BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42390.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935107 jgi|Araly1|935107|scaffold_403095.1 1046 0.0
Ahg887296 jgi|Araly1|887296|Al_scaffold_0409_1 933 0.0
> Ahg935107 jgi|Araly1|935107|scaffold_403095.1
Length=707
Score = 1046 bits (566), Expect = 0.0
Identities = 660/705 (94%), Gaps = 7/705 (1%)
Strand=Plus/Plus
Query 29 ATCCACTCGAATCTTAAAACGACGTCGGTTTAACCAAATGCGAGTCAACGGATGCTGCTG 88
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATCTACTCGAATCTTAAAACGACGTCGGTTTTACCAAATGCGAGTCAACGGATGCTGCTG 60
Query 89 CAATGCGTCGTGTTGTGTTCGTCACTCGCCGTCGTCGTCATCTCCGTCGCTTCGACCTCT 148
|||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||
Sbjct 61 CAATGCGTCGTGTTGTGTTCGTTACTCGCCATCGTCGTCGTCTCCGTCGCTTCGATCTCT 120
Query 149 CCCCTCGTTGGTGTTCACCCTTTAGATGAAAAGTATTTCGACTCAGATGTTATCAAATGC 208
|||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 121 CCCCTC---GGTGTTCACCCTTTAGATGAAAAATATTTCGACTCAGATATTATCAAATGC 177
Query 209 AAAGATGGCTCCAAATCTTTCAC-AAGAGATCGTCTCAACGACAACTTCTGCGATTGTCT 267
||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 178 AAAGATGGCTCCAAATCTTTCTCTAA-AGATCGTCTCAACGACAACTTCTGCGATTGTCT 236
Query 268 CGACGGCACCGATGAGCCTGGAACTTCGGCATGTCCAAATGGCAAATTTTACTGTAGGAA 327
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 237 CGATGGCACCGATGAGCCTGGAACTTCAGCATGTCCAAATGGCAAATTTTACTGTAGAAA 296
Query 328 CATTGGAAGTTCTCCAAAGTTCGTTTACTCTTCTCGTGTGAATGATCGAATCTGTGATTG 387
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 297 CATTGGAAGTTCTCCAAAGTTTGTTTACTCTTCTCGTGTGAACGATCGTATCTGTGATTG 356
Query 388 CTGCGATGGAAGCGACGAGTACGAAAGTAGCATTCATTGTCCCAACACTTGTATAATGGG 447
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 357 CTGCGATGGAAGCGACGAGTACGAAAGTAGCATTCATTGTCCCAACACATGTGTAATGGG 416
Query 448 TGGTAACGTTAACTACATCTACAAACCTAGAGCCAACCTTAAATCTATACACTTGCAACT 507
||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 417 TGGTAACGTTAACTATATCTATAAACCTAGAACCAACCTTAAATCTATCCACTTGCAACT 476
Query 508 CGGTTCAACGCCTCATCCAAAGGAGTTTTATACTATAGGAAATCTTCAGGACATGGTCAA 567
||||||||| | ||||||||| |||| |||||| || || ||||||||||||||||||||
Sbjct 477 CGGTTCAACACTTCATCCAAAAGAGTCTTATACCATGGGGAATCTTCAGGACATGGTCAA 536
Query 568 GAATCTACAAGGTATGAAGCTTGTTTTCGCTCTTCAGATGGTTTTTATCGGTTTCTTAGT 627
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 537 GAATCTCCAAGGTATGAAGCTTGTCTTCGCCCTTCAGATGGTTTTTATCGGTTTCTTAGT 596
Query 628 GATCTTATGGATGCTTAGGAGTCGTGCTCGGTCTAAGAG-ACGACGCTATCTGCTGAAGA 686
||||||||||||||||| | | ||||||||||||||||| | |||| |||||||||||||
Sbjct 597 GATCTTATGGATGCTTACGCGCCGTGCTCGGTCTAAGAGGA-GACGTTATCTGCTGAAGA 655
