BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42370.1
Length=2148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902224 jgi|Araly1|902224|Al_scaffold_0004_2874 2811 0.0
> Ahg902224 jgi|Araly1|902224|Al_scaffold_0004_2874
Length=2160
Score = 2811 bits (1522), Expect = 0.0
Identities = 1967/2177 (90%), Gaps = 50/2177 (2%)
Strand=Plus/Plus
Query 1 ATGGATCCTCCGGCGAATCCTTTTGCATCTCGAGAGCAAGATACAGTAACTATTTTAAGA 60
|||||| |||| |||||||||||| | |||||||||||| |||| | ||||||| ||
Sbjct 1 ATGGATTCTCCTGCGAATCCTTTTAAACCTCGAGAGCAAGGTACAATCACTATTTCGCGA 60
Query 61 AACCTGATTAAGCAAGCT-ACTTTGGAGGAAGAAGTCTCTGAAGCTTCAGAGACACATTC 119
|||||||| ||| ||||| || |||| |||||||||| |||||||||||||||||||||
Sbjct 61 AACCTGATCAAGGAAGCTAAC-GTGGAAGAAGAAGTCTGTGAAGCTTCAGAGACACATTC 119
Query 120 TGTTCCGAACAAAATCAGAATTTTAGAGTCAGTGTCGGACGAAATGAGGAAAT--C---- 173
|| |||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 120 TGGTCCGGACAAAATCCGAATTTTAGAGTCAGTGTCGGACGAAATGAGGAAATCGCAGGA 179
Query 174 -GC--AGGA-G-A-ACGGTAGTGATCAGAAAC---A-GT-T-GAGTGAGGAAGACGAGAT 221
|| |||| | | | |||||||||||||||| | || | || |||||||||| ||||
Sbjct 180 GGCTGAGGAGGTAGATGGTAGTGATCAGAAACTAGAGGTGTCGATTGAGGAAGACCAGAT 239
Query 222 TGATATTCTGGATTCAAAAGCCATGAGCTTTTCTTTTAGTTGTCACGGTGGTGGGCCAAA 281
||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 240 TGATACTATGGATTCAAAAGCCATGAGCTTTTCTTTTAATTGTCACGGTGGTGGGCCAAA 299
Query 282 GCGGAAGAAATGTAACGATAAGAAACGTAAGCAGCAAGAAGAGAAGTCTAAGAAGAAGCT 341
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 300 GCGGAAGAAAAAAAACGATAAGAAACGTAAGCAACAAGAAGAGAAGTCGAAGAAGAAGCT 359
Query 342 CAAGGTACTTGTTGAAACATTAAAGCTTGTACCTTTCAAGCCATTAAAAACCCTAGATTT 401
|||||||||||| |||| |||||||| ||||||||||||||||| |||||| |||||||
Sbjct 360 TAAGGTACTTGTTCAAACCTTAAAGCTCGTACCTTTCAAGCCATTTAAAACCTTAGATTT 419
Query 402 TGCTTGTTATGAGAGTCTCTTAAAGACTCTCGGAT-TGTGGGATTTTGTGCATTTGGAAT 460
|||| ||||||||||| |||| |||||||| || | ||||||||||||||||||||||||
Sbjct 420 TGCTCGTTATGAGAGTGTCTTGAAGACTCTTGG-TCTGTGGGATTTTGTGCATTTGGAAT 478
Query 461 TTGATCAGGATATGGATTATGATCTTGTGGCTCAACTTATAGCTTCCTATAGTGCTGGA- 519
||||||||||||||||||||| |||||||||||||||||| |||| ||||||| | ||
Sbjct 479 TTGATCAGGATATGGATTATGGTCTTGTGGCTCAACTTATTGCTTACTATAGT-CCAGAG 537
Query 520 GGTAAGTGCAGCTATATAAACGGGTCTAGGATTAAACTTAGTCGTGCGGATTTGGCTCGA 579
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGTAGGTGCAGTTATATAAACGGGTCTAGGATTAAACTTAGTCGTGCGGATTTGGCTCGA 597
Query 580 TCTTTGAAGTTGCCTAATAAGAAAGAACGTGTTGTCATTCTTGATGAGGATAAGGAATTT 639
||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||
Sbjct 598 GCTTTGAAGTTGCCTAATAAGAGAGAACGTGTTGTCATTCTAGATGAGGATAAAGAACTT 657
Query 640 CTGGAATCAGATGAATCAATCAGTGTTGTTGAA-GATGTTATCTCTAATTGGATGCTACT 698
