BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42330.1
Length=2786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483326 jgi|Araly1|483326|fgenesh2_kg.4__2386__AT2G42330.1 3057 0.0
Ahg471905 jgi|Araly1|471905|fgenesh2_kg.1__1859__AT1G17070.1 1293 0.0
> Ahg483326 jgi|Araly1|483326|fgenesh2_kg.4__2386__AT2G42330.1
Length=2077
Score = 3057 bits (1655), Expect = 0.0
Identities = 1950/2090 (93%), Gaps = 30/2090 (1%)
Strand=Plus/Plus
Query 591 GAGAAGAAGAAGAGTGTTGTGGTCACTGTTAGTGAGAATCATGGTGATGGAAGGAGGGAT 650
||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GAGGAGAAGAAGATTGTTGAGGTCACTGTTAGTGAGAATCATGGTGATGGAAGGAGGAAT 60
Query 651 CTTTGGAAAAAGAAGAATGTGAGGAAGGAAGTTTATATTACCGCGGAAGAGTTTCTT-GG 709
||||||||||||||||||||||||||||||||||||||||| || || |||||| || ||
Sbjct 61 CTTTGGAAAAAGAAGAATGTGAGGAAGGAAGTTTATATTACTGCAGAGGAGTTT-TTGGG 119
Query 710 GAAGAAACAGGAAGAGGGTTTTGGTTGTGATCAG-CTTATTATTGATAAGCGAGGACCAC 768
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct 120 GAAGAAACAGGAAGAGGGTTTTGGTTGTGGTCAGAC-CATTATTGATAAGCGAGGACCAC 178
Query 769 AAGATCGAGTTGTTAACAGTTTGA-GAAATTTATACGCAGAGGAGAAAGCAACAGATGCT 827
||| |||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||
Sbjct 179 AAGGTCGAGTTGTTAAAAGTTT-ACGAAATTTATACGCAGAGGAGAAAGCAAGAGATGCC 237
Query 828 AATGTTCAACAGCCAGAGTTACAGCATAACTTGCGGTTTATTGTTAAATCACTCGAGCAT 887
||||||| ||||||||||||||||||||||||| ||||||||||| | ||| ||||||||
Sbjct 238 AATGTTCCACAGCCAGAGTTACAGCATAACTTGAGGTTTATTGTTGAGTCAGTCGAGCAT 297
Query 888 GGGATTCTGAAGACTGATAAGGATTTGAGGAACGAGAAAGGATTAGCCTTGAGCTTGCAG 947
|| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 298 GGAATTCTGAAGATTGATAAGGATTTGAGGAACGAGAAAGAATTAGCCTTGAGCTTGCAG 357
Query 948 CAAGAGAAGGAGAAATTTAAGATGGGGGTAAAGAAACAGAAAACGCTGTTTGACAACTTG 1007
|||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||||||||
Sbjct 358 CAAGAGAAGGAGAAATTTAAAATGGGGGAAAAGAAACAAAAAATGCTGTTTGACAACTTG 417
Query 1008 GGATATGTTGCAGAGGAAATCGATCGAATTGAGGTGGAGATTGCGTCTGGGAATTTAACC 1067
|||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 418 GGATATATTGCAGAGGAAATCGATCGAATTGAGATGGAGATTGCTTCTGGGAATTTAACA 477
Query 1068 TTGGATTCACTTGCCAATCGTTTCAAGGACTTGCGTTCAAGCTATCCTGATGACTATAAG 1127
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 478 TTGGATTCACTTGCCAATCATTTCAAGGACCTGCGTTCAAGCTATCCTGATGACTATAAG 537
Query 1128 TGTTGTAACTTGTCATGCATTGCTTCCTCACTGGCCTTGCCTCTCTTTATCAGGATGTTT 1187
||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 538 AGTTGTAAATTGTCATGCATTGCTTGCTCACTCGCCTTGCCTCTCTTTATCAGGATGTTT 597
