BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42380.2
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483330 jgi|Araly1|483330|fgenesh2_kg.4__2390__AT2G42380.2 1940 0.0
Ahg486262 jgi|Araly1|486262|fgenesh2_kg.5__2254__AT3G58120.1 556 1e-157
> Ahg483330 jgi|Araly1|483330|fgenesh2_kg.4__2390__AT2G42380.2
Length=1492
Score = 1940 bits (1050), Expect = 0.0
Identities = 1367/1510 (91%), Gaps = 62/1510 (4%)
Strand=Plus/Plus
Query 21 tttcttcctctccttccttttttcttttctctatcttcttcATATGGTTCATGACATTGA 80
|||| |||||||||| | |||||| ||||||||||||| | ||||||| | ||||||||
Sbjct 14 TTTC-TCCTCTCCTT-CATTTTTC-TTTCTCTATCTTC--C-TATGGTTTAGGACATTGA 67
Query 81 TCTAATTCCACTTCCCATTTGTCTCCACAtttcgtttctttcctttgttttt-tcatcta 139
||| ||||||||||| |||||||| || | |||||||||||||||||| |||||||
Sbjct 68 TCTCATTCCACTTCCAATTTGTCT-CA-A-----TTTCTTTCCTTTGTTTTTCTCATCTA 120
Query 140 ggtttttggttttcTGAATTGGATTTACGTTAGTTTATCTTGT-A--CTTATTAATTAAG 196
|||||||||||||||||||||| |||| |||||||| |||||| | ||||||||||||
Sbjct 121 GGTTTTTGGTTTTCTGAATTGGGTTTAAGTTAGTTTCTCTTGTAATTATTATTAATTAAG 180
Query 197 GttttttttttttCCTTCCTCAATCCTGTAAATTCAGATTTGCTTTCTTTGGTA-ATCTT 255
| |||||||| |||||| |||||||| ||||||||||||| ||||||||||| | ||
Sbjct 181 G---TTTTTTTTCCCTTCCCCAATCCTGAAAATTCAGATTTGTTTTCTTTGGTAGTTTTT 237
Query 256 TTGGATCAAGATCCATCTATTTTTTCTTCAATGGCACAACTCCCTCCTAAAATCCCCAAC 315
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 TTGGATCAAGATCGATCTATTTTTTCTTCAATGGCACAACTTCCTCCTAAAATCCCCAAC 297
Query 316 ATGACACAACATTGGCCTGATTTCTCTTCCCAAAAGCTCTCTCCTTTCTCTACCCCAACC 375
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 298 ATGACACAACATTGGCCTGATTTCTCTTCCCAAAAGCTCTCTCCTTTCACTACCCCAACC 357
Query 376 GCAACCGCTGTCGCCACCGCTACAACCACCGTACAAAACCCCTCATGGGTCGACGAATTC 435
|| |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 358 GCGACCGCTATCGCCGCCGCTACAACCGCCGTACAAAACCCCTCATGGGTCGACGAATTC 417
Query 436 CTCGACTTCTCAGCGTCTCGCCGTGGCAACCACCGTCGTTCCATCAGCGACTCTATCGCA 495
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 418 CTAGACTTCTCAGCGTCTCGCCGTGGCAACCACCGTCGTTCCATCAGCGACTCTATCACA 477
Query 496 TTCCTCGAAGCTCCAACAGTCAGCATCGAAGACCACCAATTCGACAGGTTCGATGACGAA 555
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 478 TTCCTCGAAGCTCCAACCGTCAGCATCGAAGACCACCACTTCGACAGGTTCGACGACGAA 537
Query 556 CAGTTCATGTCGATGTTCACCGACGACGACAACCTTCATAGCAATCCTTCCCATATCAAC 615
||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 538 CAGTTCATGTCAATGTTCACCGACGACGACGGCCTTCATAATAATCCTTCCCATATCAAC 597
Query 616 AACAAAAATAACAATGTGGGGCCCACGGGATCTTCCTCGAACACATCCACGCCGTCCAAT 675
||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 598 AACAACAACAACAATGTGGGGCCCACCGGCTCTTCCTCGAACACATCCACGCCGTCCAAT 657
Query 676 AGCTTCAACGACGATAACAAAGAATTACCACCGTCCGATCATAACATGAACAATAATATC 735
||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||| |
Sbjct 658 AGCATCAACGACGACAACAAAGAATTACCACCGGCAGATCATAACATGAACAATAATAAC 717
Query 736 AACAACAACTATAACGATGAAGTCCAAAGCCAATGCAAGATGGAGCCAGAAGATGGTACG 795
||||||||| |||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 718 AACAACAACAATAACGATGAAGTCCAGAGCCAATGCAAGATAGAGCCAGAGGATGGTACG 777