|||||||||||||||| ||| ||| ||||| || || ||| |||||||||||||||||||
Sbjct 658 CTGGAATCAGATGAATTAATTAGTTTTGTT-AACGAAGTTGTCTCTAATTGGATGCTACT 716
Query 699 GCATTGTGATGATGCGTGGATGATGCCAGATGAAGTGGTGGAATGGATGAAAGGTATAAA 758
||||||||||||||||||||||||||||||| |||||||||| |||| |||| |||||||
Sbjct 717 GCATTGTGATGATGCGTGGATGATGCCAGATAAAGTGGTGGAGTGGAAGAAAAGTATAAA 776
Query 759 GAAAAAGCAATTGGATAAGCTGGACTGGGCTGGACTGATGTGGTTTATGGTTGAGAAAGA 818
| ||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct 777 GGAAAAGCAATTGGATAAGCTTGACTGGGCTGGATTGATGTGGTTCATGGTTGAGAAAGA 836
Query 819 GTTGAAAGCGGAGCCTCCACTCGGGGATTGTTTCTATGCGTCGCATTTGCAGATGGTCAT 878
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 837 GTTGAAAGCGGAGCCTCCACTCGGGGATTGTTTCTATGCGTCGCATCTGCAGATGGTGAT 896
Query 879 TAGATCACAGAAAATAGATCTGTTTAAGGAG-AGGGATTTGAAGGTAAAGGATGATATTG 937
||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||
Sbjct 897 TAGATCACAGAAAATAGATCTATTTAGGGAGCA-GGATTTGAAGGTAAAGGATGATATTG 955
Query 938 CTGCTTTGAATCTAGGAATGGATGATGGAGCCACTGACTCAAAGAAAGAAAACTGTGTGG 997
|||||||||||||| |||||||||||||||| | |||||||||| ||||||| |||||||
Sbjct 956 CTGCTTTGAATCTAAGAATGGATGATGGAGCTAGTGACTCAAAGGAAGAAAAGTGTGTGG 1015
Query 998 AGGAAAGTACGACCAAACTGAATCTTGGGCAAGTGATTGTGTCCGAAATGGCTGCT-ACG 1056
||||| ||| || | |||||||||||||| |||||| |||||| |||||||||||| | |
Sbjct 1016 AGGAAGGTATGATCGAACTGAATCTTGGGAAAGTGACTGTGTCTGAAATGGCTGCTGAGG 1075
Query 1057 ATGGAGCTTTATCATGAGGAACAAGCAATTGATCTTGAGGAAAACAAGGAACAACCAATG 1116
| ||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 1076 A-GGAGCATCATCATGAGGAACAAGCAATGGATCTTGAGGAAAACAAGGAACAGCCAAAG 1134
Query 1117 GATCTTAAGGAAGCCAAGGAAGAAGGAGAT-G-AAATGGAATGGAGACAGCCATATGAAA 1174
|||||| ||||| ||||||||||||||||| | |||||| | | || ||||||||
Sbjct 1135 GATCTTCAGGAAACCAAGGAAGAAGGAGATGGAAAATGG-CTTTTG--AG--ATATGAAA 1189
Query 1175 AGAAC-GGAACAAGACATAGGAAAGTGGGAGAGAATGAGATACTTGAAGATGAAATTGAG 1233
|||| || ||| |||||| ||||||||||||| || || |||||||||||||||||||
Sbjct 1190 GGAACAGG-ACAGGACATAAGAAAGTGGGAGAGTAT--GA-ACTTGAAGATGAAATTGAG 1245
Query 1234 AAAGATGGAGAAAAGCAAGAA-GGAGGGTTTTTATTGTTTCGGAACGGTAAAACACTACA 1292
|||||||||||||||| | || ||||||||||| ||||||| |||||| ||||||||||
Sbjct 1246 AAAGATGGAGAAAAGC-ACAACGGAGGGTTTTTGTTGTTTCCAAACGGTGAAACACTACA 1304
Query 1293 CCAGGAAAATCTGATGTTGGGAGATACATCTACATTAGGTTATAATTCTGGGCTACAGGT 1352
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
Sbjct 1305 CCAGGAAAATCTGATGTTGGGAGATACATCTCCATTAGGTTATAATTCTGAGCTACAGAT 1364
Query 1353 TCATGGCAGTTCTACTTGTGATTTCCTG-GCACCTAGAGCTGTCATGCATATGGTTCCAG 1411
|||||||| ||||||| |||||||| || | | |||| ||||||||||||||||||||||
Sbjct 1365 TCATGGCAATTCTACTGGTGATTTCATGAG-ATCTAGGGCTGTCATGCATATGGTTCCAG 1423