Query 1188 CAGGGTTGGGACCCTCTTAGTGATGCAGAGCATGGTATCGAGGCTATATCTTCCTGGAAA 1247
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 CAGGGTTGGGACCCTCTGAGTGATGCAGAGCATGGTATCGAGGCTATTTCTTCCTGGAAA 657
Query 1248 ATGCTGCTGGAAGTTGAGGACAATCAAAGTATCTCGACGCC-TTATAGCCAACTTGTCTC 1306
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 658 ATGCTGCTGGAAGTTGAGGACAATCAAAGTATCTCGACGCCGTT-TAGCCAACTTGTCTC 716
Query 1307 AGAGGTAATTTTACCTGCTGTGCGAGTATCAGGCATCAATACTTGGGAACCTAGAGATCC 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGAGGTAATTTTACCTGCTGTGCGAGTATCAGGCATCAATACTTGGGAACCTAGAGATCC 776
Query 1367 TGAGCCAATGTTGAGA-TTGCTAGAGACATGGGAGAAAATGCTACCCTCACTTATTTTCG 1425
||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGAGCCAATGCTGAGATTTG-TAGAGACATGGGAGAAAATGCTACCCTCACTTATTTTCG 835
Query 1426 AAACGATTTTGACCACAGTAGTGCTGCCAAAATTGTCAATC-GCTATTGAATCTTGGGAA 1484
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 836 AAACGATTTTGACCACAGTAGTGCTGCCAAAATTGTCAA-CGGCTATTGAATCTTGGGAA 894
Query 1485 CCACGTTTGGAAACTGTTCCCATCCACT-TTTGGGTACATCCGTGGCTGCCAGTACTTGG 1543
|||||||||||||| ||||||||||| | ||||||| ||||||||||||||||| |||||
Sbjct 895 CCACGTTTGGAAACGGTTCCCATCCA-TGTTTGGGTGCATCCGTGGCTGCCAGTGCTTGG 953
Query 1544 TCAGAAGTTGGAAAGTGCGTATCAGATCATTCGAATGAAATTCGGTAACCTTCTTGATGC 1603
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 954 TCAGAAGTTGGAAAGTGCGTATCAGATTATTCGGATGAAATTCGGTAACCTTCTCGATGC 1013
Query 1604 TTGGCATCCTAGTGATGTGTCTGTCCACACTATCCTTTCCCCTTGGAAGACTGTTTTTGA 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTGGCATCCTAGTGATGTGTCTGTCCACACTATCCTTTCCCCTTGGAAGACTGTTTTTGA 1073
Query 1664 TGCTGCAAGCTGGGAGCAGCTTATGCGTCGTTACATAGTTCCTAAATTACAGGTGGCCTT 1723
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1074 TGCTGCAAGCTGGGAGCAGCTTATGCGTCGTTACATAGTTCCTAAATTACAGCTGGCTTT 1133
Query 1724 GCAAGAGTTCCAGATAAACCCAGCAGATCAGAACTTAGACGAGTTCAATTTGGTTATGGG 1783
||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 1134 GCAAGAGTTCCAGATAAACCCAGCAGACCAGAATTTAGACCAGTTCAATTTGGTTATGGG 1193
Query 1784 GTGGGTATCTTCAGTACCCATTCATCTAATGACTGATTTGATGGAGAGATTCTTTTTCCC 1843
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1194 GTGGGTATCTTCAGTACCCATACATCTAATGACTGATCTGATGGAGAGATTCTTTTTCCC 1253
Query 1844 CAAGTGGCTGGATGTTTTATATCACTGGTTGTGTTCAGAACCAAAGTTCGATGAGATAAT 1903
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1254 CAAGTGGCTGGATGTTTTATATCACTGGCTGTGTTCAGAACCAAAGTTCGATGAGATAAT 1313
