BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G42340.1

Length=891
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935096 jgi|Araly1|935096|scaffold_403084.1                        303    1e-81


> Ahg935096 jgi|Araly1|935096|scaffold_403084.1
Length=453

 Score =  303 bits (164),  Expect = 1e-81
 Identities = 229/260 (88%), Gaps = 6/260 (2%)
 Strand=Plus/Plus

Query  422  CACAATCCCAACTACTTGATCCTGCTGATGTTGAAGCAATCGAATCGA-TGAAGAAGGAG  480
            |||||||| || |||||||||||||||||  |||| |||| ||| | | |||||||||||
Sbjct  79   CACAATCCGAAATACTTGATCCTGCTGATACTGAAACAATTGAAGC-ACTGAAGAAGGAG  137

Query  481  ATTTCAACTACTATGGACTTGTTGAAAATCGTACTACAGCTACACAAAGTTTTATTCCCT  540
             |||||||| || ||| ||||||||| ||||||| ||||||||||||||| |||||||||
Sbjct  138  TTTTCAACTGCTTTGGGCTTGTTGAAGATCGTACAACAGCTACACAAAGTATTATTCCCT  197

Query  541  ACAAGAGTTGGAGCTGGGCAAGTGAGACTTGCAGCTGGGAACAACATCAGTGGACAAGTG  600
            ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  198  ACAAGAGTTGGAGCTGGACAAGTGAGAGTTGCAGCTGGGAACAACATCAGTGGACAAGTG  257

Query  601  AGAGCTTCTGCTGGGAACATCATCA-GTGGGCAAGTGAGAGCTGCAGCTGGGAACAAT-A  658
            | |||| || ||||||||| ||| | |||| |||||||||||| | |||||||||| | |
Sbjct  258  AAAGCTACTCCTGGGAACAACAT-ATGTGGACAAGTGAGAGCTTCTGCTGGGAACA-TCA  315

Query  659  TCAGTGGACAAGTGAGAGCT  678
            | ||||| ||||||||||||
Sbjct  316  TTAGTGGGCAAGTGAGAGCT  335


 Score =  285 bits (154),  Expect = 4e-76
 Identities = 176/186 (95%), Gaps = 4/186 (2%)
 Strand=Plus/Plus

Query  575  CTGGGAACAACATCA-GTGGACAAGTGAGAGCTTCTGCTGGGAACATCATCAGTGGGCAA  633
            ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct  268  CTGGGAACAACAT-ATGTGGACAAGTGAGAGCTTCTGCTGGGAACATCATTAGTGGGCAA  326

Query  634  GTGAGAGCTGCAGCTGGGAACAAT-ATCAGTGGACAAGTGAGAGCTGGGAATATCATCAG  692
            ||||||||| | ||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct  327  GTGAGAGCTTCTGCTGGGAAC-ATCATCAGTGGGCAAGTGAGAGCTGGGAATATCATCAG  385

Query  693  TGAACAAGCAGGGCTAAGGAAGCATGTAGGAAACCGATGGGAATGAAGGAGCCAGTGACG  752
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  386  TGAACAAGCAGGACTAAGGAAGCATGTAGGAAACCGATGGGAATGAAGGAGCCAGTAACG  445

Query  753  CTTTGG  758
            ||||||
Sbjct  446  CTTTGG  451


 Score =  126 bits (68),  Expect = 2e-28
 Identities = 83/90 (92%), Gaps = 2/90 (2%)
 Strand=Plus/Plus

Query  555  TGGGCAAGTGAGA-CTTGCAGCTGGGAACAACATCAGTGGACAAGTGAGAGCTTCTGCTG  613
            ||| ||||||||| ||| | |||||||||| ||| ||||| |||||||||||||||||||
Sbjct  284  TGGACAAGTGAGAGCTT-CTGCTGGGAACATCATTAGTGGGCAAGTGAGAGCTTCTGCTG  342

Query  614  GGAACATCATCAGTGGGCAAGTGAGAGCTG  643
            ||||||||||||||||||||||||||||||
Sbjct  343  GGAACATCATCAGTGGGCAAGTGAGAGCTG  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33014446122


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5