAGATGATCATGTAGAAAGTAA 1771
Query 1670 AGCCTTTGTTTTACTAAATGAACTTAGTGATCTTCTTATGCTCCCAAAAGACATGCTGAT 1729
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1772 AGCCTTTGTTTTACTAAATGAACTAAGTGATCTTCTTATGCTCCCAAAAGATATGCTGAT 1831
Query 1730 GGAAATATCCATTAGAGAAGAGATATGCCCATCAATCAGTCTTCCACTCATCAAAAGAAT 1789
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1832 GGAAATATCCATTAGAGAAGAGATATGCCCATCAATTACTCTTCCACTCATCAAAAGAAT 1891
Query 1790 ACTCTGCAACTTCACTCCTGATGAGTTCTGTCCAGATCAAGTACCCGGAGCTGTCCTAGA 1849
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1892 ACTCTGCAACTTCACTCCTGATGAGTTCTGTCCAGATCATGTACCTGGAGCTGTCCTAGA 1951
Query 1850 AGAGCTTAATGCTGCAGAGAGCATTGGTGATAGGAAGCTATCAGAAGCAAGCTTCCCTTA 1909
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 AGAGCTCAATGCTTCAGAGAGCATTGGTGATAGGAAGCTATCAGAAGCAAGCTTCCCTTA 2011
Query 1910 TGCAGCTTCTTCTGTTTCTTACATGCCTCCATCGACCATGGATATAGCAGAAAAAGTTGC 1969
||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2012 TGCAGCTTCCTCGGTTACTTACATGCCTCCATCGACCATGGATGTAGCAGAAAAAGTTGC 2071
Query 1970 AGAGGCTTCAGCAAAATTGTCAAGGAATGTGTCTATGATACAGAGAAAAGGGTACACAAG 2029
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 AGAGGCTGCAGGAAAATTGTCAAGGAATGTGTCTATGATACAGAGAAAAGGGTACACAAG 2131
Query 2030 CGACGAGGAGCTTGAGGAACTGGACTCTCCTCTTACATCCATTGTTGACAAAGCGAGTGA 2089
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2132 CGACGAGGAGCTTGAGGAACTGGACTCTCCTCTTACATCCATTGTCGACAAAGCGAGTGA 2191
Query 2090 CTTCACTGGTTCAGCGACTTCAAATGCAAGATACAAGCTTCTTCGACAAGTGTGGGTTTA 2149
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 2192 CTTCACTGGTTCAGCGACTTCGAATGCAAGATACAAGCTTCTTCGAGAAGTGTGGGTTTA 2251
Query 2150 GTTT-GGAACCAAGTCGAACTGTAAGTAGTATGTATGTGGTTGGT-GTTTGGTATTGCAA 2207
||| ||||||||||| |||||||||||||||||||||| ||||| | | ||||||||
Sbjct 2252 GTTGAGGAACCAAGTCAAACTGTAAGTAGTATGTATGTG-TTGGTTGGGTATTATTGCAA 2310
Query 2208 AGAGAATTTGGTTGACTTATAAAAAA 2233
|||||| |||||||||||||||||||
Sbjct 2311 AGAGAAGTTGGTTGACTTATAAAAAA 2336
> Ahg922968 jgi|Araly1|922968|scaffold_104249.1
Length=396
Score = 132 bits (71), Expect = 1e-29
Identities = 122/145 (84%), Gaps = 9/145 (6%)
Strand=Plus/Plus
Query 1401 AAGTGTATCGGTAG-ATTCGATGTAGCCATGTTTAATGCTATTCT-CCGCGAATCAGAAC 1458
|||||||| | | | ||| |||||||| ||||| || || ||||| || || ||||| |
Sbjct 238 AAGTGTATAGCTCGAATT-GATGTAGCTATGTTCAACGCAATTCTGCC-TGAGTCAGAGC 295
Query 1459 ATCAGATTCCAACTGATCCTGTCTCTGATCCTATTCTTGATTCCAAAGTTCTGCCTATTC 1518
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 296 ATCAGATTCCCACTGATCCTGTCTCTGATCCTATTCTTGATTCCAAAGTTCTGCCT---C 352
Query 1519 CT-GCTGGAGACTTAAGCTTT-GGA 1541
|| |||||||| ||| || || |||
Sbjct 353 CTTGCTGGAGATTTATGCATTAGGA 377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86236314680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5