Query 1904 GAAATGGTTTTTGGGTTGGAAAGGAACATTCCCACAGGAGCTTTCTGCAAACAGGAGGAT 1963
||| |||| |||||||||||||||| |||||||||| |||||||| ||||||||| ||||
Sbjct 1314 GAAGTGGTATTTGGGTTGGAAAGGATCATTCCCACATGAGCTTTCCGCAAACAGGGGGAT 1373
Query 1964 CGAAATCCAGTTCAAGCGTGGTCTAGATATGGCGAGGGAAGCAGTTGAACGGATGGAAAT 2023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CGAAATCCAGTTCAAGCGTGGTCTAGATATGGCGAGGGAAGCAGTTGAACGGATGGAAAT 1433
Query 2024 GTCTCAGCCAGGGGCAAGGGAAAACATAAGTTACCACAAGGCACAAGAGCAGAGGCAGTC 2083
||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 1434 GTCTCAGCCAGGGGCAAGGGAGAACATAAGCTACCACAAGGCACAAGAGCAGAGGGAGTC 1493
Query 2084 TGAGGGTCGTGCTAAGGTTCAGGCTCAGGTGGATGACCCGGAGGAGCTGAGTTTTAAAGA 2143
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1494 TGAGGGTCGTGCTAAGGTCCAGGCTCAGGTGGATGACCCCGAGGAGCTGAGTTTTAAAGA 1553
Query 2144 AGCAGTAGAATTGTTTGCGCAGGAGAAGGAGTTGCTGTTGAAACCTAAACCTCATAGAAT 2203
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AGCAGTAGAATTATTTGCGCAGGAGAAGGAGTTGCTGTTGAAACCTAAACCTCATAGAAT 1613
Query 2204 GCACAACGGTCTTCAGATCTATAGGTTCGGGAACGTGAGTGTGTTACTAGACTCAGCAAA 2263
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1614 GCACAACGGACTTCAGATCTATAGGTTCGGGAACGTGAGCGTGTTACTAGACTCAGCAAA 1673
Query 2264 CTCTAAGTTGTTGGCCCAGGAAGAAGGACGTTGGTTTCCTGTTGATCTTGACAGCTTGCT 2323
|||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 1674 TTCTAAGTTGTTGGCCCAGGATGCAGGAGGTTGGTTTCCTGTTGATCTTGACAGCTTGCT 1733
Query 2324 TAAGATGCACTATAGTGCTGTTACTGGAAAACAATGAAACATTACCCCTAATAAGGAAGT 2383
|||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1734 TAAGATGCACTATAGTGCCGTTGCTGGAAAACAATGAAACATTACCCCTAGGAAGGAAGT 1793
Query 2384 AAGAAGGAAGTATGTATAAATGTATTGGA-GCATCGACATTTCCCTGCTA-ACGGGTCTG 2441
|||||| ||| ||| |||||||| ||||| |||||||||||||||||| | | || |||
Sbjct 1794 AAGAAG-AAGAATGGATAAATGTTTTGGAAGCATCGACATTTCCCTGC-AGATGGACCTG 1851
Query 2442 AGTTAGAGAAGTCAGTATGTTTTTG-TGGGTT-GATATATTGGCTGGATTATCT-GTTGG 2498
|| ||||||||||| ||||||| | || || || || ||| || ||| || ||
Sbjct 1852 AGATAGAGAAGTCAATATGTTTCAACTT--TTAGAGATTTTACCTGTTTTTTCTAGT-GG 1908
Query 2499 TTGCATCTGAACAAACCTTGTGGAGATAG-T-GAGCTTTACTATTTTGTTTCCCTGCTCT 2556
|||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||| |
Sbjct 1909 TTGCATCTGAGCAAACCTTGTGGATATATATTGAGCTTTACTATTTTGTTTCCCTGCGGT 1968
Query 2557 GGCTTGTAACAATACCTCTTGTACCTCTCGTTTTTTAT-TGA-AAATAAACAA-ATAAGT 2613
||| || ||||| ||||||||| |||||||| ||||| | | |||||||||| ||||||
Sbjct 1969 GGCACGTTACAATGCCTCTTGTATCTCTCGTTCTTTATCT-ATAAATAAACAATATAAGT 2027
