BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42350.1
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483328 jgi|Araly1|483328|fgenesh2_kg.4__2388__AT2G42350.1 1094 0.0
> Ahg483328 jgi|Araly1|483328|fgenesh2_kg.4__2388__AT2G42350.1
Length=811
Score = 1094 bits (592), Expect = 0.0
Identities = 730/792 (92%), Gaps = 27/792 (3%)
Strand=Plus/Plus
Query 65 CTTGTTCTACCAAAAC-AAAACGCTTCATCATGAGCTCTAACAACAAAAC---TGATGAT 120
||||||||||| |||| |||||||||||||||||||||| |||||||||| |||||||
Sbjct 37 CTTGTTCTACCGAAACAAAAACGCTTCATCATGAGCTCTGACAACAAAACAAATGATGAT 96
Query 121 TCCGACGACCGTTC-TTTCTGGCAAAACTCGACTTCTTACGATGCCAGCAGCAAGATTTT 179
| | ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 97 T-C--CGACCGTTCGTTT-TGGCAAAACTCGACTTCTTACGATGCCAGCAGCAAGATCAT 152
Query 180 CCTCGTCACCACCGTTTCCTTCTCTA-TTATTATCATCATCGTGTTCGTTTATTATCTCT 238
||||||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||
Sbjct 153 GCTCGTCACCACCGTTTCCTTCTC-AGTTATTATCCTCATCGTCTTCGTTTATTATCTCT 211
Query 239 ACGCAAAATTCGTTCT---CCACCGTAGAT-CAGCCTTCCAAGACCTCTCCTTCTCTGTC 294
|||||||||||||||| || |||||||| || |||||||||||||||| ||||| |||
Sbjct 212 ACGCAAAATTCGTTCTCCGCCGCCGTAGATCCA-CCTTCCAAGACCTCTCGTTCTCCGTC 270
Query 295 GTTTCTCAGCCGCCAAAACGTGGCCTCGATTCTCTAGTCATCGCTTCTCTCCCAACGTTC 354
|||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 271 GTTTCTCATCCGCCCAAACGTGGCCTCGATACTCTAGTCATCGCTTCTCTCCCAACGTTC 330
Query 355 GTGGTTGGAATCAAGAATGACGTGGCGGGTACGGAATGTGCGGTTTGTCTAAGCTTATTG 414
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 331 GTGGTTGGAGTCAAGAATGACGTGGCGGGTACGGAATGTGCGGTTTGTCTAAGCTTGTTG 390
Query 415 GAGGAGAAAGATAATGCAAGGATGTTACCGAACTGCAAACACGTGTTCCACGTGTCTTGC 474
||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||| |||||
Sbjct 391 GAGGAGAAAGATAATGCGAGGATGTTACCAAACTGCAAGCACGTGTTCCATGTGACTTGC 450
Query 475 GTTGACACGTGGCTCACCACGCAGTCCACTTGTCCCGTTTGTCGAACTGAAGCCGAGCCA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GTTGACACGTGGCTCACCACGCAGTCCACTTGTCCCGTTTGTCGAACTGAAGCCGAGCCA 510
Query 535 AGTCATCCAAGGCTTGAGCCTGAGCCTAGGGAAGGGCCAGTTGGCGACTTTGCACCGCCG 594
|||| | |||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 511 AGTC--C-AAGGCTTGAGCCTGAGCCTAGGGAAGGGCCCGTTGGCGACGTTGCACCGCCG 567
Query 595 TTAGATTTCGCGGGGGTTGATAACAAAACCGGCGGATCATCGGTTTCGAGGTTAGACTCG 654
|||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 568 TTAGATTTCGTGGGGGTAGATAACAAAACCGGCGGGTCATCGGTTTTGAGGTTAGACTCG 627
Query 655 TTCCGGAGGATTTTGACAAGGGAAAGATCTTCGAACAGGCGGGATCATTCTCGCGTTGAC 714
|| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 628 TTTCGAAGGATTTTGACAAGGGAAAGATCTTCGAACAGGCTCGATCATTCTCGCGTTGAC 687
Query 715 CAAGATCGTGAATTGGATATTGAAAGACAGTGAATTCAGTATATAGTATATACACACATA 774
|||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||
Sbjct 688 CAAGATCGTGAATTGGATATAGAAAGACAGTGAAATCA-TATA--GTATATACACACATA 744
Query 775 CGCCGGTTaaaaaaaaaaaaGTATAAACACACATGCATCCATAATTAATCCTTAATTCAT 834
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 745 CGCCGGTTTAAAAAT-----GTATAAACACACATGCATCCATAATTAATCCTTAATTCAT 799
Query 835 GAACCATAATAC 846
|||| |||||||
Sbjct 800 GAACAATAATAC 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31337037774
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5