Query 796 GCGTCGAATAACAATTCCGGTGATAGCTCCGGCAACCGGATTCTCGATCCCAAAAGGGTT 855
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 GCGTCGAATAACAATTCCGGCGATAGCTCCGGCAACCGGATTCTCGATCCCAAAAGGGTT 837
Query 856 AAGAGAATATTAGCAAATCGGCAATCAGCACAGAGATCAAGGGTGAGGAAACTGCAATAC 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGAGAATATTAGCAAATCGGCAATCAGCACAGAGATCAAGGGTGAGGAAACTGCAATAC 897
Query 916 ATATCAGAGCTCGAACGTAGCGTCACTTCGTTGCAGGCGGAAGTGTCAGTGTTATCGCCA 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATATCAGAGCTCGAACGTAGCGTCACTTCGTTGCAGGCGGAAGTGTCAGTGTTATCGCCA 957
Query 976 AGAGTTGCATTCTTGGATCATCAACGTTTGCTTCTTAACGTTGACAACAGCGCTCTCAAG 1035
||||| || |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||
Sbjct 958 AGAGTCGCGTTCTTGGATCATCAGCGTTTGCTTCTCAACGTCGACAATAGCGCTCTCAAG 1017
Query 1036 CAACGAATCGCTGCTTTATCTCAAGACAAGCTTTTCAAAGACGCACATCAAGAAGCATTG 1095
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1018 CAACGAATCGCTGCTTTATCTCAAGACAAGATTTTCAAAGACGCACATCAAGAAGCATTG 1077
Query 1096 AAGAGAGAAATAGAGAGACTTCGACAAGTGTATAATCAACAAAGCCTCACGAATG-TGGA 1154
||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||
Sbjct 1078 AAGAGAGAAATAGAGAGACTTCGACAAGTGTATAATCAACAAAGCCTCAAG-ACGATGGA 1136
Query 1155 AAATGCAAATCATTTATCGGCGACCGGAGCCGGTGCTA-CTCCGGCCGTCGACATCAAGT 1213
||||||||||||||| |||||||||||||||| |||| || | |||||||||||||||
Sbjct 1137 GAATGCAAATCATTTACCGGCGACCGGAGCCGGAGCTACCT-CAGCCGTCGACATCAAGC 1195
Query 1214 CGTCCGTTGAAACAGAGCAGCTCCTCAATGTCTCATAAATTAACCATCATGCATCATCAT 1273
|||| ||| |||| || | | | | ||| | || ||| || ||||
Sbjct 1196 CGTCTATTG-AACA-AG-A-----AC-A-G-CTC-----CT---CA--ATG--TC-TCAT 1231
Query 1274 CAACATTTCTCTCTTTTAGCTTCTTGGCAAAAGTTCTTGACTATAAAATCTCTTTCGGGT 1333
|| | || || | | ||||||||||||| | |||||||||||||||||||| || |
Sbjct 1232 -AA-A-TT-AATC-ATCATCTTCTTGGCAAAAATGCTTGACTATAAAATCTCTTTAGGCT 1286
Query 1334 AAGAAATTCAGGAGATATACATTTTTTATTCTAATCACATTGTTTTTAAGTTGTGATGAA 1393
||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 AAGAATTTCAGAAGAT-GACATTTTTTATTCTAATCACATTGTTTTTAAGTTGTGATGAA 1345
Query 1394 TTCAGTTTGATGTATCTTATTTATTTTGTTT--ATGTCGTCttt-ttttCTTGGGG--TT 1448
|||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||| ||
Sbjct 1346 TTCAGTTTGATGTATCTTATTTTTTTTATTTTTATGTCGTCTTTCTTTTCTTGGGGAATT 1405
Query 1449 GATGGAAGGGAATCATCAATTGTTGTTTGTACAAAGAACTAGTTGAAttttttttt-ttt 1507
|||||||||| ||||||||||||||||||||||||||||||||||| ||| || || |||
Sbjct 1406 GATGGAAGGGGATCATCAATTGTTGTTTGTACAAAGAACTAGTTGA-TTTGTTATTGTTT 1464
Query 1508 ttttttGGGA 1517
||||||||||
Sbjct 1465 TTTTTTGGGA 1474
> Ahg486262 jgi|Araly1|486262|fgenesh2_kg.5__2254__AT3G58120.1
Length=1525
Score = 556 bits (301), Expect = 1e-157
Identities = 745/944 (79%), Gaps = 92/944 (10%)
Strand=Plus/Plus
Query 285 AATGGCACAACTCCCTCCTAAAATCCCCAA-CATGAC-A---CAACATTGGCCTGATTTC 339
|||||||||||||||||| ||||| ||||| |||||| | ||| |||||||||| |||
Sbjct 220 AATGGCACAACTCCCTCCGAAAAT-CCCAACCATGACAACGCCAA-ATTGGCCTGACTTC 277
Query 340 TCTTCCCA-AAAGCTCTCTCCTTTC-TCTACCCCAACCGCAACCGCTGTC-GCCACCG-C 395
|| ||||| ||| ||| |||| | || || |||| || | || | | || |||| |