Query 2614 TGGTCAAATTCGACATCTTCAAGCTCATGATTGAGATTGTAAAGAACTCT 2663
||||| |||| |||||||||||| |||||||||||||||||||| ||||
Sbjct 2028 TGGTCGAATTTAACATCTTCAAGCCCATGATTGAGATTGTAAAGAGCTCT 2077
> Ahg471905 jgi|Araly1|471905|fgenesh2_kg.1__1859__AT1G17070.1
Length=2721
Score = 1293 bits (700), Expect = 0.0
Identities = 1566/1963 (80%), Gaps = 143/1963 (7%)
Strand=Plus/Plus
Query 413 AGGGATTGGTATGAAATTGCTTGAAAAAATGGGATATAAAGGAAGAGGGCTTGGAAAGAA 472
||| || |||||||| |||||||||| ||||| ||||| ||| | |||||||| |||||
Sbjct 652 AGGAATAGGTATGAAGCTGCTTGAAAAGATGGGGTATAAGGGAGGTGGGCTTGGGAAGAA 711
Query 473 TCAGCAGGGAATTGTAGCTCCTATTGAAGTACAATTGAGACCGAAGAATATGGGTATGGG 532
|||||| || ||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 712 TCAGCAAGGTATTGTAGCTCCTATTGAAGCGCAGTTGAGGCCGAAGAATATGGGTATGGG 771
Query 533 TTACAATGATTTCAAGGAGAAGAATGCACCTTTGTTTCCTTG-TTTAAACAAGGTTGAGG 591
|| ||||||||| | || ||| ||| ||| || || ||||||||||||||| |
Sbjct 772 GTATAATGATTTC-A--AG--GAA-GCA---AAGTTGCC-TGATTTAAACAAGGTTGA-G 820
Query 592 AGAAGAAGAAGAGTGTTGTGGTCACTGT---T-AG--TG---AGAATCATGGTGATGGAA 642
| ||||||||| ||||| ||||| ||| | || || ||| |||||||||| | |
Sbjct 821 -G-AGAAGAAGATTGTTGGGGTCAGTGTCAGTGAGAATGAACAGAGTCATGGTGATAG-A 877
Query 643 GGAGGG----ATCTTTGGAAAAAGAAGAATGTGAGGAAGGAAGTTTATATTACCGCGGAA 698
|||||| |||||||||| |||||||| |||||||||| ||||||| | || || ||
Sbjct 878 GGAGGGAAAAATCTTTGGAAGAAGAAGAAGGTGAGGAAGGCAGTTTATGTCACTGCAGAG 937
Query 699 GAGTTTCTTGG-GAAGAAACAGGAAGAGGGTTTTGGTTGTGATCAG-CTTATTATTGATA 756
||| || |||| |||||| |||||| |||| |||||| ||| ||| | ||||||||||
Sbjct 938 GAG-TTGTTGGAGAAGAAGCAGGAACAGGGCTTTGGTGGTGGGCAGAC-CATTATTGATA 995
Query 757 AGCGAGGACCACAAGATCGAGTTGTTAAC-AGTTT-GAGAAATTTATACGCAGAGGAGAA 814
|||||||||||||| ||| |||| | || | ||| || ||||||| | |||||||||||
Sbjct 996 TGCGAGGACCACAAGTTCGGGTTG-TGACAAATTTGGA-AAATTTAGATGCAGAGGAGAA 1053
Query 815 AGCAACAGATGCTA-ATGTT-CAACAGCCAGAGTTACAGCATAACTTGCGGTTTATTGTT 872
||||| ||| || | ||||| ||| ||| |||||||| || ||||| || || ||||||
Sbjct 1054 AGCAAAAGAAGC-AGATGTTCCAA-TGCCGGAGTTACAACACAACTTACGCTTGATTGTT 1111
Query 873 AAATC-ACTCGAGCATGGGATTCTGAAGACTGATAAGGATTTGAGGAACGAGAAAGGATT 931
||| | | ||||||| |||| ||||| ||||| ||| |||||||| |||| || ||
Sbjct 1112 -GATCTAGTTGAGCATGAAATTCAGAAGATTGATAGGGACTTGAGGAATGAGAGAGAATC 1170
Query 932 AGCCTTGA-GCTTGCAGCAAGAGAAGGAGA-AATT-TAAGATGGGGGTAA-AGAAACAGA 987
|||||| | |||| ||||| |||||||||| || ||| || | || || ||||||| |
Sbjct 1171 AGCCTT-ATGCTTACAGCAGGAGAAGGAGATGCTTATAA-AT-GAGG-AAGAGAAACA-A 1225
