BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G42365.1

Length=1224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg902223 jgi|Araly1|902223|Al_scaffold_0004_2873                    135    6e-31


> Ahg902223 jgi|Araly1|902223|Al_scaffold_0004_2873
Length=258

 Score =  135 bits (73),  Expect = 6e-31
 Identities = 77/79 (97%), Gaps = 0/79 (0%)
 Strand=Plus/Plus

Query  828  AGATGAAGCTTGCAACTTTAGTAACAACGCAGCTGTTACTTCTCTCAATCCTAGTCAAGG  887
            |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  180  AGATGAAGCTTGCAACTTTAGTAACAACGCAGCTGTTACTTCACTGAATCCTAGTCAAGG  239

Query  888  AACATGCAAGTTTCCTTCA  906
            |||||||||||||||||||
Sbjct  240  AACATGCAAGTTTCCTTCA  258



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45709377483


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5