Query 1412 GTCGTTCTCATTTTGGGAATGATAACAAGAGAGAGTTTGGTCACGAGAATGATATTTCAT 1471
|||||||||| ||| ||||||| |||||||||||| ||| |||||||||||||||||| |
Sbjct 1424 GTCGTTCTCACTTTAGGAATGACAACAAGAGAGAGATTGATCACGAGAATGATATTTCGT 1483
Query 1472 ACCATTTTGATAACCCTGCTAGTACTAAGAGGTTGAAGACACCATCTTGGGATGACAAGC 1531
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1484 ACCATTTTGATAACCCTGCTAGTACTAAGAGGTTGAAGACACCATATTGGGATGACAAGC 1543
Query 1532 CAGTTCCTTTTGACATTTGCATGGAGCAGATTAAGCACTTGGCAGATAAGGCTAAGTTAT 1591
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 CAGTTCCTTTTGACGTGTGCATGGAGCAGATTAAGCACTTGGCAGATAAGGCTAAGTTAT 1603
Query 1592 CATATGTCGAGAAAGACCAAGCTTGTGGAGAATCGAACATGAGGGAACAAATGTTGCAAA 1651
|||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||| |
Sbjct 1604 CATATGCCGAGAAAGACCGAGCTTGTGGAGAATCGAATATGAGGGAACAGATGTTGCTTA 1663
Query 1652 ATGAACTGCAAAGGAGGGAAGACATAATTCAGCAATTGCACAAAG-AAAGTTATGAAGAG 1710
|||||||||||||||||||||| |||||||||||||||||| ||| ||| ||| ||||||
Sbjct 1664 ATGAACTGCAAAGGAGGGAAGAAATAATTCAGCAATTGCAC-AAGAAAACTTACGAAGAG 1722
Query 1711 CTACACAAGAAGAACGTAGAGATCTATAAGCTTGAAAATGAACTTCGTATGATGACAAGT 1770
|||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1723 GAACACAAGAAGGATGTAGAGATCTATAAACTTGAGAATGAACTTCGTATGATGACAAGT 1782
Query 1771 GTATTAGCCTGGTACCAGAAAGCTTTAAAAGAATCACAGAAGGCATGTAGAAAGCACAGG 1830
||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1783 GTATTAGGCGGGTACCAGAAAGCTTTAAAAGAAACACAGAAGGCATGTAGAAAGCACAGG 1842
Query 1831 AAAGTTTGCCCTTTGCTTGATAAACCGATATACATAGATGTTAAAGGTACTGGAGGTTTA 1890
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1843 AAAGTTTGCCCTTTGCGTGATAAACCGATATACAGAGATGTTAAAGGTACTGGAGGTTTA 1902
Query 1891 GTATTGAGCACTGCTGAAATCGAGAAGCTAAGATTGAAAGAAGAAAAAGAAGAGGGGATG 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 GTATTGAGCACTGCTGAAATCGAGAAGCTAAGATTGAAAGAAGAAAAAGAAGAGGGGATG 1962
Query 1951 AGACGAGTTCTAATAGAGAGACAAGTAAAAGAAGTTGGAAGTCTCTGGATTAAAGAGTAT 2010
||||||| ||||||||||||||||||| ||||| ||||||| |||||||| ||||| |||
Sbjct 1963 AGACGAGCTCTAATAGAGAGACAAGTAGAAGAATTTGGAAGCCTCTGGATAAAAGAATAT 2022
Query 2011 GAAGTGAACCTTAAGAAAAAAGTAGAGTTGCTTGACGGGAAGCTGATTGGGTTTCAAAAT 2070
|||||||||||||| |||||||||||| ||||||||| ||||||| ||||| ||||||
Sbjct 2023 GAAGTGAACCTTAAAAAAAAAGTAGAGCTGCTTGACGAGAAGCTGCCCGGGTTCCAAAAT 2082
Query 2071 AAGATGAAGCTCTTGAAAGAAACAATTTCAAGACGCG-AATCTATATCTGCAAGATTTGA 2129
||| |||| ||||||||||| ||| |||||||||| | || ||||| ||| |||||||||
Sbjct 2083 AAGGTGAACCTCTTGAAAGAGACAGTTTCAAGACGTGTAA-CTATACCTGGAAGATTTGA 2141
Query 2130 TGCAACATCAAACACTT 2146
|||||||||| ||||||
Sbjct 2142 TGCAACATCAGACACTT 2158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80827499890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5