Query 988 AAACG-CTGTTTGACAACTTGGGATATGTTGCAGAGGAAA-TCGATCGAATTGAGGTGGA 1045
||| | | || |||||| ||| |||| | ||||| |||| | | |||||||||| ||||
Sbjct 1226 AAAAGACACTTAGACAACATGGAATATATCGCAGATGAAATTAG-TCGAATTGAGCTGGA 1284
Query 1046 GATTGCGTCTGGGAATTTAAC-CTTGGATTCACTTGCCAATCGTTTCAAGGA-CTTGCGT 1103
| | || |||||||||| || | |||| |||||||| |||||||| |||| ||| |
Sbjct 1285 AAATACGGCTGGGAATTTGACAC-TGGACTCACTTGCGAATCGTTTTGAGGACCTT-CAA 1342
Query 1104 TCAAGCTATCCTGATGACTATAAG-TGTTGTAACTTGT-CATGCATTGCTTCCTCACTGG 1161
|| ||||||||||||| |||||| | ||||||||||| || |||||||| ||||||||
Sbjct 1343 ACATGCTATCCTGATGATTATAAGCT-TTGTAACTTGTCCA-CCATTGCTTGCTCACTGG 1400
Query 1162 CCTTGCCTCTCTTTATCAGGATGTTTCAGGGTTGGGACCCTCTTAGTGATGCAGAGCATG 1221
|||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 1401 CCTTGCCTCTCTTTATTAGGATGTTTCAGGGTTGGGACCCTCTTAGGGATCCAGTGCATG 1460
Query 1222 GTATCGAGGCTATATCTTCCTGGA-AAATGCTGCTGGAAGTTGAGGACA-ATCAAAGTAT 1279
|| || ||||||||||||| |||| ||| ||| ||||||| ||||| | |||||| |||
Sbjct 1461 GTCTCAAGGCTATATCTTCTTGGAGAAA-GCTTTTGGAAGTCGAGGA-AGATCAAAATAT 1518
Query 1280 CTCG--A----C---GCCTTATAGCCAACTTGTCTCAGAGGTAATTTTACCTGCTGTGCG 1330
|| | | | ||||||||||||||| ||||| |||||| | ||||||||||| ||
Sbjct 1519 CTGGGTAGTTTCAACGCCTTATAGCCAACTAGTCTCGGAGGTAGTGTTACCTGCTGTTCG 1578
Query 1331 AGTATCAGGCATCAATACTTGGGAACCTAGAGATCCTGAGCCAATG-TTGAGATTGCTAG 1389
| || ||||||| ||||| |||||||||||||| |||||||| ||| || ||||| |||
Sbjct 1579 AATAGCAGGCATTAATACCTGGGAACCTAGAGACCCTGAGCCGATGCTT-AGATTTTTAG 1637
Query 1390 AGACATGGGAGAAAAT-GCTACCCTCA-CTTATTTTCGAA-ACGATTTTG-ACCACAGTA 1445
|||||||||| ||| | ||| || ||| || | || | | ||||||||| || ||||||
Sbjct 1638 AGACATGGGA-AAATTTGCTGCCTTCATCTG-TCTT-GCATACGATTTTGGAC-ACAGTA 1693
Query 1446 GTGCTGCCAAAATTGTCAA-TCGCTATTGAATCTTGGGAACCACGTTTGGAAACT-GTTC 1503
||||||||||||||||||| | ||| |||||| |||||| ||||| |||| || |||
Sbjct 1694 GTGCTGCCAAAATTGTCAACT-GCTGTTGAATATTGGGATCCACGAAGGGAA-CTTGTTG 1751
Query 1504 CCATCCACT-TTTGGGTACATCCGTGGCTGCCAGTACTTGGTCAGAAGTTGGAAAGTGCG 1562
||||||| | ||||||| ||||| ||| ||||| |||||||| |||||||||| | |
Sbjct 1752 CCATCCA-TGTTTGGGTTCATCCTTGGTTGCCAATACTTGGTGAGAAGTTGGAGTTT-CT 1809
Query 1563 T-ATCAGATCATTC-GAATGAAATTCG-GTAACCTTCTTGATGCTTGGCATCCTAGTGAT 1619
| |||||||||||| || ||||||| | |||| ||||||||||||||||||| ||||||
Sbjct 1810 TTATCAGATCATTCAGA-TGAAATT-GAGTAATGTTCTTGATGCTTGGCATCCCAGTGAT 1867
Query 1620 GTG-TCTGTCC-ACACTATCCTTTCCCCTTGGAAGACTGTTTTTGATGCTGCAAGCTGGG 1677
| |||| | ||||||| |||||||| |||||||| ||||||||| || |||||||||
