BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G42388.1

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486603 jgi|Araly1|486603|fgenesh2_kg.5__2595__AT3G61260.1         313    1e-84
  Ahg333502 jgi|Araly1|333502|fgenesh1_pg.C_scaffold_1000067          89.8    2e-17


> Ahg486603 jgi|Araly1|486603|fgenesh2_kg.5__2595__AT3G61260.1
Length=838

 Score =  313 bits (169),  Expect = 1e-84
 Identities = 289/342 (85%), Gaps = 27/342 (8%)
 Strand=Plus/Plus

Query  284  AAGAAAGCAGCTGTCGAAGTGCAACTCAAGAAAATGGAGGAGGAACTAGAGAAGAAGAAA  343
            |||||||||||| | |||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct  441  AAGAAAGCAGCTCTTGAAGCGCAACTCAAGAAAATCGAGGAGCAACTAGAGAAGAAGAAA  500

Query  344  GCAGGAGTATGCAGAGAGGAT---GAATTAGGTTTCAGTGACTCACAAGGAAGCAGAAGA  400
            ||| |||||||||||||||||   |||| | ||| |||  | ||||||||||||||||||
Sbjct  501  GCA-GAGTATGCAGAGAGGATGAAGAATAAAGTTGCAGCCATTCACAAGGAAGCAGAAGA  559

Query  401  AAGAAGTGCAATGATTGAAGGTAAGCGTGGAGAAG-----C----A--AGAAGAAACGGC  449
             ||||| ||||||||||||| ||||||||||||||     |    |  ||||||||||||
Sbjct  560  GAGAAGAGCAATGATTGAAGCTAAGCGTGGAGAAGACATTCTTAAAGCAGAAGAAACGGC  619

Query  450  TGCTAAAATACTGGGCCATTAGAATTGTTCCAAAGGCAACTTGTGGATGTTTCCAATCTT  509
            |||| |||||| | |||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct  620  TGCT-AAATACAGAGCCACTGGAATTGTTCCAAAGGCAACTTGTGGATGTTTCTAATCTT  678

Query  510  GAGTTTACAAATCATTTTTTCAGGA-TTT-T---T-TAAC-TGTAAA----TTTCTCTCT  558
            || ||| |||||||  |||||| || ||| |   | |||  ||||||    |||||||||
Sbjct  679  GAATTTGCAAATCAAATTTTCAAGACTTTGTAACTGTAAAGTGTAAACAAATTTCTCTCT  738

Query  559  TCTCTTCAATGGCTTGTAATGTTTTTTGTATATTGATTTTGT  600
            ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  739  TCTCTTCAATGGCTTGTAATGTTGTTTGTATATTGATTTTGT  780


> Ahg333502 jgi|Araly1|333502|fgenesh1_pg.C_scaffold_1000067
Length=351

 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand=Plus/Plus

Query  109  ACAACATACGTTGACATCAGGCTACCATTGCTAGTTCTTGTTTCGAGAGAGAAGCGGCCT  168
            |||||| ||||||||||||||||||||||||||||||  ||||| |||||||||||||||
Sbjct  199  ACAACAGACGTTGACATCAGGCTACCATTGCTAGTTCAAGTTTCCAGAGAGAAGCGGCCT  258

Query  169  ATTTACGATT  178
              |||| |||
Sbjct  259  GGTTAC-ATT  267



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23102487702


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5