Query 687 ATGTACCTCCCATTAATAGATCAGCTAACTAACTCCCTGGAACTT 731
||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct 656 ATGTATCTCCCAGTAATAGATCAGCTAACTAACTCTCTGGAACTT 700
> Ahg887296 jgi|Araly1|887296|Al_scaffold_0409_1
Length=636
Score = 933 bits (505), Expect = 0.0
Identities = 597/641 (93%), Gaps = 7/641 (1%)
Strand=Plus/Plus
Query 80 ATGCTGCTGCAATGCGTCGTGTTGTGTTCGTCACTCGCCGTCGTCGTCATCTCCGTCGCT 139
||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 1 ATGCTGCTGCAATGCGTCGTGTTGTGTTCGTTACTCGCCATCGTCGTCGTCTCCGTCGCT 60
Query 140 TCGACCTCTCCCCTCGTTGGTGTTCACCCTTTAGATGAAAAGTATTTCGACTCAGATGTT 199
|||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 61 TCGATCTCTCCCCTC---GGTGTTCACCCTTTAGATGAAAAATATTTCGACTCAGATATT 117
Query 200 ATCAAATGCAAAGATGGCTCCAAATCTTTCAC-AAGAGATCGTCTCAACGACAACTTCTG 258
|||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 118 ATCAAATGCAAAGATGGCTCCAAATCTTTCTCTAA-AGATCGTCTCAACGACAACTTCTG 176
Query 259 CGATTGTCTCGACGGCACCGATGAGCCTGGAACTTCGGCATGTCCAAATGGCAAATTTTA 318
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 177 CGATTGTCTCGATGGCACCGATGAGCCTGGAACTTCAGCATGTCCAAATGGCAAATTTTA 236
Query 319 CTGTAGGAACATTGGAAGTTCTCCAAAGTTCGTTTACTCTTCTCGTGTGAATGATCGAAT 378
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 237 CTGTAGAAACATTGGAAGTTCTCCAAAGTTTGTTTACTCTTCTCGTGTGAACGATCGTAT 296
Query 379 CTGTGATTGCTGCGATGGAAGCGACGAGTACGAAAGTAGCATTCATTGTCCCAACACTTG 438
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 297 CTGTGATTGTTGCGATGGAAGCGACGAGTACGAAAGTAGCATTCATTGTCCCAACACATG 356
Query 439 TATAATGGGTGGTAACGTTAACTACATCTACAAACCTAGAGCCAACCTTAAATCTATACA 498
| |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||
Sbjct 357 TGTAATGGGTGGTAACGTTAACTATATCTATAAACCTAGAACCAACCTTAAATCTATCCA 416
Query 499 CTTGCAACTCGGTTCAACGCCTCATCCAAAGGAGTTTTATACTATAGGAAATCTTCAGGA 558
||| |||||||||||||| | ||||||||| |||| |||||| || || |||||||||||
Sbjct 417 CTTCCAACTCGGTTCAACACTTCATCCAAAAGAGTCTTATACCATGGGGAATCTTCAGGA 476
Query 559 CATGGTCAAGAATCTACAAGGTATGAAGCTTGTTTTCGCTCTTCAGATGGTTTTTATCGG 618
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 477 CATGGTCAAGAATCTCCAAGGTATGAAGCTTGTCTTCGCCCTTCAGATGGTTTTTATCGG 536
Query 619 TTTCTTAGTGATCTTATGGATGCTTAGGAGTCGTGCTCGGTCTAAGAG-ACGACGCTATC 677
|||||||||||||||||||||||||| | | ||||||||||||||||| | |||| ||||
Sbjct 537 TTTCTTAGTGATCTTATGGATGCTTACGCGCCGTGCTCGGTCTAAGAGGA-GACGTTATC 595
Query 678 TGCTGAAGAATGTACCTCCCATTAATAGATCAGCTAACTAA 718
|||||||||||||| |||||| |||||||||||||||||||
Sbjct 596 TGCTGAAGAATGTATCTCCCAGTAATAGATCAGCTAACTAA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5