Sbjct 1868 -TCATCTG-CGTACACTATTCTTTCCCCATGGAAGACCGTTTTTGATACTTCAAGCTGGG 1925
Query 1678 AGCAGCTTATGCGTCGTTACATAGTTCCTAAA-TTACAGGTGGCCTTGCAAGAGTTCCAG 1736
| ||||||||||| |||||||||||||| ||| || ||| |||| ||||||||||| |||
Sbjct 1926 AACAGCTTATGCGCCGTTACATAGTTCCCAAACTT-CAGCTGGCTTTGCAAGAGTTTCAG 1984
Query 1737 ATAAACCCAGCAGATCAGAACTTAGA-CGAGTTCAATTTGGTTATGGGGTGGGTATCTTC 1795
|||||||| ||| | ||||| ||||| || |||| ||| ||||||| ||||| |||| |
Sbjct 1985 ATAAACCCGGCAAACCAGAATTTAGAACG-GTTCCATTGGGTTATGAAGTGGGCATCTGC 2043
Query 1796 AGTACCCATTCATCTAATGACTGATTTGATGGAGAGATTCTTTTTCCCCAAGTGGCTGGA 1855
||||||||| ||| ||||| |||||||||||| ||| ||||| |||||||| ||||||||
Sbjct 2044 AGTACCCATACATATAATGGCTGATTTGATGGGGAGGTTCTTCTTCCCCAAATGGCTGGA 2103
Query 1856 TGTTTTATATCACTGGTTGTGTTCAGAA-CCAAAGTTCGATGAGATA-ATGAAATGGTTT 1913
||| || || | |||||| |||| || || |||||| ||||| | | | |||| |
Sbjct 2104 TGTGTTGTACCTTTGGTTGCGTTCT-AATCCGGGGTTCGAAGAGATCCACGGA-TGGTAT 2161
Query 1914 TTGGGTTGGAAAG-GAACATTCCCACAGGAGCTTTCTGCAAAC-AGGAGGATC-GAAATC 1970
|| |||||||||| | |||||| || |||||||| ||||| || |||||| ||| ||
Sbjct 2162 TTAGGTTGGAAAGAGTT-ATTCCCGCAAGAGCTTTCAGCAAATGAG-AGGATCCGAATTC 2219
Query 1971 CAGTTCAAGCGTGGTCTAGATATGGCGAGGGAAGCAGTTGAACGGA-TGGAAATGTCTCA 2029
|||| ||||||||| |||||||| || |||||| |||||| ||| | ||| |||||||
Sbjct 2220 -AGTTAAAGCGTGGTTTAGATATGTTGATGGAAGCTGTTGAA-GGAGTTGAAGTGTCTCA 2277
Query 2030 GCCAGGGGCAAGGGAAAACATAAGT-TACCACAAGGCACAAGAGCAGAGGCAGTCTGAGG 2088
|||| ||||||||| ||| | || ||| ||| | | |||| | | | || |||
Sbjct 2278 GCCACGGGCAAGGGCAAA--TGAGCATAC-ACA-GTT-C--GAGCCG-G-C--TC--AGG 2324
Query 2089 GTCGTGCTAAGGTTCA-GGCTCAGGTGGATGACC-CGGAGGAGCTGAGTTTTAAAGAAGC 2146
|| ||| ||| || ||||||| ||||| | | | |||| ||||||||| |||||||
Sbjct 2325 CTCAAGCTCAGGC-CAAGGCTCAGATGGAT-AGCACTGAGGTGCTGAGTTTGAAAGAAGT 2382
Query 2147 AGTAG-AATTGTTTGCGCAGGAGAAGGAGTTGCTGTTGAAACCTAAACCTCATAGAATGC 2205
|| | || | |||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 2383 -GTTGGAAGTATTTGCGCAAGAGAAGGAGTTGCTGTTCAAACCTAAACCGAATAGAATGC 2441
Query 2206 ACAACGGTCTTCAGATCTATAGGTTCGGGAACGTGAGTGTG-TTACTAGACTCAGCAAAC 2264
|||| ||||||||||| ||| |||| ||||| |||||||| ||| ||||||||| |||
Sbjct 2442 ACAATGGTCTTCAGATATATGGGTTTGGGAATGTGAGTGTTATTA-TAGACTCAGTGAAC 2500
Query 2265 TCT-AAGTTGTTGGCCCAGGAAGAAGGACG-TTGGTTTCCTGT 2305
| ||| ||||||| ||| |||| ||| | ||||| || |||
Sbjct 2501 -CAGAAGCTGTTGGCTCAGAAAGATGGA-GATTGGTATCTTGT 2541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105129076200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5