Sbjct 278 TCCTCCCAGAAA---CTC-CCTTCCATC-GCCGCAACGGCCGCGGCCG-CAGCAACCGCC 331
Query 396 -TACAACCACCGTACAAAACCCCTCATGGGTCGACGAATTCCTCGACTTCTCAGCGTCTC 454
|| | || | ||||||||| |||||| | || || || ||||||||||| ||| |||
Sbjct 332 GGACCA-CAAC-AACAAAACCCTTCATGGATGGATGAGTTTCTCGACTTCTCGGCGACTC 389
Query 455 GCCGTGGCAAC-CACCGTCGTTCCATCAGCGACTCTATCGCATTCCTCGAAG-CTCCAAC 512
||||||| || ||||||||||| || |||||||| || || || || | || | || |
Sbjct 390 GCCGTGG-GACTCACCGTCGTTCAATAAGCGACTCCATTGCTTTTCTTG-AGCCACCTTC 447
Query 513 AGT-CAGC-ATCGAAGACCACCAATTCGACAGGTTCGATGACGAACAGTTCATGTCGATG 570
| | || | ||| ||||||| ||||| ||||| || || || || |||||||| |||
Sbjct 448 -CTCCGGCGTTGGAA-ACCACCACTTCGATAGGTTTGACGATGAGCAATTCATGTCCATG 505
Query 571 TTCACCGACGACG-ACAACCTTCATAGCAATCCTTC-CCAT-ATCAACAACA-AAAAT-A 625
|||| |||||||| || | | || | |||| | || ||| |||| || || || || |
Sbjct 506 TTCAACGACGACGTAC-A-CAACA-A-CAAT-CATCATCATCATCATCACCACAACATCA 560
Query 626 A---CAATGTGGGGCCCACGGGATCTTCCTCGAACACATCCACG----CCG-TC-CAATA 676
| ||||||||| |||||| | |||||||| ||||| |||||| ||| || |||||
Sbjct 561 ACGGCAATGTGGGTCCCACGCGTTCTTCCTCCAACACCTCCACGCCATCCGATCACAATA 620
Query 677 G-CTT--C-A--ACGACGATAACAAAGAATTACCACCGTCCGATC---AT-A--ACATGA 724
| ||| | | ||||| | ||||||||| |||||||||||||| || | |||||
Sbjct 621 GCCTTAGCGACGACGACAACAACAAAGAACAACCACCGTCCGATCATGATCATCACATGG 680
Query 725 ACAATAA--T-ATCAA-C--AACAA------C-----T-A-T--AACG-AT--GA--A-G 757
||||||| | | ||| | ||||| | | | | |||| || || | |
Sbjct 681 ACAATAACGTAACCAATCAAAACAACGCCGCCGGTAATAATTACAACGAATCGGACGAGG 740
Query 758 TCCAAAGCCAATGCAAGATGGAGCCAGAAGATGGTACGGC-GTCGAAT-AACAATTCCGG 815
|||||||||| ||||||| ||||||| | ||||| || | | ||||| || || |||||
Sbjct 741 TCCAAAGCCAGTGCAAGACGGAGCCACAGGATGGCCCGTCAG-CGAATCAA-AACTCCGG 798
Query 816 T-GATAGCTCCGGCAACCGGATTCTCGATCCCAAAAGGGTTAAGAGAATATTAGCAAATC 874
| || |||||||| |||||||||| ||||||||||||||| || ||||| |||||||||
Sbjct 799 TGGA-AGCTCCGGTAACCGGATTCACGATCCCAAAAGGGTAAAAAGAATTTTAGCAAATA 857
Query 875 GGCAATCAGCACAGAGATCAAGGGTGAGGAAACTGCAATACATATCAGAGCTCGAACGTA 934
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 858 GGCAATCAGCACAGAGATCAAGGGTGAGGAAACTGCAATACATATCAGAGCTTGAACGGA 917
Query 935 GCGTCACTTCGTTGCAGGCGGAAGTGTCAGTGTTATCGCCAAGAGTTGCATTCTTGGATC 994
|||| ||||| |||||| | ||||||||||||||||||||||||||||| || |||||||
Sbjct 918 GCGTTACTTCATTGCAGACTGAAGTGTCAGTGTTATCGCCAAGAGTTGCGTTTTTGGATC 977
Query 995 ATCAACGTTTGCTTCTTAACGTTGACAACAGCGCTCTCAAGCAACGAATCGCTGCTTTAT 1054
|||| || |||||||| ||||||||||| || ||| |||||||||||||||| |||||
Sbjct 978 ATCAGCGATTGCTTCTCAACGTTGACAATAGTGCTATCAAGCAACGAATCGCAGCTTTGG 1037
Query 1055 CTCAAGACAAGCTTTTCAAAGACGCACATCAAGAAGCATTGAAGAGAGAAATAGAGAGAC 1114
| ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1038 CCCAAGATAAGATTTTCAAAGACGCTCATCAAGAAGCATTGAAGAGAGAAATAGAGAGAC 1097
Query 1115 TTCGACAAGTGTATAATCAACAAAGCCTCACGAATGTGGAAAAT 1158
|||||||||| ||| ||||||||||||||| ||| |||| |||
Sbjct 1098 TTCGACAAGTATATCATCAACAAAGCCTCAAGAAAATGGAGAAT 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58278074850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5